Wall clock time and date at job start Tue Mar 31 2020 09:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00504 * 2 1 4 4 C 1.53040 * 109.52788 * 185.84107 * 3 2 1 5 5 C 1.53124 * 109.27409 * 300.81809 * 4 3 2 6 6 C 1.52999 * 109.52057 * 177.56149 * 5 4 3 7 7 C 1.50703 * 109.47115 * 175.00226 * 6 5 4 8 8 O 1.21280 * 119.99652 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.64513 * 359.97064 * 9 7 6 11 11 C 1.54324 * 107.26681 * 178.96478 * 10 9 7 12 12 C 1.55159 * 102.94333 * 337.80338 * 11 10 9 13 13 H 1.08996 * 111.00708 * 277.39464 * 12 11 10 14 14 C 1.53004 * 111.00328 * 153.57938 * 12 11 10 15 15 N 1.46499 * 109.47198 * 66.45684 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31612 * 120.00054 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47517 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.46736 * 209.99481 * 20 18 16 23 23 H 1.48496 * 109.47375 * 329.99177 * 20 18 16 24 24 C 1.47419 * 125.64853 * 179.97438 * 9 7 6 25 25 C 1.53116 * 109.15809 * 57.65568 * 5 4 3 26 26 C 1.46854 * 111.00077 * 124.20968 * 2 1 3 27 27 H 1.09010 * 109.46879 * 60.00092 * 1 2 3 28 28 H 1.09002 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47149 * 300.00366 * 1 2 3 30 30 H 1.08995 * 109.46023 * 65.81709 * 3 2 1 31 31 H 1.09009 * 109.45123 * 305.84928 * 3 2 1 32 32 H 1.08998 * 109.50363 * 180.87689 * 4 3 2 33 33 H 1.09000 * 109.53670 * 60.77823 * 4 3 2 34 34 H 1.09002 * 109.52069 * 297.68275 * 5 4 3 35 35 H 1.08999 * 109.47035 * 54.99794 * 6 5 4 36 36 H 1.09005 * 109.46904 * 294.99812 * 6 5 4 37 37 H 1.09003 * 109.88406 * 59.54756 * 10 9 7 38 38 H 1.08996 * 109.88468 * 298.37843 * 10 9 7 39 39 H 1.09004 * 110.71897 * 219.44651 * 11 10 9 40 40 H 1.08996 * 110.87654 * 96.24368 * 11 10 9 41 41 H 1.09009 * 109.46730 * 306.45471 * 14 12 11 42 42 H 1.08998 * 109.46846 * 186.46016 * 14 12 11 43 43 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 44 44 H 0.96998 * 120.00381 * 180.02562 * 19 18 16 45 45 H 1.09005 * 110.36514 * 85.26648 * 24 9 7 46 46 H 1.08998 * 110.36722 * 322.94846 * 24 9 7 47 47 H 1.08997 * 109.50852 * 62.28800 * 25 5 4 48 48 H 1.09004 * 109.49712 * 182.40262 * 25 5 4 49 49 H 1.08999 * 109.45515 * 294.17635 * 26 2 1 50 50 H 1.09002 * 109.45896 * 54.14245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 5.6361 0.4449 0.8406 7 6 6.2395 -0.2324 2.0441 8 8 5.5261 -0.6044 2.9516 9 7 7.5717 -0.4248 2.1118 10 6 8.5481 -0.0260 1.0875 11 6 9.9457 -0.4234 1.6075 12 6 9.7335 -0.5114 3.1420 13 1 9.7982 0.4744 3.6025 14 6 10.7337 -1.4779 3.7795 15 7 12.0876 -0.9326 3.6542 16 6 13.1558 -1.6311 4.1505 17 1 12.9995 -2.5820 4.6382 18 6 14.4392 -1.1171 4.0266 19 7 15.4658 -1.7883 4.5041 20 14 14.7092 0.5277 3.1835 21 1 14.6376 1.6175 4.1897 22 1 16.0458 0.5387 2.5363 23 1 13.6592 0.7346 2.1541 24 6 8.2912 -1.0699 3.2251 25 6 3.5181 -0.8715 1.0208 26 6 1.9953 -0.7708 1.1338 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7325 1.8608 0.9375 31 1 1.5635 1.9256 -0.8332 32 1 3.9100 2.3511 -0.1311 33 1 3.7820 0.8571 -1.0907 34 1 3.8897 1.0361 1.9559 35 1 6.0519 1.4475 0.7414 36 1 5.8649 -0.1336 -0.0546 37 1 8.5031 1.0520 0.9321 38 1 8.3386 -0.5464 0.1530 39 1 10.6806 0.3437 1.3633 40 1 10.2500 -1.3892 1.2043 41 1 10.6816 -2.4414 3.2723 42 1 10.4908 -1.6089 4.8340 43 1 12.2279 -0.0788 3.2157 44 1 16.3626 -1.4290 4.4179 45 1 8.2957 -2.1524 3.0972 46 1 7.8347 -0.8016 4.1779 47 1 3.7813 -1.3837 0.0954 48 1 3.9099 -1.4302 1.8708 49 1 1.7324 -0.2708 2.0660 50 1 1.5634 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752955560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:06 Heat of formation + Delta-G solvation = -29.535688 kcal Electronic energy + Delta-G solvation = -25785.032388 eV Core-core repulsion = 22232.727839 eV Total energy + Delta-G solvation = -3552.304549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41963 -39.19510 -37.72018 -34.89650 -34.68227 -32.33269 -31.11901 -30.74799 -29.72734 -29.08212 -26.30889 -25.04984 -23.46737 -23.18190 -22.28961 -21.84245 -20.22588 -19.98058 -19.12232 -17.66286 -17.11931 -16.38257 -15.97417 -15.75104 -15.40328 -15.01878 -14.81422 -14.55701 -14.25428 -13.82972 -13.67871 -13.53840 -13.42157 -13.09844 -12.82574 -12.72009 -12.64260 -12.47656 -12.41538 -12.04135 -11.82415 -11.77359 -11.61976 -11.43651 -10.99004 -10.95018 -10.77855 -10.70059 -10.64211 -10.57381 -10.50628 -10.15913 -9.73146 -9.61528 -8.93154 -8.68328 -8.67809 -7.26722 -5.79254 -3.15253 2.56384 2.90503 3.33033 3.36336 3.42437 3.60618 4.25931 4.40776 4.50003 4.55818 4.57781 4.62618 4.75725 4.86020 4.92345 4.95841 5.04211 5.13300 5.16622 5.20509 5.22932 5.26254 5.36079 5.36148 5.48526 5.49065 5.50458 5.52882 5.58288 5.63347 5.73559 5.73878 5.79659 5.82549 5.86625 5.92535 6.09054 6.10346 6.16320 6.19767 6.31814 6.60181 6.70197 6.72106 6.75781 7.46689 7.96631 8.10228 8.39481 9.18262 9.90298 10.09958 11.39115 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.042913 B = 0.002173 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.333006 B =12883.384753 C =13312.023020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.072 4.072 6 C -0.131 4.131 7 C 0.527 3.473 8 O -0.542 6.542 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.110 4.110 13 H 0.083 0.917 14 C 0.168 3.832 15 N -0.754 5.754 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.113 3.887 25 C -0.116 4.116 26 C 0.057 3.943 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.033 0.967 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.786 6.965 -12.313 31.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.091 4.091 6 C -0.171 4.171 7 C 0.316 3.684 8 O -0.419 6.419 9 N -0.353 5.353 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.130 4.130 13 H 0.101 0.899 14 C 0.041 3.959 15 N -0.400 5.400 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.009 4.009 25 C -0.154 4.154 26 C -0.070 4.070 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.193 0.807 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.965 6.365 -12.152 31.149 hybrid contribution 0.216 1.618 0.088 1.635 sum -27.749 7.983 -12.064 31.293 Atomic orbital electron populations 1.22348 0.87485 1.02054 1.00481 1.61963 1.07400 1.13772 1.43853 1.22067 0.95557 0.89168 1.00355 1.21663 0.94278 1.00053 0.99061 1.20958 0.92166 0.97075 0.98935 1.21714 0.96572 1.01877 0.96935 1.20352 0.80304 0.79175 0.88566 1.90665 1.59388 1.51744 1.40147 1.48603 1.05788 1.59407 1.21469 1.22117 0.89082 0.99787 0.91340 1.22678 0.94594 1.03379 0.95606 1.22616 0.93744 1.00879 0.95751 0.89854 1.20525 0.83793 0.94053 0.97541 1.42649 1.02232 1.23622 1.71476 1.19059 0.84789 1.03167 1.30449 0.89182 1.24679 0.95422 0.98248 1.00834 1.69697 0.98416 1.38932 1.51088 0.86536 0.77096 0.85195 0.79587 1.21113 1.21735 1.20370 1.22219 0.91080 0.97380 0.90251 1.21767 0.93710 0.96703 1.03210 1.22095 0.95998 0.97906 0.91040 0.91456 0.91391 0.95812 0.94950 0.90819 0.91420 0.90891 0.90679 0.89026 0.88872 0.91536 0.91398 0.89966 0.89858 0.95144 0.95107 0.80674 0.93037 0.91057 0.90378 0.91686 0.89413 0.94885 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.59 60.06 0.58 0.74 16 2 N -0.55 -4.60 4.91 -242.95 -1.19 -5.79 16 3 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 4 C -0.11 -0.81 5.38 -26.65 -0.14 -0.95 16 5 C -0.07 -0.64 1.90 -90.50 -0.17 -0.82 16 6 C -0.13 -1.13 4.37 -27.88 -0.12 -1.25 16 7 C 0.53 6.48 7.58 -10.99 -0.08 6.39 16 8 O -0.54 -8.39 14.25 5.56 0.08 -8.31 16 9 N -0.62 -7.45 3.33 -170.53 -0.57 -8.02 16 10 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 11 C -0.12 -1.55 6.13 -24.90 -0.15 -1.71 16 12 C -0.11 -1.57 3.10 -88.48 -0.27 -1.85 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.17 3.08 5.71 -4.04 -0.02 3.06 16 15 N -0.75 -17.26 5.26 -59.90 -0.31 -17.58 16 16 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 20 Si 0.89 21.63 27.74 -169.99 -4.71 16.91 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 24 C 0.11 1.51 6.37 -2.54 -0.02 1.49 16 25 C -0.12 -1.13 5.09 -26.65 -0.14 -1.27 16 26 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 27 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.47 8.12 -51.92 -0.42 0.05 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 41 H 0.03 0.57 8.11 -51.92 -0.42 0.14 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 7.97 5.40 -40.82 -0.22 7.75 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.07 0.94 8.04 -51.93 -0.42 0.53 16 46 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.05 6.04 -51.93 -0.31 0.73 16 49 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -32.55 385.03 -10.39 -42.93 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -9.39 Total: 3.61 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.86 Total: -1.25 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -1.30 Total: -59.70 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -10.39 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752955560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.398 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds