Wall clock time and date at job start Tue Mar 31 2020 10:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47452 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47452 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 H 1.08990 * 109.47368 * 54.99829 * 9 8 7 11 11 O 1.42899 * 109.46838 * 294.99746 * 9 8 7 12 12 C 1.53002 * 109.47227 * 175.00139 * 9 8 7 13 13 N 1.46898 * 109.47132 * 184.99731 * 12 9 8 14 14 C 1.46899 * 110.99774 * 179.97438 * 13 12 9 15 15 H 1.09000 * 109.41404 * 324.85830 * 14 13 12 16 16 C 1.52959 * 109.41479 * 84.64878 * 14 13 12 17 17 C 1.53228 * 109.40295 * 183.70414 * 16 14 13 18 18 C 1.51271 * 108.53802 * 305.37020 * 17 16 14 19 19 C 1.37875 * 120.85185 * 231.37025 * 18 17 16 20 20 N 1.31513 * 119.99998 * 179.97438 * 19 18 17 21 21 Si 1.86798 * 120.00053 * 359.97438 * 19 18 17 22 22 H 1.48499 * 109.47396 * 59.99593 * 21 19 18 23 23 H 1.48497 * 109.47408 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47215 * 299.99896 * 21 19 18 25 25 C 1.51273 * 118.29955 * 51.35041 * 18 17 16 26 26 C 1.52958 * 109.41180 * 205.00288 * 14 13 12 27 27 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 31 31 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 34 34 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 35 35 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 36 36 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 37 37 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 38 38 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 39 39 H 1.09001 * 109.46812 * 59.99783 * 7 6 5 40 40 H 1.09002 * 109.47153 * 299.99992 * 8 7 6 41 41 H 1.09001 * 109.46832 * 59.99801 * 8 7 6 42 42 H 0.96696 * 114.00710 * 300.00342 * 11 9 8 43 43 H 1.08998 * 109.47091 * 305.00209 * 12 9 8 44 44 H 1.09004 * 109.46934 * 64.99781 * 12 9 8 45 45 H 1.00897 * 111.00178 * 303.94959 * 13 12 9 46 46 H 1.08995 * 109.48127 * 303.68020 * 16 14 13 47 47 H 1.08995 * 109.47866 * 63.72229 * 16 14 13 48 48 H 1.08998 * 109.62581 * 185.65831 * 17 16 14 49 49 H 1.08996 * 109.78731 * 65.18271 * 17 16 14 50 50 H 0.97004 * 119.99933 * 180.02562 * 20 19 18 51 51 H 1.08992 * 109.62705 * 188.93989 * 25 18 17 52 52 H 1.09001 * 109.78412 * 68.45657 * 25 18 17 53 53 H 1.09007 * 109.48503 * 296.27325 * 26 14 13 54 54 H 1.09002 * 109.48481 * 56.31240 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 6 4.7714 2.6861 2.3633 7 6 5.5365 4.0112 2.3633 8 6 6.5080 4.0392 3.5450 9 6 7.2725 5.3645 3.5453 10 1 6.5640 6.1927 3.5455 11 8 8.0940 5.4407 2.3786 12 6 8.1521 5.4456 4.7946 13 7 8.7939 6.7655 4.8568 14 6 9.6478 6.8800 6.0466 15 1 9.1935 6.3330 6.8727 16 6 11.0250 6.2877 5.7429 17 6 11.8851 6.3230 7.0106 18 6 11.9182 7.7434 7.5298 19 6 13.1157 8.3629 7.8187 20 7 13.1250 9.5985 8.2688 21 14 14.7247 7.4470 7.5707 22 1 14.8576 7.0569 6.1441 23 1 15.8589 8.3271 7.9504 24 1 14.7369 6.2289 8.4200 25 6 10.6040 8.4670 7.7236 26 6 9.7903 8.3539 6.4301 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 2.4772 1.2357 2.1130 33 1 3.7399 0.5067 1.0922 34 1 4.3582 2.7549 0.2499 35 1 3.0957 3.4846 1.2707 36 1 4.2132 2.5893 3.2945 37 1 5.4762 1.8594 2.2744 38 1 6.0946 4.1085 1.4321 39 1 4.8314 4.8377 2.4524 40 1 5.9502 3.9417 4.4763 41 1 7.2129 3.2127 3.4554 42 1 8.7497 4.7331 2.3122 43 1 7.5369 5.2984 5.6823 44 1 8.9178 4.6709 4.7507 45 1 9.3185 6.9525 4.0155 46 1 10.9115 5.2562 5.4093 47 1 11.5075 6.8723 4.9598 48 1 12.8977 5.9956 6.7752 49 1 11.4547 5.6667 7.7669 50 1 13.9675 10.0344 8.4717 51 1 10.7936 9.5170 7.9462 52 1 10.0503 8.0127 8.5452 53 1 10.3022 8.8897 5.6306 54 1 8.8018 8.7869 6.5833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253250462.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:04 Heat of formation + Delta-G solvation = -108.551157 kcal Electronic energy + Delta-G solvation = -24930.494844 eV Core-core repulsion = 21478.304270 eV Total energy + Delta-G solvation = -3452.190574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.76708 -38.63134 -37.58121 -35.70881 -35.40916 -33.49102 -32.94133 -31.47514 -30.53410 -28.86048 -27.01987 -24.80419 -23.46111 -23.02099 -22.53225 -21.89369 -21.77977 -21.03193 -20.54280 -18.18603 -17.28497 -17.14412 -16.68691 -16.45286 -16.29799 -15.95697 -15.42273 -15.07164 -15.01756 -14.77703 -14.63751 -14.51359 -14.09006 -13.90619 -13.77173 -13.66767 -13.36839 -13.12864 -12.94646 -12.72785 -12.60805 -12.55037 -12.40265 -12.24272 -12.06997 -12.00425 -11.87584 -11.64997 -11.59304 -11.55982 -11.50604 -11.46320 -11.28760 -10.92016 -10.68654 -10.56079 -10.47190 -10.16258 -9.15761 -8.17119 -6.11232 1.37947 1.38041 1.41467 1.47009 2.39417 3.05148 3.21103 3.64286 3.75631 3.99578 4.01689 4.07885 4.12511 4.18187 4.21103 4.26523 4.31429 4.38525 4.50513 4.55524 4.58815 4.61760 4.73522 4.76741 4.83407 4.86692 4.89447 4.94387 5.00599 5.05190 5.06174 5.08699 5.10998 5.14180 5.15909 5.19676 5.23526 5.25774 5.36322 5.40692 5.43744 5.53983 5.56988 5.57981 5.63017 5.77223 5.78074 5.85542 5.90826 6.25729 6.35476 6.60209 6.90341 6.95760 7.46330 8.94151 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.001630 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.187101 B =17173.857211 C =17413.390416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.142 4.142 9 C 0.117 3.883 10 H 0.091 0.909 11 O -0.573 6.573 12 C 0.029 3.971 13 N -0.688 5.688 14 C 0.111 3.889 15 H 0.062 0.938 16 C -0.125 4.125 17 C -0.011 4.011 18 C -0.500 4.500 19 C 0.018 3.982 20 N -0.933 5.933 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.007 3.993 26 C -0.084 4.084 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.382 0.618 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.342 0.658 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.023 0.977 49 H 0.021 0.979 50 H 0.262 0.738 51 H 0.022 0.978 52 H -0.002 1.002 53 H 0.032 0.968 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.955 -19.117 -16.031 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.180 4.180 3 C -0.134 4.134 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.180 4.180 9 C 0.057 3.943 10 H 0.109 0.891 11 O -0.380 6.380 12 C -0.100 4.100 13 N -0.318 5.318 14 C 0.002 3.998 15 H 0.080 0.920 16 C -0.164 4.164 17 C -0.049 4.049 18 C -0.520 4.520 19 C -0.179 4.179 20 N -0.573 5.573 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.191 1.191 25 C -0.031 4.031 26 C -0.123 4.123 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.231 0.769 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.161 0.839 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.017 0.983 53 H 0.051 0.949 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.771 -18.144 -15.792 31.781 hybrid contribution 2.141 -0.862 0.214 2.318 sum -18.631 -19.007 -15.577 30.838 Atomic orbital electron populations 1.24014 0.96128 1.02356 1.01459 1.23122 0.96298 0.98927 0.99691 1.20801 0.98260 0.95196 0.99096 1.21506 0.97684 0.97729 0.97974 1.21588 0.97990 0.97434 0.98575 1.21573 0.97992 0.97242 0.98527 1.21464 0.97526 0.97607 0.98212 1.22196 0.99097 0.96893 0.99822 1.21911 0.91171 0.98152 0.83019 0.89089 1.86574 1.51948 1.55364 1.44098 1.22737 0.97667 0.89935 0.99703 1.60605 1.36154 1.29821 1.05259 1.21207 0.90652 0.95951 0.92009 0.92011 1.22098 0.97074 0.98781 0.98443 1.19604 0.95633 0.95226 0.94429 1.20683 0.92020 0.98097 1.41158 1.25647 1.01828 0.95418 0.95050 1.69978 1.27298 1.13568 1.46447 0.85766 0.79330 0.78555 0.79146 1.19130 1.22053 1.19135 1.19346 0.93749 0.97037 0.93016 1.21400 0.97524 0.95466 0.97887 0.88453 0.87847 0.87006 0.90819 0.91685 0.92263 0.91724 0.92001 0.92260 0.92057 0.91844 0.92060 0.92615 0.90581 0.90839 0.76914 0.90581 0.94584 0.83940 0.92510 0.93799 0.95808 0.96013 0.92858 0.95952 0.98335 0.94902 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.16 -1.75 9.52 25.65 0.24 -1.50 16 3 C -0.10 -1.01 5.66 29.85 0.17 -0.84 16 4 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 5 C -0.12 -1.35 5.21 30.59 0.16 -1.19 16 6 C -0.12 -1.40 5.21 30.60 0.16 -1.24 16 7 C -0.11 -1.59 5.11 30.60 0.16 -1.43 16 8 C -0.14 -2.10 4.89 30.59 0.15 -1.95 16 9 C 0.12 2.30 3.20 30.59 0.10 2.40 16 10 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 11 O -0.57 -11.83 12.39 -148.98 -1.85 -13.67 16 12 C 0.03 0.68 5.15 86.30 0.44 1.13 16 13 N -0.69 -20.99 6.24 -491.71 -3.07 -24.06 16 14 C 0.11 4.11 2.36 44.89 0.11 4.22 16 15 H 0.06 2.32 7.80 -2.39 -0.02 2.30 16 16 C -0.12 -4.74 5.20 30.66 0.16 -4.58 16 17 C -0.01 -0.48 5.59 30.11 0.17 -0.32 16 18 C -0.50 -26.77 5.51 -16.17 -0.09 -26.85 16 19 C 0.02 1.03 5.46 84.65 0.46 1.49 16 20 N -0.93 -56.02 12.73 21.45 0.27 -55.75 16 21 Si 0.95 44.05 26.80 68.60 1.84 45.89 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.01 0.34 5.97 30.11 0.18 0.52 16 26 C -0.08 -3.69 5.54 30.66 0.17 -3.52 16 27 H 0.10 0.94 7.84 -2.91 -0.02 0.91 16 28 H 0.10 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.69 7.79 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.38 5.49 9.05 -74.06 -0.67 4.82 16 43 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 44 H 0.04 0.80 7.35 -2.38 -0.02 0.79 16 45 H 0.34 10.49 8.04 -89.70 -0.72 9.77 16 46 H 0.06 1.83 7.35 -2.39 -0.02 1.81 16 47 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.02 1.05 5.17 -2.39 -0.01 1.03 16 49 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.02 1.28 7.07 -2.39 -0.02 1.26 16 52 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 53 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 54 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -61.43 416.64 0.50 -60.93 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.56 Total: 22.46 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.87 Total: -35.80 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.80 Total: -79.81 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.85 Total: -13.67 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.84 Total: 45.89 kcal Total: -61.43 0.50 -60.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253250462.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.622 kcal (2) G-P(sol) polarization free energy of solvation -61.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds