Wall clock time and date at job start Tue Mar 31 2020 10:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00091 * 2 1 4 4 C 1.46907 * 110.99767 * 123.95022 * 2 1 3 5 5 H 1.08999 * 109.46853 * 54.99748 * 4 2 1 6 6 C 1.50698 * 109.47052 * 175.00507 * 4 2 1 7 7 O 1.21279 * 119.99956 * 8.23566 * 6 4 2 8 8 N 1.34778 * 119.99696 * 188.24431 * 6 4 2 9 9 C 1.46503 * 119.99649 * 174.96801 * 8 6 4 10 10 H 1.09000 * 109.47091 * 34.99883 * 9 8 6 11 11 C 1.52998 * 109.47205 * 275.00152 * 9 8 6 12 12 C 1.53002 * 109.46863 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47629 * 59.99548 * 12 11 9 14 14 C 1.52995 * 109.47019 * 300.00086 * 13 12 11 15 15 C 1.52997 * 109.46851 * 155.00149 * 9 8 6 16 16 H 1.09000 * 109.47491 * 59.99978 * 15 9 8 17 17 N 1.46508 * 109.47139 * 300.00278 * 15 9 8 18 18 C 1.36935 * 120.00047 * 155.00557 * 17 15 9 19 19 H 1.07998 * 119.99853 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99761 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99881 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46947 * 60.00539 * 22 20 18 24 24 H 1.48498 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47306 * 300.00007 * 22 20 18 26 26 C 1.53002 * 109.46987 * 294.99994 * 4 2 1 27 27 C 1.52996 * 117.49805 * 242.72367 * 26 4 2 28 28 C 1.52995 * 117.49831 * 174.05921 * 26 4 2 29 29 H 1.08998 * 109.47498 * 296.04884 * 1 2 3 30 30 H 1.08998 * 109.47106 * 56.05212 * 1 2 3 31 31 H 1.09000 * 109.47294 * 176.04729 * 1 2 3 32 32 H 1.08998 * 109.47091 * 183.94958 * 3 2 1 33 33 H 1.09007 * 109.46733 * 303.94966 * 3 2 1 34 34 H 1.09000 * 109.47078 * 63.94920 * 3 2 1 35 35 H 0.96992 * 120.00214 * 354.97222 * 8 6 4 36 36 H 1.08997 * 109.47456 * 60.00262 * 11 9 8 37 37 H 1.09000 * 109.46877 * 299.99862 * 11 9 8 38 38 H 1.09000 * 109.46874 * 299.99389 * 12 11 9 39 39 H 1.09007 * 109.47110 * 180.02562 * 12 11 9 40 40 H 1.09001 * 109.47207 * 179.97438 * 13 12 11 41 41 H 1.09005 * 109.46416 * 59.99976 * 13 12 11 42 42 H 1.09007 * 109.47111 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47814 * 299.99799 * 14 13 12 44 44 H 0.96999 * 119.99573 * 334.99299 * 17 15 9 45 45 H 0.97006 * 119.99684 * 179.97438 * 21 20 18 46 46 H 1.09008 * 115.55056 * 28.39733 * 26 4 2 47 47 H 1.08991 * 117.50357 * 359.97438 * 27 26 4 48 48 H 1.09001 * 117.49848 * 145.02831 * 27 26 4 49 49 H 1.09002 * 117.50190 * 214.97973 * 28 26 4 50 50 H 1.09004 * 117.50024 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.5752 -1.7716 1.1241 6 6 3.4968 -0.8472 1.0369 7 8 4.0842 -0.1979 0.1977 8 7 4.1867 -1.6416 1.8792 9 6 5.6327 -1.8064 1.7115 10 1 6.0672 -0.8692 1.3635 11 6 5.9048 -2.9071 0.6843 12 6 7.4150 -3.0796 0.5096 13 6 8.0427 -3.4665 1.8502 14 6 7.7706 -2.3657 2.8773 15 6 6.2608 -2.1931 3.0519 16 1 5.8263 -3.1302 3.3999 17 7 6.0001 -1.1391 4.0356 18 6 5.9888 -1.4374 5.3720 19 1 6.1715 -2.4497 5.7009 20 6 5.7423 -0.4385 6.3039 21 7 5.5201 0.7953 5.9030 22 14 5.7261 -0.8456 8.1270 23 1 7.0497 -1.3886 8.5247 24 1 5.4412 0.3858 8.9065 25 1 4.6738 -1.8575 8.3989 26 6 1.6090 -0.0694 2.4440 27 6 2.7431 0.4499 3.3300 28 6 1.9452 -0.7862 3.7531 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 3.7258 -2.1042 2.5964 36 1 5.4574 -2.6316 -0.2707 37 1 5.4703 -3.8442 1.0323 38 1 7.8498 -2.1425 0.1618 39 1 7.6089 -3.8635 -0.2226 40 1 9.1185 -3.5897 1.7255 41 1 7.6078 -4.4035 2.1979 42 1 8.2174 -2.6415 3.8325 43 1 8.2054 -1.4286 2.5296 44 1 5.8358 -0.2299 3.7401 45 1 5.3475 1.4932 6.5543 46 1 0.6884 0.5136 2.4115 47 1 3.7644 0.2949 2.9826 48 1 2.5686 1.3741 3.8808 49 1 1.2463 -0.6745 4.5821 50 1 2.4414 -1.7543 3.6838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226775015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:15 Heat of formation + Delta-G solvation = 10.838666 kcal Electronic energy + Delta-G solvation = -28278.798349 eV Core-core repulsion = 24728.244564 eV Total energy + Delta-G solvation = -3550.553786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48538 -38.44793 -36.82729 -35.60165 -34.00535 -33.46849 -31.12814 -29.60935 -28.27265 -27.39047 -27.26170 -23.72502 -22.85107 -22.44713 -22.03143 -21.11423 -20.63477 -19.87544 -19.00317 -17.18597 -16.52293 -16.40828 -15.64879 -15.45693 -14.86166 -14.52949 -14.29704 -14.01385 -13.91834 -13.57534 -13.49890 -13.08570 -12.93386 -12.76543 -12.52495 -12.30715 -12.10735 -12.00266 -11.73856 -11.62603 -11.24010 -11.07208 -10.94344 -10.91028 -10.74933 -10.72709 -10.54124 -10.30421 -10.19055 -10.02128 -9.87774 -9.71317 -9.60526 -9.11427 -8.89750 -8.48680 -8.12709 -6.97286 -5.77151 -3.06008 3.01775 3.37969 3.40704 3.45996 3.46866 4.13461 4.22685 4.55412 4.85643 4.99910 5.09019 5.14190 5.17791 5.24493 5.32808 5.39112 5.42662 5.53527 5.54382 5.56901 5.66826 5.73888 5.77842 5.83656 5.84819 5.90123 5.93229 5.97339 5.99683 6.10258 6.13896 6.26574 6.33046 6.42943 6.46936 6.50095 6.54827 6.56659 6.59035 6.75452 6.87977 6.96042 7.02318 7.13044 7.16533 7.67794 7.98122 8.39390 8.67463 9.51823 10.07560 10.43531 11.44004 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.006184 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.661979 B = 4526.594546 C = 6586.140090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.520 5.520 3 C 0.005 3.995 4 C 0.098 3.902 5 H 0.101 0.899 6 C 0.528 3.472 7 O -0.532 6.532 8 N -0.711 5.711 9 C 0.140 3.860 10 H 0.084 0.916 11 C -0.124 4.124 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.132 4.132 15 C 0.173 3.827 16 H 0.049 0.951 17 N -0.718 5.718 18 C -0.240 4.240 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.923 5.923 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.288 1.288 26 C -0.208 4.208 27 C -0.144 4.144 28 C -0.160 4.160 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.401 0.599 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -5.524 -10.202 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.142 4.142 4 C -0.014 4.014 5 H 0.119 0.881 6 C 0.314 3.686 7 O -0.409 6.409 8 N -0.363 5.363 9 C 0.035 3.965 10 H 0.102 0.898 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.157 4.157 14 C -0.173 4.173 15 C 0.062 3.938 16 H 0.067 0.933 17 N -0.359 5.359 18 C -0.371 4.371 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.571 5.571 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.215 1.215 26 C -0.228 4.228 27 C -0.181 4.181 28 C -0.198 4.198 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.238 0.762 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.132 0.868 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.926 -5.341 -11.075 13.649 hybrid contribution -0.652 0.321 2.266 2.380 sum -6.578 -5.020 -8.809 12.086 Atomic orbital electron populations 1.22440 0.87690 1.01999 1.00546 1.62035 1.07065 1.15296 1.39817 1.22805 1.04695 0.87323 0.99370 1.21265 0.92806 0.98783 0.88550 0.88139 1.20159 0.88960 0.78831 0.80688 1.90542 1.70702 1.43146 1.36523 1.46173 1.08956 1.48696 1.32510 1.21284 0.79924 0.99048 0.96256 0.89800 1.21874 0.96373 0.98795 0.99246 1.21467 0.95093 1.01221 0.97363 1.21578 0.99609 0.99211 0.95343 1.22208 0.99194 0.97661 0.98286 1.20447 0.92586 0.93219 0.87520 0.93329 1.42379 1.84885 1.06918 1.01751 1.19094 1.41175 0.94170 0.82666 0.91494 1.24649 1.02607 0.95530 0.97374 1.69648 1.54688 1.00014 1.32753 0.86388 0.77666 0.76731 0.86031 1.21486 1.21901 1.21478 1.22949 1.01891 1.06398 0.91557 1.23136 0.96600 0.97918 1.00482 1.22811 1.03494 0.97605 0.95844 0.95269 0.91389 0.91597 0.87496 0.92451 0.95693 0.76226 0.91959 0.92123 0.92003 0.92461 0.92762 0.92448 0.91664 0.92500 0.78149 0.93641 0.87593 0.86794 0.89133 0.89029 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.36 60.06 0.56 0.80 16 2 N -0.52 -7.27 4.85 -244.58 -1.19 -8.45 16 3 C 0.01 0.08 8.88 60.06 0.53 0.61 16 4 C 0.10 1.39 2.54 -68.86 -0.18 1.22 16 5 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 6 C 0.53 8.76 5.28 -10.99 -0.06 8.70 16 7 O -0.53 -10.31 13.22 5.56 0.07 -10.24 16 8 N -0.71 -11.31 3.58 -53.81 -0.19 -11.50 16 9 C 0.14 2.32 2.02 -67.93 -0.14 2.18 16 10 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 11 C -0.12 -1.74 5.50 -26.73 -0.15 -1.89 16 12 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 13 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.13 -2.25 5.50 -26.75 -0.15 -2.39 16 15 C 0.17 3.14 2.29 -67.95 -0.16 2.99 16 16 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 17 N -0.72 -16.21 4.95 -53.44 -0.26 -16.47 16 18 C -0.24 -6.09 9.93 -15.06 -0.15 -6.23 16 19 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -25.91 13.06 55.49 0.72 -25.19 16 22 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.21 -2.96 4.16 -90.62 -0.38 -3.33 16 27 C -0.14 -2.54 9.52 -26.69 -0.25 -2.79 16 28 C -0.16 -2.44 9.78 -26.69 -0.26 -2.70 16 29 H 0.03 0.31 6.28 -51.93 -0.33 -0.02 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 1.86 5.16 -51.93 -0.27 1.59 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.02 0.36 6.96 -51.93 -0.36 0.00 16 35 H 0.40 6.19 5.91 -40.82 -0.24 5.95 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.38 9.57 7.30 -40.82 -0.30 9.28 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.11 1.42 6.18 -51.92 -0.32 1.10 16 47 H 0.11 2.30 5.26 -51.93 -0.27 2.02 16 48 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 49 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.09 1.38 5.92 -51.93 -0.31 1.07 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -27.83 377.27 -10.03 -37.86 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -8.67 Total: 18.35 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.18 Total: -6.47 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.92 Total: -61.61 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.83 -10.03 -37.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226775015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.699 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds