Wall clock time and date at job start Tue Mar 31 2020 09:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46954 * 111.00171 * 2 1 4 4 C 1.53045 * 109.36438 * 183.18464 * 3 2 1 5 5 N 1.46958 * 109.36552 * 301.60107 * 4 3 2 6 6 C 1.46906 * 111.00081 * 183.18707 * 5 4 3 7 7 C 1.53944 * 113.74248 * 164.71839 * 6 5 4 8 8 N 1.47802 * 86.03824 * 222.08710 * 7 6 5 9 9 C 1.34780 * 134.45724 * 204.64737 * 8 7 6 10 10 O 1.21282 * 120.00412 * 179.86727 * 9 8 7 11 11 C 1.50700 * 120.00226 * 359.86262 * 9 8 7 12 12 C 1.52992 * 109.47634 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47307 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47310 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47166 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00550 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99659 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99798 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00146 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46599 * 90.00398 * 19 17 15 21 21 H 1.48502 * 109.46919 * 209.99994 * 19 17 15 22 22 H 1.48496 * 109.47357 * 330.00064 * 19 17 15 23 23 C 1.47582 * 91.05516 * 24.55102 * 8 7 6 24 24 C 1.46954 * 110.88178 * 59.31914 * 5 4 3 25 25 C 1.46958 * 110.99701 * 123.80039 * 2 1 3 26 26 H 1.09001 * 109.46324 * 60.00228 * 1 2 3 27 27 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47029 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.48514 * 63.21810 * 3 2 1 30 30 H 1.08994 * 109.51137 * 303.16715 * 3 2 1 31 31 H 1.09004 * 109.48757 * 181.63451 * 4 3 2 32 32 H 1.08996 * 109.48910 * 61.56935 * 4 3 2 33 33 H 1.08994 * 112.94649 * 296.31538 * 6 5 4 34 34 H 1.08999 * 113.76883 * 336.35461 * 7 6 5 35 35 H 1.09000 * 113.76742 * 107.74781 * 7 6 5 36 36 H 1.09005 * 109.47077 * 300.00864 * 11 9 8 37 37 H 1.09006 * 109.46537 * 60.00224 * 11 9 8 38 38 H 1.09000 * 109.47150 * 300.00712 * 12 11 9 39 39 H 1.08999 * 109.46951 * 59.99766 * 12 11 9 40 40 H 1.09005 * 109.47330 * 299.99876 * 13 12 11 41 41 H 1.08996 * 109.47031 * 60.00140 * 13 12 11 42 42 H 1.09005 * 109.46656 * 300.00085 * 14 13 12 43 43 H 1.08999 * 109.47117 * 59.99465 * 14 13 12 44 44 H 0.96996 * 119.99897 * 180.02562 * 18 17 15 45 45 H 1.09001 * 113.77141 * 221.15493 * 23 8 7 46 46 H 1.08999 * 113.86948 * 89.76448 * 23 8 7 47 47 H 1.09005 * 109.48514 * 60.64808 * 24 5 4 48 48 H 1.08998 * 109.49048 * 180.70699 * 24 5 4 49 49 H 1.08996 * 109.48921 * 296.78021 * 25 2 1 50 50 H 1.09001 * 109.49184 * 56.82204 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0501 0.5657 1.0599 6 6 5.5191 0.5657 1.0600 7 6 6.1388 0.1181 2.3962 8 7 7.0994 1.2248 2.2037 9 6 8.3513 1.4741 2.6365 10 8 8.9146 2.4963 2.3067 11 6 9.0511 0.4829 3.5302 12 6 10.4480 1.0036 3.8741 13 6 11.1586 -0.0030 4.7809 14 6 12.5554 0.5180 5.1253 15 6 13.2556 -0.4738 6.0180 16 1 12.7547 -1.3850 6.3101 17 6 14.5361 -0.2186 6.4609 18 7 15.1474 -1.0844 7.2396 19 14 15.4032 1.3564 5.9539 20 1 15.1139 2.4222 6.9466 21 1 16.8679 1.1183 5.8959 22 1 14.9173 1.7805 4.6163 23 6 6.1389 1.9456 1.3459 24 6 3.5234 -0.8062 1.0599 25 6 1.9956 -0.7632 1.1401 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6938 1.8773 0.9174 30 1 1.6015 1.9132 -0.8600 31 1 3.9178 2.3448 -0.0511 32 1 3.8254 0.8479 -1.0105 33 1 5.9441 0.0656 0.1897 34 1 5.4792 0.2529 3.2534 35 1 6.5940 -0.8717 2.3596 36 1 8.4766 0.3517 4.4472 37 1 9.1363 -0.4739 3.0148 38 1 11.0226 1.1352 2.9572 39 1 10.3624 1.9603 4.3894 40 1 10.5841 -0.1349 5.6978 41 1 11.2442 -0.9594 4.2650 42 1 13.1301 0.6502 4.2085 43 1 12.4694 1.4743 5.6412 44 1 16.0481 -0.9047 7.5515 45 1 6.5942 2.4122 0.4723 46 1 5.4787 2.6191 1.8923 47 1 3.8253 -1.3116 0.1425 48 1 3.9177 -1.3471 1.9201 49 1 1.6937 -0.2821 2.0704 50 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339427235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:32 Heat of formation + Delta-G solvation = -25.342990 kcal Electronic energy + Delta-G solvation = -25094.476166 eV Core-core repulsion = 21542.353426 eV Total energy + Delta-G solvation = -3552.122740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53819 -40.10127 -38.75654 -36.66027 -35.58614 -34.60423 -32.15199 -31.92868 -30.54932 -28.52584 -27.48703 -26.91853 -24.68438 -24.32198 -23.60035 -21.90094 -21.62149 -20.76217 -19.91060 -18.86300 -18.08911 -17.74090 -16.87713 -16.82457 -16.29449 -16.07338 -16.03230 -15.75543 -15.67267 -15.44676 -15.09061 -14.80529 -14.20978 -14.05154 -13.81251 -13.64353 -13.58369 -13.52514 -13.40444 -13.31640 -12.87477 -12.77587 -12.74508 -12.35026 -12.22199 -12.10206 -12.04224 -11.76198 -11.70405 -11.54935 -11.49399 -11.36250 -11.27055 -10.78919 -10.76144 -9.79528 -9.47127 -9.26670 -8.29935 -6.32950 1.34437 1.35897 1.48857 1.57367 1.74881 2.35687 2.85212 3.01149 3.05424 3.18828 3.47273 3.89573 3.96961 4.01189 4.10588 4.11215 4.17252 4.24172 4.38664 4.44603 4.46141 4.48821 4.56756 4.59634 4.61612 4.62742 4.65233 4.69835 4.73086 4.79597 4.86665 4.92529 4.93241 4.96052 5.03489 5.03986 5.11930 5.14400 5.20902 5.25887 5.58650 5.64549 5.68010 5.91493 5.93026 6.13180 6.14826 6.29227 6.63132 6.74773 7.10834 7.31876 8.86569 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.040798 B = 0.001847 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.137453 B =15156.524296 C =15718.191821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.059 3.941 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.057 3.943 7 C 0.117 3.883 8 N -0.652 5.652 9 C 0.534 3.466 10 O -0.590 6.590 11 C -0.123 4.123 12 C -0.097 4.097 13 C -0.093 4.093 14 C -0.017 4.017 15 C -0.531 4.531 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.253 1.253 23 C 0.113 3.887 24 C 0.057 3.943 25 C 0.057 3.943 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.266 0.734 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.624 1.865 -17.411 38.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.069 4.069 4 C -0.071 4.071 5 N -0.256 5.256 6 C -0.052 4.052 7 C -0.004 4.004 8 N -0.388 5.388 9 C 0.325 3.675 10 O -0.471 6.471 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.130 4.130 14 C -0.055 4.055 15 C -0.569 4.569 16 H 0.056 0.944 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.177 1.177 23 C -0.010 4.010 24 C -0.071 4.071 25 C -0.071 4.071 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.056 0.944 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -33.982 2.399 -17.429 38.266 hybrid contribution 0.811 0.582 0.163 1.012 sum -33.171 2.982 -17.266 37.514 Atomic orbital electron populations 1.22366 0.86237 1.02662 1.00955 1.62203 1.08838 1.14182 1.43276 1.22153 0.94170 0.89334 1.01258 1.22155 0.94548 0.98872 0.91554 1.62354 1.05335 1.14791 1.43150 1.23490 0.87560 0.96188 0.97951 1.23500 0.87773 0.91476 0.97695 1.49994 1.12416 1.25395 1.50983 1.20870 0.80182 0.86823 0.79585 1.90684 1.66413 1.30259 1.59713 1.21603 0.95943 0.98575 1.00079 1.21289 0.94477 0.98491 0.99287 1.21333 0.95181 0.97982 0.98551 1.19578 0.94929 0.95573 0.95379 1.21543 0.99921 1.05871 1.29594 0.94386 1.25977 0.98299 1.00270 0.94628 1.70059 1.14362 1.38126 1.36493 0.85705 0.77487 0.79652 0.80108 1.19240 1.20627 1.17712 1.23245 0.88149 0.95899 0.93704 1.22199 0.94403 0.88655 1.01849 1.22188 0.94374 0.98980 0.91539 0.90853 0.90697 0.95588 0.94473 0.89438 0.89567 0.94213 0.90077 0.87592 0.87830 0.86949 0.86826 0.93026 0.93041 0.92383 0.92340 0.96803 0.96922 0.92507 0.90956 0.88719 0.94143 0.88593 0.94411 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 127.69 1.23 1.43 16 2 N -0.56 -5.90 4.97 -921.97 -4.58 -10.48 16 3 C 0.06 0.58 5.62 86.31 0.49 1.07 16 4 C 0.06 0.58 5.52 86.31 0.48 1.05 16 5 N -0.53 -5.53 4.66 -876.49 -4.08 -9.61 16 6 C 0.06 0.65 3.34 46.67 0.16 0.81 16 7 C 0.12 1.36 7.75 86.44 0.67 2.03 16 8 N -0.65 -13.09 3.61 -836.53 -3.02 -16.11 16 9 C 0.53 14.95 8.06 87.66 0.71 15.66 16 10 O -0.59 -22.27 16.71 -3.04 -0.05 -22.32 16 11 C -0.12 -3.05 5.45 29.85 0.16 -2.89 16 12 C -0.10 -3.29 4.50 30.59 0.14 -3.15 16 13 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 14 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 15 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 16 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 17 C 0.00 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 19 Si 0.95 46.38 27.47 68.60 1.88 48.27 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.25 -11.86 6.54 99.48 0.65 -11.20 16 23 C 0.11 1.82 7.78 86.49 0.67 2.50 16 24 C 0.06 0.50 5.54 86.31 0.48 0.98 16 25 C 0.06 0.52 5.62 86.31 0.49 1.01 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.48 8.13 -2.39 -0.02 0.46 16 28 H 0.03 0.20 8.14 -2.39 -0.02 0.19 16 29 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.80 7.49 -2.38 -0.02 0.78 16 32 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 43 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 44 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 48 H 0.10 0.61 7.62 -2.39 -0.02 0.59 16 49 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.09 0.65 8.13 -2.39 -0.02 0.63 16 Total: -1.00 -76.24 394.14 -2.09 -78.33 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.81 Total: 6.66 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 6.64 Total: -14.31 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -11.38 Total: -96.63 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -76.24 -2.09 -78.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339427235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.987 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds