Wall clock time and date at job start Tue Mar 31 2020 09:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99921 * 2 1 4 4 N 1.34775 * 120.00233 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.63178 * 174.54858 * 4 2 1 6 6 C 1.53196 * 108.77571 * 126.40824 * 5 4 2 7 7 C 1.53044 * 109.31102 * 54.63894 * 6 5 4 8 8 C 1.53048 * 109.53686 * 298.63272 * 7 6 5 9 9 H 1.09005 * 109.49713 * 301.38391 * 8 7 6 10 10 C 1.52994 * 109.49696 * 181.31572 * 8 7 6 11 11 N 1.46904 * 109.47039 * 174.99869 * 10 8 7 12 12 C 1.46954 * 111.00054 * 293.79995 * 11 10 8 13 13 C 1.53052 * 109.36565 * 176.80889 * 12 11 10 14 14 N 1.46952 * 109.36151 * 58.40023 * 13 12 11 15 15 C 1.46904 * 110.99943 * 176.81071 * 14 13 12 16 16 C 1.50696 * 109.47185 * 293.80069 * 15 14 13 17 17 H 1.08006 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99883 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99797 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46592 * 120.00618 * 20 18 16 23 23 H 1.48495 * 109.47310 * 240.00188 * 20 18 16 24 24 C 1.46953 * 110.88728 * 300.68208 * 14 13 12 25 25 C 1.46956 * 110.99693 * 170.00103 * 11 10 8 26 26 C 1.46925 * 120.62818 * 354.56685 * 4 2 1 27 27 H 1.08994 * 109.47092 * 274.66084 * 1 2 3 28 28 H 1.08993 * 109.47072 * 34.66420 * 1 2 3 29 29 H 1.09007 * 109.46693 * 154.66425 * 1 2 3 30 30 H 1.09004 * 109.58676 * 6.62810 * 5 4 2 31 31 H 1.08998 * 109.70705 * 246.26475 * 5 4 2 32 32 H 1.08994 * 109.50174 * 294.68951 * 6 5 4 33 33 H 1.08996 * 109.52314 * 174.60106 * 6 5 4 34 34 H 1.08996 * 109.46318 * 178.61661 * 7 6 5 35 35 H 1.09002 * 109.46107 * 58.65078 * 7 6 5 36 36 H 1.09000 * 109.47689 * 294.99957 * 10 8 7 37 37 H 1.09000 * 109.47003 * 55.00647 * 10 8 7 38 38 H 1.08995 * 109.49154 * 296.77964 * 12 11 10 39 39 H 1.09009 * 109.48904 * 56.84382 * 12 11 10 40 40 H 1.09001 * 109.48765 * 298.43643 * 13 12 11 41 41 H 1.08997 * 109.50988 * 178.37992 * 13 12 11 42 42 H 1.08994 * 109.46933 * 53.80621 * 15 14 13 43 43 H 1.08999 * 109.47123 * 173.80291 * 15 14 13 44 44 H 0.97006 * 119.99567 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.48610 * 299.35729 * 24 14 13 46 46 H 1.09001 * 109.51357 * 179.29975 * 24 14 13 47 47 H 1.08999 * 109.49002 * 303.15390 * 25 11 10 48 48 H 1.09001 * 109.49173 * 63.22524 * 25 11 10 49 49 H 1.09007 * 109.58735 * 113.80259 * 26 4 2 50 50 H 1.08997 * 109.58975 * 353.38105 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6451 -1.1861 -0.1206 6 6 4.2248 -1.9974 1.0424 7 6 3.5780 -3.3842 1.0640 8 6 2.0694 -3.2421 1.2789 9 1 1.8832 -2.7184 2.2166 10 6 1.4283 -4.6301 1.3332 11 7 0.0017 -4.4983 1.6582 12 6 -0.1822 -3.9783 3.0204 13 6 -1.6756 -3.7808 3.2909 14 7 -2.3752 -5.0618 3.1204 15 6 -3.8017 -4.9299 3.4455 16 6 -3.9568 -4.6333 4.9148 17 1 -3.0829 -4.5505 5.5442 18 6 -5.2141 -4.4665 5.4555 19 7 -6.2781 -4.5667 4.6890 20 14 -5.4063 -4.0980 7.2767 21 1 -4.0661 -4.0360 7.9133 22 1 -6.0960 -2.7941 7.4477 23 1 -6.2095 -5.1705 7.9167 24 6 -2.1913 -5.5819 1.7583 25 6 -0.6978 -5.7794 1.4878 26 6 1.4653 -2.4448 0.1186 27 1 -0.3633 0.0835 1.0242 28 1 -0.3633 0.8452 -0.5845 29 1 -0.3633 -0.9289 -0.4398 30 1 4.0282 -0.1663 -0.0814 31 1 3.9304 -1.6476 -1.0660 32 1 4.0183 -1.4850 1.9820 33 1 5.3022 -2.1005 0.9133 34 1 4.0065 -3.9722 1.8757 35 1 3.7638 -3.8865 0.1146 36 1 1.5366 -5.1186 0.3648 37 1 1.9216 -5.2285 2.0992 38 1 0.2268 -4.6884 3.7390 39 1 0.3345 -3.0233 3.1179 40 1 -2.0787 -3.0501 2.5896 41 1 -1.8165 -3.4223 4.3106 42 1 -4.2333 -4.1161 2.8629 43 1 -4.3164 -5.8605 3.2064 44 1 -7.1627 -4.4497 5.0695 45 1 -2.6003 -4.8717 1.0396 46 1 -2.7080 -6.5367 1.6604 47 1 -0.5573 -6.1376 0.4680 48 1 -0.2947 -6.5100 2.1891 49 1 1.5706 -3.0104 -0.8073 50 1 0.4101 -2.2556 0.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208967684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:21 Heat of formation + Delta-G solvation = -52.876608 kcal Electronic energy + Delta-G solvation = -26895.300427 eV Core-core repulsion = 23341.983740 eV Total energy + Delta-G solvation = -3553.316687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26733 -40.16194 -38.58125 -36.60255 -34.72241 -34.03922 -32.79877 -31.75671 -30.41913 -29.69871 -27.38329 -26.16069 -25.29285 -24.55696 -23.35893 -22.52427 -21.29573 -20.54537 -19.90945 -18.47562 -18.09663 -17.25167 -16.97726 -16.46497 -16.42547 -15.93960 -15.78481 -15.62089 -15.41601 -15.14958 -14.99495 -14.72564 -14.40521 -14.13380 -14.07077 -13.85943 -13.43326 -13.39398 -13.18938 -13.03824 -12.90195 -12.68660 -12.59504 -12.48829 -12.23377 -12.13080 -12.05032 -11.90093 -11.71113 -11.65236 -11.48781 -11.19163 -11.08871 -10.81008 -10.61933 -9.64007 -9.24951 -8.97271 -8.20627 -6.30532 1.40631 1.41266 1.54509 1.56758 2.07646 2.40036 2.94729 3.11948 3.34739 3.60173 3.85433 3.88231 4.00378 4.07191 4.08204 4.24739 4.26619 4.39805 4.43107 4.43641 4.47658 4.54892 4.56108 4.64160 4.72694 4.74524 4.77626 4.83789 4.90741 4.93868 4.96439 5.02270 5.04570 5.08543 5.09173 5.12404 5.17278 5.26414 5.29183 5.33469 5.48202 5.60238 5.64897 6.04038 6.11844 6.17629 6.39270 6.40258 6.67250 6.86219 7.13360 7.39435 8.90597 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003147 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.002336 B = 8896.274940 C = 9556.816512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.602 6.602 4 N -0.611 5.611 5 C 0.104 3.896 6 C -0.127 4.127 7 C -0.109 4.109 8 C -0.094 4.094 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.540 5.540 12 C 0.071 3.929 13 C 0.070 3.930 14 N -0.547 5.547 15 C 0.210 3.790 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.278 1.278 24 C 0.053 3.947 25 C 0.072 3.928 26 C 0.118 3.882 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.019 0.981 41 H 0.061 0.939 42 H -0.039 1.039 43 H 0.002 0.998 44 H 0.264 0.736 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.085 0.915 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.787 0.568 -11.461 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.485 6.485 4 N -0.343 5.343 5 C -0.018 4.018 6 C -0.165 4.165 7 C -0.147 4.147 8 C -0.113 4.113 9 H 0.080 0.920 10 C -0.061 4.061 11 N -0.265 5.265 12 C -0.057 4.057 13 C -0.059 4.059 14 N -0.272 5.272 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.075 4.075 25 C -0.056 4.056 26 C -0.004 4.004 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.037 0.963 41 H 0.079 0.921 42 H -0.022 1.022 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.053 0.947 49 H 0.103 0.897 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.917 1.097 -11.472 23.882 hybrid contribution -0.925 0.290 1.061 1.437 sum 19.992 1.387 -10.410 22.583 Atomic orbital electron populations 1.21974 0.89811 1.05869 1.05552 1.21322 0.91750 0.82793 0.74318 1.90657 1.71847 1.32890 1.53057 1.48340 1.07874 1.06625 1.71458 1.21688 0.79218 1.01309 0.99579 1.21847 1.01144 0.95914 0.97580 1.21526 0.93155 0.96518 1.03452 1.21490 0.95681 0.95534 0.98624 0.92013 1.22130 0.86061 0.95940 1.01989 1.62164 1.12152 1.27163 1.24979 1.22073 0.94451 1.00107 0.89083 1.21949 0.93806 0.90075 1.00030 1.62194 1.13054 1.27423 1.24512 1.19327 0.83661 0.93462 0.95233 1.21482 0.92435 1.47488 0.94584 0.92058 1.25895 0.95488 0.95234 1.02982 1.70090 0.98567 1.51291 1.37517 0.85363 0.78418 0.77756 0.79261 1.18754 1.20453 1.20408 1.22175 0.97228 0.99191 0.88918 1.22063 0.91773 0.89953 1.01765 1.21911 0.97070 0.82489 0.98910 0.88484 0.88708 0.88082 0.91342 0.89720 0.93252 0.88834 0.90864 0.89921 0.88517 0.94158 0.95018 0.89366 0.96262 0.92095 1.02168 0.97949 0.92701 0.95751 0.91483 0.87849 0.94677 0.89696 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.47 71.24 0.67 -2.56 16 2 C 0.51 12.30 7.80 87.66 0.68 12.98 16 3 O -0.60 -19.72 16.52 -3.03 -0.05 -19.77 16 4 N -0.61 -11.56 2.97 -818.90 -2.43 -13.99 16 5 C 0.10 1.70 6.44 86.36 0.56 2.26 16 6 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 7 C -0.11 -1.18 5.17 30.62 0.16 -1.02 16 8 C -0.09 -1.34 2.26 -10.71 -0.02 -1.37 16 9 H 0.06 1.13 6.28 -2.38 -0.01 1.11 16 10 C 0.07 1.01 4.35 86.30 0.38 1.38 16 11 N -0.54 -11.96 4.28 -895.70 -3.84 -15.80 16 12 C 0.07 1.94 5.42 86.31 0.47 2.41 16 13 C 0.07 2.61 5.43 86.31 0.47 3.08 16 14 N -0.55 -23.13 4.70 -900.28 -4.23 -27.37 16 15 C 0.21 11.15 4.72 85.55 0.40 11.55 16 16 C -0.52 -29.48 8.47 25.60 0.22 -29.27 16 17 H 0.06 3.41 7.13 -2.91 -0.02 3.39 16 18 C 0.00 0.11 5.46 84.66 0.46 0.58 16 19 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 20 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 C 0.05 1.80 5.61 86.31 0.48 2.29 16 25 C 0.07 1.76 5.61 86.31 0.48 2.24 16 26 C 0.12 1.77 5.25 86.36 0.45 2.22 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.55 6.20 -2.38 -0.01 1.53 16 30 H 0.07 1.43 7.00 -2.38 -0.02 1.42 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 2.12 6.25 -2.38 -0.01 2.10 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 2.53 6.79 -2.39 -0.02 2.52 16 42 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 43 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 44 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 45 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 47 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 48 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.09 1.61 5.41 -2.39 -0.01 1.59 16 Total: -1.00 -70.90 379.65 -1.30 -72.20 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.89 Total: 9.05 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.05 Total: 5.34 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -10.22 Total: -113.02 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.90 -1.30 -72.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208967684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.326 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds