Wall clock time and date at job start Tue Mar 31 2020 10:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00091 * 2 1 4 4 C 1.46907 * 110.99767 * 123.95022 * 2 1 3 5 5 H 1.08999 * 109.46853 * 54.99748 * 4 2 1 6 6 C 1.50698 * 109.47052 * 175.00507 * 4 2 1 7 7 O 1.21279 * 119.99956 * 8.23566 * 6 4 2 8 8 N 1.34778 * 119.99696 * 188.24431 * 6 4 2 9 9 C 1.46503 * 119.99649 * 174.96801 * 8 6 4 10 10 H 1.09000 * 109.47091 * 34.99883 * 9 8 6 11 11 C 1.52998 * 109.47205 * 275.00152 * 9 8 6 12 12 C 1.53002 * 109.46863 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47629 * 59.99548 * 12 11 9 14 14 C 1.52995 * 109.47019 * 300.00086 * 13 12 11 15 15 C 1.52997 * 109.46851 * 155.00149 * 9 8 6 16 16 H 1.09000 * 109.47491 * 59.99978 * 15 9 8 17 17 N 1.46508 * 109.47139 * 300.00278 * 15 9 8 18 18 C 1.36935 * 120.00047 * 155.00557 * 17 15 9 19 19 H 1.07998 * 119.99853 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99761 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99881 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46947 * 60.00539 * 22 20 18 24 24 H 1.48498 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47306 * 300.00007 * 22 20 18 26 26 C 1.53002 * 109.46987 * 294.99994 * 4 2 1 27 27 C 1.52996 * 117.49805 * 242.72367 * 26 4 2 28 28 C 1.52995 * 117.49831 * 174.05921 * 26 4 2 29 29 H 1.08998 * 109.47498 * 296.04884 * 1 2 3 30 30 H 1.08998 * 109.47106 * 56.05212 * 1 2 3 31 31 H 1.09000 * 109.47294 * 176.04729 * 1 2 3 32 32 H 1.08998 * 109.47091 * 183.94958 * 3 2 1 33 33 H 1.09007 * 109.46733 * 303.94966 * 3 2 1 34 34 H 1.09000 * 109.47078 * 63.94920 * 3 2 1 35 35 H 0.96992 * 120.00214 * 354.97222 * 8 6 4 36 36 H 1.08997 * 109.47456 * 60.00262 * 11 9 8 37 37 H 1.09000 * 109.46877 * 299.99862 * 11 9 8 38 38 H 1.09000 * 109.46874 * 299.99389 * 12 11 9 39 39 H 1.09007 * 109.47110 * 180.02562 * 12 11 9 40 40 H 1.09001 * 109.47207 * 179.97438 * 13 12 11 41 41 H 1.09005 * 109.46416 * 59.99976 * 13 12 11 42 42 H 1.09007 * 109.47111 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47814 * 299.99799 * 14 13 12 44 44 H 0.96999 * 119.99573 * 334.99299 * 17 15 9 45 45 H 0.97006 * 119.99684 * 179.97438 * 21 20 18 46 46 H 1.09008 * 115.55056 * 28.39733 * 26 4 2 47 47 H 1.08991 * 117.50357 * 359.97438 * 27 26 4 48 48 H 1.09001 * 117.49848 * 145.02831 * 27 26 4 49 49 H 1.09002 * 117.50190 * 214.97973 * 28 26 4 50 50 H 1.09004 * 117.50024 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.5752 -1.7716 1.1241 6 6 3.4968 -0.8472 1.0369 7 8 4.0842 -0.1979 0.1977 8 7 4.1867 -1.6416 1.8792 9 6 5.6327 -1.8064 1.7115 10 1 6.0672 -0.8692 1.3635 11 6 5.9048 -2.9071 0.6843 12 6 7.4150 -3.0796 0.5096 13 6 8.0427 -3.4665 1.8502 14 6 7.7706 -2.3657 2.8773 15 6 6.2608 -2.1931 3.0519 16 1 5.8263 -3.1302 3.3999 17 7 6.0001 -1.1391 4.0356 18 6 5.9888 -1.4374 5.3720 19 1 6.1715 -2.4497 5.7009 20 6 5.7423 -0.4385 6.3039 21 7 5.5201 0.7953 5.9030 22 14 5.7261 -0.8456 8.1270 23 1 7.0497 -1.3886 8.5247 24 1 5.4412 0.3858 8.9065 25 1 4.6738 -1.8575 8.3989 26 6 1.6090 -0.0694 2.4440 27 6 2.7431 0.4499 3.3300 28 6 1.9452 -0.7862 3.7531 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 3.7258 -2.1042 2.5964 36 1 5.4574 -2.6316 -0.2707 37 1 5.4703 -3.8442 1.0323 38 1 7.8498 -2.1425 0.1618 39 1 7.6089 -3.8635 -0.2226 40 1 9.1185 -3.5897 1.7255 41 1 7.6078 -4.4035 2.1979 42 1 8.2174 -2.6415 3.8325 43 1 8.2054 -1.4286 2.5296 44 1 5.8358 -0.2299 3.7401 45 1 5.3475 1.4932 6.5543 46 1 0.6884 0.5136 2.4115 47 1 3.7644 0.2949 2.9826 48 1 2.5686 1.3741 3.8808 49 1 1.2463 -0.6745 4.5821 50 1 2.4414 -1.7543 3.6838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226775015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:14 Heat of formation + Delta-G solvation = -6.569628 kcal Electronic energy + Delta-G solvation = -28279.553230 eV Core-core repulsion = 24728.244564 eV Total energy + Delta-G solvation = -3551.308666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77425 -39.75675 -38.15074 -36.77796 -35.74017 -34.79811 -32.91590 -30.87931 -29.69178 -28.64967 -28.38872 -25.56715 -24.00208 -23.67714 -23.36113 -22.55138 -21.88979 -21.16487 -20.33685 -19.01602 -17.81533 -17.71472 -17.01556 -16.73628 -16.40824 -15.85553 -15.59184 -15.47766 -15.25341 -14.94518 -14.75885 -14.56158 -14.28858 -14.02423 -13.88199 -13.53723 -13.38649 -13.31367 -12.88076 -12.78150 -12.75194 -12.71083 -12.40541 -12.33494 -12.20952 -12.04905 -12.02627 -11.96393 -11.58370 -11.39387 -11.28784 -11.13295 -11.03977 -10.83231 -10.38742 -9.82433 -9.22987 -8.89239 -7.81819 -5.09176 1.50228 1.51434 1.56503 1.71205 2.14520 2.61363 2.87439 3.10320 3.50671 3.63054 3.69912 3.81458 3.88112 3.97355 4.09962 4.17069 4.26800 4.30795 4.36073 4.38983 4.45555 4.48899 4.54227 4.55904 4.62809 4.73588 4.74631 4.82297 4.86359 4.97573 4.98597 5.04283 5.08856 5.15377 5.20081 5.25371 5.28456 5.31168 5.32523 5.36705 5.50435 5.59042 5.64289 5.76112 5.92339 6.13056 6.35716 6.68041 7.37290 7.44491 8.17753 8.43143 9.39293 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.006184 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.661979 B = 4526.594546 C = 6586.140090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.011 3.989 4 C 0.102 3.898 5 H 0.127 0.873 6 C 0.523 3.477 7 O -0.564 6.564 8 N -0.706 5.706 9 C 0.149 3.851 10 H 0.051 0.949 11 C -0.114 4.114 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.173 3.827 16 H 0.056 0.944 17 N -0.725 5.725 18 C -0.229 4.229 19 H 0.073 0.927 20 C -0.060 4.060 21 N -0.954 5.954 22 Si 0.956 3.044 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.279 1.279 26 C -0.173 4.173 27 C -0.174 4.174 28 C -0.152 4.152 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.404 0.596 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.370 0.630 45 H 0.244 0.756 46 H 0.122 0.878 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -8.071 -11.044 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.253 5.253 3 C -0.137 4.137 4 C -0.010 4.010 5 H 0.144 0.856 6 C 0.310 3.690 7 O -0.444 6.444 8 N -0.358 5.358 9 C 0.043 3.957 10 H 0.069 0.931 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.074 0.926 17 N -0.364 5.364 18 C -0.361 4.361 19 H 0.091 0.909 20 C -0.253 4.253 21 N -0.605 5.605 22 Si 0.787 3.213 23 H -0.213 1.213 24 H -0.232 1.232 25 H -0.205 1.205 26 C -0.193 4.193 27 C -0.211 4.211 28 C -0.189 4.189 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.242 0.758 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.201 0.799 45 H 0.053 0.947 46 H 0.140 0.860 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.119 0.881 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.205 -7.950 -11.930 16.045 hybrid contribution -0.212 1.114 2.474 2.721 sum -7.417 -6.836 -9.456 13.826 Atomic orbital electron populations 1.22551 0.85295 1.03483 1.01393 1.62041 1.09148 1.14571 1.39506 1.22656 1.02838 0.88228 0.99937 1.21305 0.90995 1.00158 0.88544 0.85556 1.20655 0.90141 0.78067 0.80090 1.90543 1.71609 1.44220 1.37980 1.46137 1.08649 1.48535 1.32462 1.21120 0.80137 0.98554 0.95881 0.93081 1.21805 0.97485 0.98206 0.97850 1.21468 0.93863 1.01786 0.97684 1.21508 1.00961 0.98032 0.94250 1.22086 0.97612 0.98412 0.98758 1.20627 0.93639 0.92029 0.87330 0.92614 1.42489 1.84903 1.07200 1.01793 1.19397 1.38754 0.94095 0.83827 0.90896 1.25260 1.03852 0.95603 1.00624 1.69813 1.56816 1.00698 1.33125 0.85480 0.77672 0.75974 0.82132 1.21336 1.23182 1.20525 1.22909 1.00509 1.04820 0.91070 1.22906 0.96418 0.98533 1.03288 1.22869 1.02703 0.96520 0.96834 0.94725 0.90164 0.89880 0.90677 0.90722 0.96079 0.75841 0.92518 0.90316 0.92998 0.89585 0.91075 0.90992 0.93280 0.94259 0.79851 0.94705 0.85991 0.89627 0.91035 0.88067 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.36 127.69 1.20 1.57 16 2 N -0.53 -13.87 4.85 -927.72 -4.50 -18.38 16 3 C 0.01 0.32 8.88 127.69 1.13 1.46 16 4 C 0.10 2.74 2.54 44.17 0.11 2.85 16 5 H 0.13 2.80 8.13 -2.39 -0.02 2.78 16 6 C 0.52 17.41 5.28 87.66 0.46 17.88 16 7 O -0.56 -22.52 13.22 -3.03 -0.04 -22.56 16 8 N -0.71 -22.43 3.58 -442.54 -1.58 -24.01 16 9 C 0.15 4.94 2.02 44.99 0.09 5.03 16 10 H 0.05 2.05 7.51 -2.39 -0.02 2.03 16 11 C -0.11 -3.03 5.50 30.59 0.17 -2.86 16 12 C -0.11 -2.60 5.92 30.59 0.18 -2.41 16 13 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 14 C -0.13 -4.30 5.50 30.58 0.17 -4.13 16 15 C 0.17 6.26 2.29 44.98 0.10 6.36 16 16 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 17 N -0.72 -33.50 4.95 -322.99 -1.60 -35.10 16 18 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 19 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 20 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 21 N -0.95 -55.45 13.06 21.65 0.28 -55.16 16 22 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 C -0.17 -4.72 4.16 -10.80 -0.04 -4.77 16 27 C -0.17 -6.32 9.52 30.62 0.29 -6.03 16 28 C -0.15 -4.49 9.78 30.62 0.30 -4.19 16 29 H 0.03 0.62 6.28 -2.39 -0.01 0.60 16 30 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.70 5.16 -2.39 -0.01 2.69 16 33 H 0.07 1.84 8.12 -2.38 -0.02 1.82 16 34 H 0.02 0.60 6.96 -2.39 -0.02 0.59 16 35 H 0.40 12.22 5.91 -92.71 -0.55 11.67 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.37 19.33 7.30 -92.71 -0.68 18.65 16 45 H 0.24 14.16 8.31 -92.70 -0.77 13.39 16 46 H 0.12 3.00 6.18 -2.38 -0.01 2.98 16 47 H 0.09 3.65 5.26 -2.39 -0.01 3.63 16 48 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 49 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.09 2.73 5.92 -2.38 -0.01 2.72 16 Total: -1.00 -62.30 377.27 -0.06 -62.37 By element: Atomic # 1 Polarization: 51.95 SS G_CDS: -0.29 Total: 51.66 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.64 Total: -5.39 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -7.40 Total: -132.66 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -62.30 -0.06 -62.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226775015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds