Wall clock time and date at job start Tue Mar 31 2020 10:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00423 * 2 1 4 4 C 1.52993 * 109.47453 * 124.99658 * 3 2 1 5 5 C 1.53006 * 109.47347 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47190 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46859 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47195 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47178 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47042 * 55.00298 * 9 8 7 11 11 O 1.42891 * 109.47114 * 294.99758 * 9 8 7 12 12 C 1.53000 * 109.46806 * 174.99831 * 9 8 7 13 13 N 1.46900 * 109.47201 * 185.00089 * 12 9 8 14 14 C 1.46899 * 111.00500 * 180.02562 * 13 12 9 15 15 H 1.09002 * 109.35082 * 324.82430 * 14 13 12 16 16 C 1.52958 * 109.41167 * 84.64288 * 14 13 12 17 17 C 1.53230 * 109.40140 * 183.70767 * 16 14 13 18 18 C 1.51275 * 108.53711 * 305.37328 * 17 16 14 19 19 C 1.37877 * 120.85195 * 231.32607 * 18 17 16 20 20 N 1.31513 * 120.00019 * 180.02562 * 19 18 17 21 21 Si 1.86802 * 119.99863 * 0.02562 * 19 18 17 22 22 H 1.48506 * 109.47206 * 89.99820 * 21 19 18 23 23 H 1.48496 * 109.47089 * 210.00048 * 21 19 18 24 24 H 1.48501 * 109.47213 * 329.99933 * 21 19 18 25 25 C 1.51268 * 118.29903 * 51.35065 * 18 17 16 26 26 C 1.52955 * 109.41291 * 205.00215 * 14 13 12 27 27 H 1.08005 * 119.99694 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00416 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99963 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.46757 * 4.99494 * 3 2 1 31 31 H 1.09002 * 109.47045 * 244.99960 * 3 2 1 32 32 H 1.09008 * 109.47274 * 60.00152 * 4 3 2 33 33 H 1.08993 * 109.47473 * 300.00202 * 4 3 2 34 34 H 1.08994 * 109.46923 * 59.99622 * 5 4 3 35 35 H 1.09002 * 109.47051 * 300.00240 * 5 4 3 36 36 H 1.08994 * 109.47930 * 59.99708 * 6 5 4 37 37 H 1.09001 * 109.46856 * 299.99255 * 6 5 4 38 38 H 1.09000 * 109.47858 * 59.99483 * 7 6 5 39 39 H 1.09002 * 109.46977 * 299.99461 * 7 6 5 40 40 H 1.09000 * 109.46946 * 59.99162 * 8 7 6 41 41 H 1.09002 * 109.46912 * 299.99738 * 8 7 6 42 42 H 0.96702 * 114.00215 * 299.99805 * 11 9 8 43 43 H 1.09005 * 109.47294 * 65.00102 * 12 9 8 44 44 H 1.09005 * 109.47312 * 304.99736 * 12 9 8 45 45 H 1.00901 * 110.99904 * 303.95576 * 13 12 9 46 46 H 1.09002 * 109.48188 * 63.73435 * 16 14 13 47 47 H 1.08993 * 109.48529 * 303.68922 * 16 14 13 48 48 H 1.09003 * 109.62537 * 185.66250 * 17 16 14 49 49 H 1.08999 * 109.62970 * 65.08783 * 17 16 14 50 50 H 0.97003 * 119.99860 * 179.97438 * 20 19 18 51 51 H 1.08999 * 109.62523 * 188.93910 * 25 18 17 52 52 H 1.08996 * 109.78786 * 68.46038 * 25 18 17 53 53 H 1.08988 * 109.48772 * 56.31541 * 26 14 13 54 54 H 1.09004 * 109.47866 * 296.26714 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7716 2.6861 2.3632 7 6 5.5358 4.0116 2.3638 8 6 6.5073 4.0396 3.5455 9 6 7.2719 5.3649 3.5458 10 1 6.5633 6.1931 3.5460 11 8 8.0934 5.4411 2.3791 12 6 8.1514 5.4459 4.7951 13 7 8.7933 6.7658 4.8573 14 6 9.6481 6.8801 6.0465 15 1 9.1932 6.3330 6.8723 16 6 11.0250 6.2878 5.7416 17 6 11.8860 6.3227 7.0086 18 6 11.9196 7.7430 7.5283 19 6 13.1172 8.3620 7.8173 20 7 13.1268 9.5972 8.2687 21 14 14.7261 7.4463 7.5676 22 1 15.2215 7.6831 6.1878 23 1 15.7310 7.9356 8.5453 24 1 14.5047 5.9920 7.7712 25 6 10.6055 8.4665 7.7232 26 6 9.7908 8.3538 6.4303 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 3.7400 0.5064 1.0921 33 1 2.4773 1.2356 2.1129 34 1 3.0946 3.4846 1.2716 35 1 4.3575 2.7562 0.2506 36 1 5.4768 1.8598 2.2732 37 1 4.2141 2.5881 3.2947 38 1 4.8304 4.8377 2.4542 39 1 6.0932 4.1100 1.4323 40 1 7.2127 3.2135 3.4556 41 1 5.9495 3.9414 4.4768 42 1 8.7491 4.7334 2.3129 43 1 8.9171 4.6713 4.7513 44 1 7.5361 5.2990 5.6828 45 1 9.3179 6.9528 4.0160 46 1 11.5070 6.8727 4.9583 47 1 10.9113 5.2565 5.4077 48 1 12.8985 5.9953 6.7723 49 1 11.4531 5.6667 7.7638 50 1 13.9694 10.0326 8.4724 51 1 10.7953 9.5165 7.9460 52 1 10.0525 8.0120 8.5452 53 1 8.8026 8.7867 6.5845 54 1 10.3021 8.8898 5.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253250465.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:12 Heat of formation + Delta-G solvation = -107.246640 kcal Electronic energy + Delta-G solvation = -24931.180184 eV Core-core repulsion = 21479.046178 eV Total energy + Delta-G solvation = -3452.134005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76680 -38.63017 -37.58102 -35.70819 -35.40843 -33.48876 -32.94009 -31.47397 -30.53403 -28.85991 -27.01933 -24.80394 -23.46435 -23.01631 -22.53311 -21.89403 -21.78016 -21.02872 -20.54225 -18.19683 -17.28484 -17.14924 -16.68780 -16.42950 -16.30175 -15.95917 -15.42510 -15.07212 -15.02180 -14.77544 -14.63775 -14.52021 -14.07489 -13.91976 -13.77742 -13.66709 -13.37433 -13.15679 -12.95044 -12.73088 -12.61759 -12.60470 -12.39845 -12.24321 -12.06921 -11.88367 -11.87556 -11.63661 -11.59100 -11.56057 -11.47306 -11.41182 -11.28782 -10.92311 -10.67514 -10.55173 -10.46877 -10.16237 -9.15256 -8.16536 -6.10781 1.36986 1.39329 1.41443 1.48500 2.40072 3.05839 3.21268 3.64251 3.75648 3.99668 4.01659 4.08117 4.12480 4.18174 4.21256 4.26684 4.32013 4.38534 4.50496 4.55866 4.58805 4.61919 4.74032 4.76671 4.83395 4.86713 4.89458 4.94374 5.01528 5.05309 5.07190 5.08845 5.10984 5.14156 5.15911 5.22531 5.23636 5.25804 5.36296 5.40866 5.43716 5.53959 5.57708 5.57959 5.63686 5.77205 5.78324 5.85600 5.90810 6.25740 6.36108 6.60315 6.90320 6.96466 7.46884 8.94701 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.041032 B = 0.001630 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.236863 B =17173.335112 C =17413.287336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.142 4.142 9 C 0.117 3.883 10 H 0.091 0.909 11 O -0.573 6.573 12 C 0.029 3.971 13 N -0.688 5.688 14 C 0.111 3.889 15 H 0.061 0.939 16 C -0.125 4.125 17 C -0.015 4.015 18 C -0.499 4.499 19 C 0.017 3.983 20 N -0.934 5.934 21 Si 0.944 3.056 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.253 1.253 25 C 0.006 3.994 26 C -0.084 4.084 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.382 0.618 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.342 0.658 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.019 0.981 50 H 0.262 0.738 51 H 0.021 0.979 52 H -0.002 1.002 53 H 0.044 0.956 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 -19.169 -16.059 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.180 4.180 3 C -0.134 4.134 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.180 4.180 9 C 0.058 3.942 10 H 0.109 0.891 11 O -0.380 6.380 12 C -0.100 4.100 13 N -0.318 5.318 14 C 0.002 3.998 15 H 0.079 0.921 16 C -0.164 4.164 17 C -0.053 4.053 18 C -0.518 4.518 19 C -0.181 4.181 20 N -0.574 5.574 21 Si 0.770 3.230 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.177 1.177 25 C -0.032 4.032 26 C -0.123 4.123 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.231 0.769 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.161 0.839 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.016 0.984 53 H 0.062 0.938 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.667 -18.200 -15.819 31.758 hybrid contribution 2.111 -0.820 0.223 2.276 sum -18.555 -19.020 -15.596 30.811 Atomic orbital electron populations 1.24015 0.96127 1.02355 1.01461 1.23125 0.96297 0.98928 0.99689 1.20800 0.98259 0.95197 0.99097 1.21507 0.97690 0.97723 0.97971 1.21589 0.97986 0.97430 0.98581 1.21570 0.97991 0.97239 0.98532 1.21464 0.97531 0.97603 0.98209 1.22198 0.99097 0.96894 0.99821 1.21908 0.91169 0.98150 0.83018 0.89097 1.86574 1.51942 1.55368 1.44085 1.22737 0.97665 0.89942 0.99693 1.60618 1.36137 1.29815 1.05276 1.21210 0.90710 0.95935 0.91990 0.92103 1.22107 0.97051 0.98742 0.98526 1.19717 0.96082 0.95139 0.94339 1.20690 0.91964 0.98093 1.41101 1.25671 1.01925 0.95430 0.95039 1.69991 1.27211 1.13695 1.46478 0.85760 0.79510 0.79842 0.77887 1.20012 1.21877 1.17733 1.19349 0.93809 0.97025 0.93002 1.21395 0.97500 0.95477 0.97891 0.88455 0.87846 0.87005 0.91687 0.90817 0.91715 0.92271 0.92254 0.92005 0.91836 0.92065 0.92623 0.92048 0.90843 0.90586 0.76907 0.94585 0.90616 0.83941 0.93713 0.92558 0.95247 0.96277 0.92892 0.95987 0.98397 0.93759 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.16 -1.75 9.52 25.64 0.24 -1.50 16 3 C -0.10 -1.01 5.66 29.84 0.17 -0.84 16 4 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 5 C -0.12 -1.35 5.21 30.59 0.16 -1.19 16 6 C -0.12 -1.40 5.21 30.59 0.16 -1.24 16 7 C -0.11 -1.59 5.11 30.59 0.16 -1.43 16 8 C -0.14 -2.10 4.89 30.60 0.15 -1.95 16 9 C 0.12 2.30 3.20 30.60 0.10 2.40 16 10 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 11 O -0.57 -11.83 12.39 -148.98 -1.85 -13.67 16 12 C 0.03 0.69 5.15 86.30 0.44 1.13 16 13 N -0.69 -21.04 6.24 -491.71 -3.07 -24.11 16 14 C 0.11 4.11 2.36 44.89 0.11 4.22 16 15 H 0.06 2.29 7.80 -2.39 -0.02 2.28 16 16 C -0.12 -4.74 5.20 30.66 0.16 -4.58 16 17 C -0.01 -0.66 5.59 30.11 0.17 -0.49 16 18 C -0.50 -26.70 5.51 -16.17 -0.09 -26.79 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.93 -56.08 12.73 21.45 0.27 -55.81 16 21 Si 0.94 43.69 27.27 68.60 1.87 45.56 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.25 -10.96 6.46 99.48 0.64 -10.32 16 25 C 0.01 0.32 5.97 30.11 0.18 0.50 16 26 C -0.08 -3.69 5.54 30.66 0.17 -3.52 16 27 H 0.10 0.94 7.84 -2.91 -0.02 0.91 16 28 H 0.10 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.06 0.69 7.79 -2.38 -0.02 0.67 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.97 7.82 -2.39 -0.02 0.96 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.38 5.49 9.05 -74.06 -0.67 4.82 16 43 H 0.04 0.81 7.35 -2.38 -0.02 0.79 16 44 H 0.08 1.79 8.05 -2.38 -0.02 1.77 16 45 H 0.34 10.49 8.04 -89.69 -0.72 9.77 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.81 7.35 -2.39 -0.02 1.79 16 48 H 0.03 1.30 4.78 -2.39 -0.01 1.29 16 49 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 51 H 0.02 1.26 7.07 -2.39 -0.02 1.24 16 52 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 53 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 54 H 0.03 1.51 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -61.53 416.08 0.47 -61.06 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.62 Total: 23.00 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.87 Total: -36.02 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.80 Total: -79.92 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.85 Total: -13.67 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.87 Total: 45.56 kcal Total: -61.53 0.47 -61.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253250465.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.187 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds