Wall clock time and date at job start Tue Mar 31 2020 09:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46954 * 111.00171 * 2 1 4 4 C 1.53045 * 109.36438 * 183.18464 * 3 2 1 5 5 N 1.46958 * 109.36552 * 301.60107 * 4 3 2 6 6 C 1.46906 * 111.00081 * 183.18707 * 5 4 3 7 7 C 1.53944 * 113.74248 * 164.71839 * 6 5 4 8 8 N 1.47802 * 86.03824 * 222.08710 * 7 6 5 9 9 C 1.34780 * 134.45724 * 204.64737 * 8 7 6 10 10 O 1.21282 * 120.00412 * 179.86727 * 9 8 7 11 11 C 1.50700 * 120.00226 * 359.86262 * 9 8 7 12 12 C 1.52992 * 109.47634 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47307 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47310 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47166 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00550 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99659 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99798 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00146 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46599 * 90.00398 * 19 17 15 21 21 H 1.48502 * 109.46919 * 209.99994 * 19 17 15 22 22 H 1.48496 * 109.47357 * 330.00064 * 19 17 15 23 23 C 1.47582 * 91.05516 * 24.55102 * 8 7 6 24 24 C 1.46954 * 110.88178 * 59.31914 * 5 4 3 25 25 C 1.46958 * 110.99701 * 123.80039 * 2 1 3 26 26 H 1.09001 * 109.46324 * 60.00228 * 1 2 3 27 27 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47029 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.48514 * 63.21810 * 3 2 1 30 30 H 1.08994 * 109.51137 * 303.16715 * 3 2 1 31 31 H 1.09004 * 109.48757 * 181.63451 * 4 3 2 32 32 H 1.08996 * 109.48910 * 61.56935 * 4 3 2 33 33 H 1.08994 * 112.94649 * 296.31538 * 6 5 4 34 34 H 1.08999 * 113.76883 * 336.35461 * 7 6 5 35 35 H 1.09000 * 113.76742 * 107.74781 * 7 6 5 36 36 H 1.09005 * 109.47077 * 300.00864 * 11 9 8 37 37 H 1.09006 * 109.46537 * 60.00224 * 11 9 8 38 38 H 1.09000 * 109.47150 * 300.00712 * 12 11 9 39 39 H 1.08999 * 109.46951 * 59.99766 * 12 11 9 40 40 H 1.09005 * 109.47330 * 299.99876 * 13 12 11 41 41 H 1.08996 * 109.47031 * 60.00140 * 13 12 11 42 42 H 1.09005 * 109.46656 * 300.00085 * 14 13 12 43 43 H 1.08999 * 109.47117 * 59.99465 * 14 13 12 44 44 H 0.96996 * 119.99897 * 180.02562 * 18 17 15 45 45 H 1.09001 * 113.77141 * 221.15493 * 23 8 7 46 46 H 1.08999 * 113.86948 * 89.76448 * 23 8 7 47 47 H 1.09005 * 109.48514 * 60.64808 * 24 5 4 48 48 H 1.08998 * 109.49048 * 180.70699 * 24 5 4 49 49 H 1.08996 * 109.48921 * 296.78021 * 25 2 1 50 50 H 1.09001 * 109.49184 * 56.82204 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0501 0.5657 1.0599 6 6 5.5191 0.5657 1.0600 7 6 6.1388 0.1181 2.3962 8 7 7.0994 1.2248 2.2037 9 6 8.3513 1.4741 2.6365 10 8 8.9146 2.4963 2.3067 11 6 9.0511 0.4829 3.5302 12 6 10.4480 1.0036 3.8741 13 6 11.1586 -0.0030 4.7809 14 6 12.5554 0.5180 5.1253 15 6 13.2556 -0.4738 6.0180 16 1 12.7547 -1.3850 6.3101 17 6 14.5361 -0.2186 6.4609 18 7 15.1474 -1.0844 7.2396 19 14 15.4032 1.3564 5.9539 20 1 15.1139 2.4222 6.9466 21 1 16.8679 1.1183 5.8959 22 1 14.9173 1.7805 4.6163 23 6 6.1389 1.9456 1.3459 24 6 3.5234 -0.8062 1.0599 25 6 1.9956 -0.7632 1.1401 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6938 1.8773 0.9174 30 1 1.6015 1.9132 -0.8600 31 1 3.9178 2.3448 -0.0511 32 1 3.8254 0.8479 -1.0105 33 1 5.9441 0.0656 0.1897 34 1 5.4792 0.2529 3.2534 35 1 6.5940 -0.8717 2.3596 36 1 8.4766 0.3517 4.4472 37 1 9.1363 -0.4739 3.0148 38 1 11.0226 1.1352 2.9572 39 1 10.3624 1.9603 4.3894 40 1 10.5841 -0.1349 5.6978 41 1 11.2442 -0.9594 4.2650 42 1 13.1301 0.6502 4.2085 43 1 12.4694 1.4743 5.6412 44 1 16.0481 -0.9047 7.5515 45 1 6.5942 2.4122 0.4723 46 1 5.4787 2.6191 1.8923 47 1 3.8253 -1.3116 0.1425 48 1 3.9177 -1.3471 1.9201 49 1 1.6937 -0.2821 2.0704 50 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339427235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:32 Heat of formation + Delta-G solvation = -0.352087 kcal Electronic energy + Delta-G solvation = -25093.392479 eV Core-core repulsion = 21542.353426 eV Total energy + Delta-G solvation = -3551.039053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79547 -39.38748 -37.92350 -35.09891 -34.93866 -32.56268 -31.50845 -30.65342 -29.54982 -27.69809 -26.76208 -25.50425 -24.14160 -23.85704 -22.10944 -20.96528 -20.30105 -20.00449 -19.04557 -17.33093 -17.00198 -16.54033 -15.98652 -15.85183 -15.58358 -15.35857 -15.19557 -15.11411 -14.73207 -14.15141 -14.02040 -13.34727 -13.18891 -13.01789 -12.99322 -12.94724 -12.61604 -12.44511 -12.30379 -12.16103 -12.01213 -11.78597 -11.71571 -11.58619 -11.22251 -11.09511 -10.98761 -10.70833 -10.51674 -9.93786 -9.78992 -9.62689 -9.40029 -9.10118 -9.04830 -8.87620 -8.80967 -8.47666 -5.99021 -3.96357 2.54886 2.66316 3.36573 3.36786 3.40820 3.43635 3.50064 3.79819 4.32425 4.34114 4.50153 4.51718 4.63158 4.66409 4.75714 4.84438 4.89351 4.98063 5.02741 5.04207 5.09051 5.18515 5.24169 5.26662 5.28735 5.31066 5.35822 5.36126 5.38298 5.42906 5.46814 5.59369 5.64039 5.84578 6.05385 6.18747 6.37245 6.37783 6.43561 6.55936 6.58731 6.70461 6.84070 7.01340 7.40165 7.53048 7.53888 7.86500 8.16110 8.60038 9.05970 9.64462 11.14466 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.040798 B = 0.001847 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.137453 B =15156.524296 C =15718.191821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.041 3.959 7 C 0.115 3.885 8 N -0.651 5.651 9 C 0.538 3.462 10 O -0.536 6.536 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.118 3.882 24 C 0.056 3.944 25 C 0.056 3.944 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.044 0.956 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.992 1.704 -16.523 36.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.072 4.072 5 N -0.254 5.254 6 C -0.068 4.068 7 C -0.008 4.008 8 N -0.389 5.389 9 C 0.329 3.671 10 O -0.411 6.411 11 C -0.171 4.171 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.005 4.005 24 C -0.072 4.072 25 C -0.072 4.072 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.062 0.938 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -32.281 2.272 -16.531 36.338 hybrid contribution 0.417 0.719 -0.116 0.840 sum -31.864 2.991 -16.647 36.074 Atomic orbital electron populations 1.22346 0.86978 1.02200 1.00785 1.62165 1.08019 1.14043 1.42994 1.22168 0.94388 0.89332 1.01259 1.22148 0.94318 0.98775 0.91977 1.62351 1.05912 1.14212 1.42956 1.23717 0.87135 0.97896 0.98038 1.23249 0.88730 0.91696 0.97165 1.49935 1.12966 1.24034 1.51963 1.20789 0.79155 0.87457 0.79684 1.90710 1.64763 1.28171 1.57497 1.21719 0.98270 0.98185 0.98929 1.21499 0.92350 0.99818 1.00792 1.21474 0.97597 0.97271 0.97634 1.19580 0.92522 0.96621 0.96579 1.21189 0.99512 1.06024 1.29011 0.91102 1.25041 0.97342 0.96582 0.94630 1.69923 1.13692 1.35878 1.35047 0.86774 0.78557 0.84088 0.79887 1.20322 1.21449 1.18905 1.23091 0.88564 0.94682 0.94170 1.22159 0.94328 0.89172 1.01574 1.22175 0.94414 0.98602 0.91994 0.91305 0.91281 0.95484 0.93802 0.90187 0.89943 0.93643 0.90236 0.88758 0.89779 0.89075 0.89131 0.91781 0.91790 0.92855 0.92833 0.96610 0.97037 0.92836 0.90288 0.89193 0.93628 0.89818 0.93789 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.60 60.07 0.58 0.69 16 2 N -0.55 -3.30 4.97 -242.76 -1.21 -4.51 16 3 C 0.06 0.32 5.62 -3.77 -0.02 0.30 16 4 C 0.06 0.33 5.52 -3.77 -0.02 0.30 16 5 N -0.53 -3.29 4.66 -228.39 -1.06 -4.36 16 6 C 0.04 0.28 3.34 -69.92 -0.23 0.05 16 7 C 0.11 0.84 7.75 -2.84 -0.02 0.82 16 8 N -0.65 -7.16 3.61 -178.34 -0.64 -7.80 16 9 C 0.54 7.89 8.06 -10.98 -0.09 7.80 16 10 O -0.54 -10.10 16.71 5.56 0.09 -10.01 16 11 C -0.13 -1.78 5.45 -27.89 -0.15 -1.93 16 12 C -0.11 -1.86 4.50 -26.74 -0.12 -1.98 16 13 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 15 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 19 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 23 C 0.12 1.04 7.78 -2.96 -0.02 1.01 16 24 C 0.06 0.31 5.54 -3.77 -0.02 0.29 16 25 C 0.06 0.31 5.62 -3.77 -0.02 0.29 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 28 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.43 7.49 -51.93 -0.39 0.04 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.39 7.62 -51.93 -0.40 -0.01 16 49 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -34.96 394.14 -11.19 -46.15 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -9.59 Total: -6.71 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.83 Total: -8.83 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -2.14 Total: -44.47 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.96 -11.19 -46.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339427235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.796 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds