Wall clock time and date at job start Tue Mar 31 2020 10:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99943 * 2 1 4 4 C 1.53003 * 109.47370 * 125.00039 * 3 2 1 5 5 C 1.52995 * 109.47265 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47174 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46926 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.46758 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47006 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47303 * 55.00073 * 9 8 7 11 11 O 1.42901 * 109.47103 * 294.99795 * 9 8 7 12 12 C 1.53000 * 109.47269 * 175.00049 * 9 8 7 13 13 N 1.46892 * 109.47253 * 178.77456 * 12 9 8 14 14 C 1.46848 * 111.00173 * 51.94184 * 13 12 9 15 15 C 1.53039 * 109.52642 * 185.83638 * 14 13 12 16 16 C 1.53117 * 109.27851 * 300.82517 * 15 14 13 17 17 C 1.50704 * 109.57283 * 177.58813 * 16 15 14 18 18 H 1.07994 * 119.99817 * 240.28152 * 17 16 15 19 19 C 1.37874 * 119.99942 * 60.28710 * 17 16 15 20 20 N 1.31519 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00215 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 59.99150 * 21 19 17 23 23 H 1.48495 * 109.47466 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46705 * 299.99754 * 21 19 17 25 25 C 1.53118 * 109.16487 * 57.64969 * 16 15 14 26 26 C 1.46855 * 111.00112 * 176.15099 * 13 12 9 27 27 H 1.08002 * 119.99489 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00089 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99944 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47366 * 4.99476 * 3 2 1 31 31 H 1.09000 * 109.46820 * 244.99550 * 3 2 1 32 32 H 1.08997 * 109.47335 * 59.99419 * 4 3 2 33 33 H 1.09000 * 109.46749 * 299.99554 * 4 3 2 34 34 H 1.08997 * 109.47239 * 59.99580 * 5 4 3 35 35 H 1.09000 * 109.47052 * 299.99588 * 5 4 3 36 36 H 1.09007 * 109.46681 * 60.00446 * 6 5 4 37 37 H 1.08996 * 109.47498 * 300.00469 * 6 5 4 38 38 H 1.08997 * 109.46908 * 60.00794 * 7 6 5 39 39 H 1.09000 * 109.47358 * 300.00175 * 7 6 5 40 40 H 1.08997 * 109.47283 * 60.00051 * 8 7 6 41 41 H 1.09000 * 109.47060 * 300.00028 * 8 7 6 42 42 H 0.96701 * 114.00432 * 300.00267 * 11 9 8 43 43 H 1.09003 * 109.46938 * 298.77908 * 12 9 8 44 44 H 1.09001 * 109.47130 * 58.77031 * 12 9 8 45 45 H 1.08994 * 109.46456 * 305.85767 * 14 13 12 46 46 H 1.09009 * 109.46077 * 65.82492 * 14 13 12 47 47 H 1.08997 * 109.50444 * 180.88186 * 15 14 13 48 48 H 1.08999 * 109.53189 * 60.78428 * 15 14 13 49 49 H 1.09003 * 109.51933 * 297.74176 * 16 15 14 50 50 H 0.97004 * 120.00060 * 179.97438 * 20 19 17 51 51 H 1.09001 * 109.50244 * 182.40356 * 25 16 15 52 52 H 1.09003 * 109.53144 * 62.30688 * 25 16 15 53 53 H 1.09000 * 109.46218 * 294.17956 * 26 13 12 54 54 H 1.08994 * 109.45887 * 54.15668 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7716 2.6861 2.3632 7 6 5.5375 4.0107 2.3624 8 6 6.5091 4.0387 3.5441 9 6 7.2745 5.3634 3.5437 10 1 6.5665 6.1922 3.5435 11 8 8.0961 5.4385 2.3769 12 6 8.1542 5.4446 4.7929 13 7 8.9111 6.7033 4.7778 14 6 8.0193 7.8513 4.5703 15 6 8.8530 9.1253 4.4150 16 6 9.6983 9.3329 5.6747 17 6 10.5660 10.5533 5.5049 18 1 11.6412 10.4618 5.5494 19 6 9.9873 11.7866 5.2928 20 7 8.6780 11.8980 5.2381 21 14 11.0629 13.2992 5.0815 22 1 11.9529 13.1137 3.9074 23 1 10.2040 14.4915 4.8676 24 1 11.8871 13.4947 6.3013 25 6 10.5828 8.1027 5.8950 26 6 9.6990 6.8585 6.0074 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 3.7400 0.5066 1.0922 33 1 2.4773 1.2357 2.1130 34 1 3.0959 3.4846 1.2705 35 1 4.3584 2.7549 0.2499 36 1 5.4764 1.8593 2.2743 37 1 4.2136 2.5892 3.2945 38 1 4.8331 4.8377 2.4512 39 1 6.0957 4.1071 1.4312 40 1 7.2135 3.2116 3.4550 41 1 5.9512 3.9421 4.4755 42 1 8.7513 4.7303 2.3110 43 1 7.5257 5.4091 5.6828 44 1 8.8476 4.6036 4.8042 45 1 7.4269 7.6928 3.6692 46 1 7.3546 7.9546 5.4281 47 1 8.1901 9.9794 4.2766 48 1 9.5080 9.0288 3.5490 49 1 9.0427 9.4690 6.5348 50 1 8.2708 12.7658 5.0893 51 1 11.1558 8.2263 6.8139 52 1 11.2655 7.9892 5.0528 53 1 9.0265 6.9664 6.8584 54 1 10.3267 5.9789 6.1498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253239347.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:56 Heat of formation + Delta-G solvation = -91.673059 kcal Electronic energy + Delta-G solvation = -25331.175446 eV Core-core repulsion = 21879.716762 eV Total energy + Delta-G solvation = -3451.458684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25469 -38.52556 -37.53574 -35.68066 -35.40944 -33.41083 -32.87252 -31.48264 -30.41173 -28.48309 -26.93319 -25.01457 -24.06076 -23.32996 -22.07851 -21.91695 -21.59072 -20.54229 -20.34330 -18.44927 -17.34931 -17.16034 -16.72692 -16.59182 -16.14706 -15.98638 -15.73512 -15.26704 -14.99762 -14.71984 -14.68973 -14.45537 -14.26495 -14.01326 -13.72753 -13.55915 -13.26499 -13.06560 -12.84951 -12.78211 -12.63224 -12.50379 -12.36523 -12.24622 -12.05363 -12.03642 -11.87852 -11.82899 -11.58674 -11.55164 -11.45126 -11.30769 -11.28600 -10.82002 -10.69229 -10.49685 -10.35349 -10.16205 -9.11087 -8.07390 -6.21148 1.40978 1.41455 1.43005 1.50373 2.44107 2.98171 3.19211 3.61782 3.74457 3.90268 4.00734 4.09576 4.14418 4.18921 4.22611 4.27618 4.32315 4.36163 4.46347 4.47864 4.51933 4.61516 4.62996 4.72850 4.78003 4.82339 4.85112 4.89773 4.92854 4.94223 4.98358 5.05203 5.06663 5.11609 5.15244 5.16231 5.24163 5.24433 5.33069 5.36297 5.43260 5.53457 5.57743 5.57753 5.63236 5.77021 5.90973 6.00479 6.03400 6.31060 6.36911 6.41235 6.90363 7.04602 7.46510 8.97051 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.001809 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.431627 B =15470.768576 C =16126.962683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.097 4.097 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.138 4.138 9 C 0.110 3.890 10 H 0.076 0.924 11 O -0.565 6.565 12 C 0.023 3.977 13 N -0.533 5.533 14 C 0.070 3.930 15 C -0.093 4.093 16 C 0.044 3.956 17 C -0.535 4.535 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.918 5.918 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.099 4.099 26 C 0.065 3.935 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.383 0.617 43 H 0.038 0.962 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.009 0.991 47 H 0.058 0.942 48 H 0.026 0.974 49 H -0.014 1.014 50 H 0.260 0.740 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.019 0.981 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.272 -25.110 -6.969 28.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.179 4.179 3 C -0.135 4.135 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.177 4.177 9 C 0.051 3.949 10 H 0.094 0.906 11 O -0.371 6.371 12 C -0.105 4.105 13 N -0.258 5.258 14 C -0.058 4.058 15 C -0.131 4.131 16 C 0.025 3.975 17 C -0.573 4.573 18 H 0.069 0.931 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.780 3.220 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.137 4.137 26 C -0.063 4.063 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.231 0.769 43 H 0.056 0.944 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.004 0.996 50 H 0.069 0.931 51 H 0.072 0.928 52 H 0.069 0.931 53 H 0.037 0.963 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.447 -24.466 -7.487 28.030 hybrid contribution 0.063 0.914 0.834 1.239 sum -11.384 -23.552 -6.654 26.992 Atomic orbital electron populations 1.24015 0.96148 1.02334 1.01520 1.23120 0.96269 0.98890 0.99632 1.20807 0.98280 0.95230 0.99150 1.21496 0.97669 0.97636 0.97940 1.21601 0.98016 0.97469 0.98664 1.21554 0.97960 0.97090 0.98457 1.21479 0.97537 0.97634 0.98416 1.22186 0.99066 0.96802 0.99597 1.21945 0.91058 0.97905 0.84024 0.90570 1.86593 1.51798 1.55613 1.43117 1.22941 0.96961 0.92598 0.97961 1.61916 1.25613 1.01872 1.36357 1.22032 0.93965 0.91119 0.98641 1.21385 0.98312 0.95143 0.98293 1.18663 0.93445 0.92425 0.92947 1.21572 0.93161 0.93541 1.49061 0.93071 1.25763 0.96169 1.01783 0.94971 1.70022 1.10425 1.24689 1.50666 0.85676 0.78775 0.78782 0.78810 1.19748 1.20916 1.19553 1.21532 0.97785 0.94302 1.00086 1.22069 0.95985 0.98608 0.89609 0.88595 0.87743 0.86827 0.91878 0.90845 0.91462 0.92215 0.92595 0.92053 0.91393 0.91993 0.93269 0.92099 0.89946 0.90653 0.76861 0.94402 0.88705 0.91089 0.97307 0.92400 0.95519 0.99551 0.93119 0.92818 0.93138 0.96294 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 14.32 67.77 0.97 -1.30 16 2 C -0.16 -1.86 9.52 25.64 0.24 -1.62 16 3 C -0.10 -1.14 5.66 29.85 0.17 -0.98 16 4 C -0.11 -1.28 5.20 30.59 0.16 -1.12 16 5 C -0.12 -1.58 5.21 30.59 0.16 -1.42 16 6 C -0.11 -1.52 5.21 30.60 0.16 -1.36 16 7 C -0.11 -1.91 5.11 30.60 0.16 -1.76 16 8 C -0.14 -2.29 4.89 30.60 0.15 -2.14 16 9 C 0.11 2.59 2.38 30.59 0.07 2.67 16 10 H 0.08 2.14 6.27 -2.39 -0.01 2.13 16 11 O -0.56 -14.72 12.72 -148.98 -1.89 -16.61 16 12 C 0.02 0.59 4.79 86.30 0.41 1.00 16 13 N -0.53 -18.54 4.61 -896.36 -4.13 -22.67 16 14 C 0.07 2.88 5.04 86.33 0.43 3.32 16 15 C -0.09 -4.72 5.12 30.65 0.16 -4.56 16 16 C 0.04 2.30 2.16 -11.46 -0.02 2.28 16 17 C -0.54 -30.78 8.56 25.60 0.22 -30.56 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.66 5.31 84.65 0.45 1.11 16 20 N -0.92 -54.81 11.37 21.45 0.24 -54.57 16 21 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 C -0.10 -4.27 5.32 30.64 0.16 -4.10 16 26 C 0.06 2.28 5.46 86.32 0.47 2.75 16 27 H 0.10 1.03 7.84 -2.91 -0.02 1.01 16 28 H 0.10 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.38 7.12 9.05 -74.06 -0.67 6.45 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.79 5.87 -2.39 -0.01 2.78 16 46 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.06 3.29 6.17 -2.39 -0.01 3.28 16 48 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 49 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 50 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 51 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 53 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 Total: -1.00 -65.04 416.48 0.91 -64.14 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.14 Total: 20.54 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 4.52 Total: -37.79 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.89 Total: -77.24 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.89 Total: -16.61 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.04 0.91 -64.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253239347.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.537 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds