Wall clock time and date at job start Tue Mar 31 2020 09:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99921 * 2 1 4 4 N 1.34775 * 120.00233 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.63178 * 174.54858 * 4 2 1 6 6 C 1.53196 * 108.77571 * 126.40824 * 5 4 2 7 7 C 1.53044 * 109.31102 * 54.63894 * 6 5 4 8 8 C 1.53048 * 109.53686 * 298.63272 * 7 6 5 9 9 H 1.09005 * 109.49713 * 301.38391 * 8 7 6 10 10 C 1.52994 * 109.49696 * 181.31572 * 8 7 6 11 11 N 1.46904 * 109.47039 * 174.99869 * 10 8 7 12 12 C 1.46954 * 111.00054 * 293.79995 * 11 10 8 13 13 C 1.53052 * 109.36565 * 176.80889 * 12 11 10 14 14 N 1.46952 * 109.36151 * 58.40023 * 13 12 11 15 15 C 1.46904 * 110.99943 * 176.81071 * 14 13 12 16 16 C 1.50696 * 109.47185 * 293.80069 * 15 14 13 17 17 H 1.08006 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99883 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99797 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46592 * 120.00618 * 20 18 16 23 23 H 1.48495 * 109.47310 * 240.00188 * 20 18 16 24 24 C 1.46953 * 110.88728 * 300.68208 * 14 13 12 25 25 C 1.46956 * 110.99693 * 170.00103 * 11 10 8 26 26 C 1.46925 * 120.62818 * 354.56685 * 4 2 1 27 27 H 1.08994 * 109.47092 * 274.66084 * 1 2 3 28 28 H 1.08993 * 109.47072 * 34.66420 * 1 2 3 29 29 H 1.09007 * 109.46693 * 154.66425 * 1 2 3 30 30 H 1.09004 * 109.58676 * 6.62810 * 5 4 2 31 31 H 1.08998 * 109.70705 * 246.26475 * 5 4 2 32 32 H 1.08994 * 109.50174 * 294.68951 * 6 5 4 33 33 H 1.08996 * 109.52314 * 174.60106 * 6 5 4 34 34 H 1.08996 * 109.46318 * 178.61661 * 7 6 5 35 35 H 1.09002 * 109.46107 * 58.65078 * 7 6 5 36 36 H 1.09000 * 109.47689 * 294.99957 * 10 8 7 37 37 H 1.09000 * 109.47003 * 55.00647 * 10 8 7 38 38 H 1.08995 * 109.49154 * 296.77964 * 12 11 10 39 39 H 1.09009 * 109.48904 * 56.84382 * 12 11 10 40 40 H 1.09001 * 109.48765 * 298.43643 * 13 12 11 41 41 H 1.08997 * 109.50988 * 178.37992 * 13 12 11 42 42 H 1.08994 * 109.46933 * 53.80621 * 15 14 13 43 43 H 1.08999 * 109.47123 * 173.80291 * 15 14 13 44 44 H 0.97006 * 119.99567 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.48610 * 299.35729 * 24 14 13 46 46 H 1.09001 * 109.51357 * 179.29975 * 24 14 13 47 47 H 1.08999 * 109.49002 * 303.15390 * 25 11 10 48 48 H 1.09001 * 109.49173 * 63.22524 * 25 11 10 49 49 H 1.09007 * 109.58735 * 113.80259 * 26 4 2 50 50 H 1.08997 * 109.58975 * 353.38105 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6451 -1.1861 -0.1206 6 6 4.2248 -1.9974 1.0424 7 6 3.5780 -3.3842 1.0640 8 6 2.0694 -3.2421 1.2789 9 1 1.8832 -2.7184 2.2166 10 6 1.4283 -4.6301 1.3332 11 7 0.0017 -4.4983 1.6582 12 6 -0.1822 -3.9783 3.0204 13 6 -1.6756 -3.7808 3.2909 14 7 -2.3752 -5.0618 3.1204 15 6 -3.8017 -4.9299 3.4455 16 6 -3.9568 -4.6333 4.9148 17 1 -3.0829 -4.5505 5.5442 18 6 -5.2141 -4.4665 5.4555 19 7 -6.2781 -4.5667 4.6890 20 14 -5.4063 -4.0980 7.2767 21 1 -4.0661 -4.0360 7.9133 22 1 -6.0960 -2.7941 7.4477 23 1 -6.2095 -5.1705 7.9167 24 6 -2.1913 -5.5819 1.7583 25 6 -0.6978 -5.7794 1.4878 26 6 1.4653 -2.4448 0.1186 27 1 -0.3633 0.0835 1.0242 28 1 -0.3633 0.8452 -0.5845 29 1 -0.3633 -0.9289 -0.4398 30 1 4.0282 -0.1663 -0.0814 31 1 3.9304 -1.6476 -1.0660 32 1 4.0183 -1.4850 1.9820 33 1 5.3022 -2.1005 0.9133 34 1 4.0065 -3.9722 1.8757 35 1 3.7638 -3.8865 0.1146 36 1 1.5366 -5.1186 0.3648 37 1 1.9216 -5.2285 2.0992 38 1 0.2268 -4.6884 3.7390 39 1 0.3345 -3.0233 3.1179 40 1 -2.0787 -3.0501 2.5896 41 1 -1.8165 -3.4223 4.3106 42 1 -4.2333 -4.1161 2.8629 43 1 -4.3164 -5.8605 3.2064 44 1 -7.1627 -4.4497 5.0695 45 1 -2.6003 -4.8717 1.0396 46 1 -2.7080 -6.5367 1.6604 47 1 -0.5573 -6.1376 0.4680 48 1 -0.2947 -6.5100 2.1891 49 1 1.5706 -3.0104 -0.8073 50 1 0.4101 -2.2556 0.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208967684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:21 Heat of formation + Delta-G solvation = -31.430872 kcal Electronic energy + Delta-G solvation = -26894.370470 eV Core-core repulsion = 23341.983740 eV Total energy + Delta-G solvation = -3552.386730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41527 -38.96806 -37.56880 -35.25434 -33.35832 -32.69349 -31.73869 -30.46173 -29.57889 -28.14325 -25.93926 -25.42051 -24.04389 -23.24703 -22.01760 -21.33614 -20.46357 -19.27506 -19.06256 -17.22545 -16.34529 -16.15247 -15.96853 -15.59025 -15.05336 -14.74763 -14.55951 -14.35236 -14.21404 -14.03312 -13.78209 -13.58917 -13.41680 -13.28437 -12.95621 -12.58243 -12.37941 -12.18806 -12.09515 -11.90275 -11.68981 -11.39645 -11.25625 -11.10243 -10.94609 -10.91626 -10.76245 -10.73292 -10.59996 -10.33484 -10.25507 -9.88555 -9.72347 -9.18788 -8.82071 -8.46365 -8.20571 -7.25606 -6.04958 -4.06360 2.50075 2.85982 3.29270 3.36943 3.41288 3.92249 4.37281 4.40523 4.54127 4.59875 4.71378 4.76172 4.90742 4.99653 5.13150 5.15429 5.23216 5.28794 5.30899 5.33428 5.38341 5.43073 5.50286 5.52902 5.58536 5.61043 5.69950 5.72442 5.78501 5.80148 5.80907 5.87489 5.93871 6.01055 6.10382 6.20546 6.34745 6.40153 6.55627 6.64894 7.13690 7.17370 7.24698 7.31883 7.34565 7.77991 8.03660 8.06904 8.18169 8.52827 9.01504 9.58176 11.05906 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003147 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.002336 B = 8896.274940 C = 9556.816512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.516 3.484 3 O -0.556 6.556 4 N -0.615 5.615 5 C 0.109 3.891 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.099 4.099 9 H 0.079 0.921 10 C 0.061 3.939 11 N -0.539 5.539 12 C 0.056 3.944 13 C 0.068 3.932 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.507 4.507 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.057 3.943 25 C 0.062 3.938 26 C 0.118 3.882 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.085 0.915 42 H -0.009 1.009 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.753 1.658 -11.119 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.306 3.694 3 O -0.434 6.434 4 N -0.349 5.349 5 C -0.014 4.014 6 C -0.171 4.171 7 C -0.153 4.153 8 C -0.119 4.119 9 H 0.097 0.903 10 C -0.067 4.067 11 N -0.264 5.264 12 C -0.072 4.072 13 C -0.060 4.060 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.546 4.546 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.072 4.072 25 C -0.066 4.066 26 C -0.005 4.005 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.009 0.991 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.851 2.225 -11.118 21.998 hybrid contribution -0.309 -0.023 1.020 1.066 sum 18.542 2.203 -10.097 21.228 Atomic orbital electron populations 1.21982 0.91462 1.04891 1.05347 1.20884 0.90793 0.82877 0.74874 1.90683 1.70851 1.31241 1.50631 1.48238 1.07190 1.06661 1.72811 1.21558 0.79939 1.01943 0.97921 1.21888 0.99948 0.96065 0.99190 1.21559 0.94689 0.96809 1.02226 1.21554 0.94480 0.96230 0.99594 0.90300 1.22076 0.88462 0.95401 1.00793 1.62187 1.09917 1.27662 1.26636 1.22297 0.97936 0.99098 0.87906 1.21976 0.91062 0.91375 1.01631 1.62270 1.16167 1.26169 1.21805 1.19696 0.80868 0.96196 0.96356 1.21188 0.92263 1.47529 0.93591 0.91915 1.24989 0.95873 0.95602 0.98134 1.69968 0.98000 1.50438 1.35356 0.86465 0.78149 0.77813 0.85135 1.19687 1.21090 1.21021 1.22059 0.94002 0.99903 0.91267 1.22145 0.94873 0.89634 0.99953 1.21821 0.97612 0.83085 0.97941 0.88492 0.89023 0.89599 0.89235 0.91701 0.91499 0.90789 0.91581 0.91674 0.90842 0.94508 0.94371 0.91176 0.95392 0.89688 0.99073 0.95278 0.92972 0.95166 0.91104 0.91225 0.94340 0.91559 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.47 36.01 0.34 -1.37 16 2 C 0.52 6.33 7.80 -10.98 -0.09 6.24 16 3 O -0.56 -8.88 16.52 5.56 0.09 -8.79 16 4 N -0.62 -6.29 2.97 -172.76 -0.51 -6.80 16 5 C 0.11 0.98 6.44 -3.71 -0.02 0.96 16 6 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 7 C -0.11 -0.84 5.17 -26.68 -0.14 -0.98 16 8 C -0.10 -0.87 2.26 -90.50 -0.20 -1.07 16 9 H 0.08 0.81 6.28 -51.93 -0.33 0.49 16 10 C 0.06 0.59 4.35 -3.82 -0.02 0.57 16 11 N -0.54 -6.72 4.28 -234.46 -1.00 -7.72 16 12 C 0.06 0.80 5.42 -3.77 -0.02 0.78 16 13 C 0.07 1.26 5.43 -3.77 -0.02 1.24 16 14 N -0.54 -11.20 4.70 -235.91 -1.11 -12.30 16 15 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 16 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 17 H 0.06 1.72 7.13 -52.48 -0.37 1.34 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 20 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.06 0.97 5.61 -3.76 -0.02 0.95 16 25 C 0.06 0.84 5.61 -3.76 -0.02 0.81 16 26 C 0.12 1.05 5.25 -3.71 -0.02 1.03 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.72 6.20 -51.92 -0.32 0.40 16 30 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.90 6.25 -51.92 -0.32 0.57 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.72 6.79 -51.93 -0.35 1.37 16 42 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 43 H 0.03 0.80 8.03 -51.93 -0.42 0.38 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 47 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.99 5.41 -51.93 -0.28 0.71 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -31.52 379.65 -10.97 -42.49 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -9.07 Total: -3.40 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.80 Total: 0.10 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -1.89 Total: -52.48 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.52 -10.97 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208967684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.063 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds