Wall clock time and date at job start Tue Mar 31 2020 09:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00504 * 2 1 4 4 C 1.53040 * 109.52788 * 185.84107 * 3 2 1 5 5 C 1.53124 * 109.27409 * 300.81809 * 4 3 2 6 6 C 1.52999 * 109.52057 * 177.56149 * 5 4 3 7 7 C 1.50703 * 109.47115 * 175.00226 * 6 5 4 8 8 O 1.21280 * 119.99652 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.64513 * 359.97064 * 9 7 6 11 11 C 1.54324 * 107.26681 * 178.96478 * 10 9 7 12 12 C 1.55159 * 102.94333 * 337.80338 * 11 10 9 13 13 H 1.08996 * 111.00708 * 277.39464 * 12 11 10 14 14 C 1.53004 * 111.00328 * 153.57938 * 12 11 10 15 15 N 1.46499 * 109.47198 * 66.45684 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31612 * 120.00054 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47517 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.46736 * 209.99481 * 20 18 16 23 23 H 1.48496 * 109.47375 * 329.99177 * 20 18 16 24 24 C 1.47419 * 125.64853 * 179.97438 * 9 7 6 25 25 C 1.53116 * 109.15809 * 57.65568 * 5 4 3 26 26 C 1.46854 * 111.00077 * 124.20968 * 2 1 3 27 27 H 1.09010 * 109.46879 * 60.00092 * 1 2 3 28 28 H 1.09002 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47149 * 300.00366 * 1 2 3 30 30 H 1.08995 * 109.46023 * 65.81709 * 3 2 1 31 31 H 1.09009 * 109.45123 * 305.84928 * 3 2 1 32 32 H 1.08998 * 109.50363 * 180.87689 * 4 3 2 33 33 H 1.09000 * 109.53670 * 60.77823 * 4 3 2 34 34 H 1.09002 * 109.52069 * 297.68275 * 5 4 3 35 35 H 1.08999 * 109.47035 * 54.99794 * 6 5 4 36 36 H 1.09005 * 109.46904 * 294.99812 * 6 5 4 37 37 H 1.09003 * 109.88406 * 59.54756 * 10 9 7 38 38 H 1.08996 * 109.88468 * 298.37843 * 10 9 7 39 39 H 1.09004 * 110.71897 * 219.44651 * 11 10 9 40 40 H 1.08996 * 110.87654 * 96.24368 * 11 10 9 41 41 H 1.09009 * 109.46730 * 306.45471 * 14 12 11 42 42 H 1.08998 * 109.46846 * 186.46016 * 14 12 11 43 43 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 44 44 H 0.96998 * 120.00381 * 180.02562 * 19 18 16 45 45 H 1.09005 * 110.36514 * 85.26648 * 24 9 7 46 46 H 1.08998 * 110.36722 * 322.94846 * 24 9 7 47 47 H 1.08997 * 109.50852 * 62.28800 * 25 5 4 48 48 H 1.09004 * 109.49712 * 182.40262 * 25 5 4 49 49 H 1.08999 * 109.45515 * 294.17635 * 26 2 1 50 50 H 1.09002 * 109.45896 * 54.14245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 5.6361 0.4449 0.8406 7 6 6.2395 -0.2324 2.0441 8 8 5.5261 -0.6044 2.9516 9 7 7.5717 -0.4248 2.1118 10 6 8.5481 -0.0260 1.0875 11 6 9.9457 -0.4234 1.6075 12 6 9.7335 -0.5114 3.1420 13 1 9.7982 0.4744 3.6025 14 6 10.7337 -1.4779 3.7795 15 7 12.0876 -0.9326 3.6542 16 6 13.1558 -1.6311 4.1505 17 1 12.9995 -2.5820 4.6382 18 6 14.4392 -1.1171 4.0266 19 7 15.4658 -1.7883 4.5041 20 14 14.7092 0.5277 3.1835 21 1 14.6376 1.6175 4.1897 22 1 16.0458 0.5387 2.5363 23 1 13.6592 0.7346 2.1541 24 6 8.2912 -1.0699 3.2251 25 6 3.5181 -0.8715 1.0208 26 6 1.9953 -0.7708 1.1338 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7325 1.8608 0.9375 31 1 1.5635 1.9256 -0.8332 32 1 3.9100 2.3511 -0.1311 33 1 3.7820 0.8571 -1.0907 34 1 3.8897 1.0361 1.9559 35 1 6.0519 1.4475 0.7414 36 1 5.8649 -0.1336 -0.0546 37 1 8.5031 1.0520 0.9321 38 1 8.3386 -0.5464 0.1530 39 1 10.6806 0.3437 1.3633 40 1 10.2500 -1.3892 1.2043 41 1 10.6816 -2.4414 3.2723 42 1 10.4908 -1.6089 4.8340 43 1 12.2279 -0.0788 3.2157 44 1 16.3626 -1.4290 4.4179 45 1 8.2957 -2.1524 3.0972 46 1 7.8347 -0.8016 4.1779 47 1 3.7813 -1.3837 0.0954 48 1 3.9099 -1.4302 1.8708 49 1 1.7324 -0.2708 2.0660 50 1 1.5634 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752955560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:05 Heat of formation + Delta-G solvation = -51.355159 kcal Electronic energy + Delta-G solvation = -25785.978551 eV Core-core repulsion = 22232.727839 eV Total energy + Delta-G solvation = -3553.250712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32269 -39.95340 -38.75891 -36.57275 -35.37863 -34.02137 -32.34504 -31.75593 -30.55096 -30.10283 -27.47633 -26.12212 -24.26879 -24.07512 -23.81918 -22.75225 -21.48172 -20.65479 -20.02860 -19.63219 -18.05840 -17.41560 -16.73487 -16.63708 -16.46643 -16.04152 -15.92392 -15.48714 -15.39605 -15.10203 -14.90382 -14.76127 -14.34297 -14.17886 -13.92789 -13.90303 -13.55685 -13.31736 -13.28013 -13.08680 -12.98260 -12.80211 -12.69875 -12.38897 -12.13464 -12.09425 -12.04378 -11.83910 -11.75844 -11.61349 -11.59647 -11.48994 -11.21400 -10.96700 -10.66355 -9.63602 -9.30942 -9.29765 -8.01592 -5.36065 1.38824 1.44347 1.51627 1.65520 1.99275 2.50320 3.01271 3.27980 3.32588 3.61812 3.64015 3.75346 3.82245 3.87726 4.02496 4.14269 4.23871 4.30801 4.34440 4.37012 4.42562 4.49248 4.52065 4.61037 4.62874 4.64610 4.66778 4.76723 4.81088 4.84094 4.89163 4.92435 4.96208 5.00059 5.02827 5.07665 5.11955 5.19397 5.20922 5.27876 5.34539 5.40256 5.51310 5.76078 6.10550 6.15265 6.21554 6.56384 7.08775 7.18116 7.83289 8.04692 9.19885 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.042913 B = 0.002173 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.333006 B =12883.384753 C =13312.023020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.553 5.553 3 C 0.053 3.947 4 C -0.105 4.105 5 C -0.070 4.070 6 C -0.122 4.122 7 C 0.520 3.480 8 O -0.582 6.582 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.124 4.124 12 C -0.100 4.100 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.959 3.041 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.241 1.241 24 C 0.118 3.882 25 C -0.112 4.112 26 C 0.060 3.940 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.021 0.979 43 H 0.369 0.631 44 H 0.258 0.742 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.020 0.980 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.154 9.521 -15.344 34.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.278 5.278 3 C -0.075 4.075 4 C -0.143 4.143 5 C -0.089 4.089 6 C -0.161 4.161 7 C 0.311 3.689 8 O -0.463 6.463 9 N -0.354 5.354 10 C -0.018 4.018 11 C -0.162 4.162 12 C -0.120 4.120 13 H 0.104 0.896 14 C 0.040 3.960 15 N -0.399 5.399 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.165 1.165 24 C -0.006 4.006 25 C -0.150 4.150 26 C -0.068 4.068 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.202 0.798 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.038 0.962 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.386 8.933 -15.216 34.276 hybrid contribution 0.578 0.691 1.127 1.442 sum -28.808 9.623 -14.090 33.482 Atomic orbital electron populations 1.22403 0.86560 1.02490 1.01004 1.62003 1.08373 1.14302 1.43082 1.22160 0.96059 0.88710 1.00585 1.21631 0.93794 1.00719 0.98171 1.20913 0.92737 0.96394 0.98850 1.21748 0.95800 1.02999 0.95553 1.21086 0.79982 0.78635 0.89154 1.90659 1.60288 1.53418 1.41927 1.48688 1.06166 1.59116 1.21394 1.22239 0.86658 1.01639 0.91223 1.22675 0.96518 1.03321 0.93670 1.22399 0.92825 0.99566 0.97182 0.89576 1.20623 0.82819 0.95113 0.97468 1.42575 1.02627 1.23590 1.71090 1.19022 0.86464 1.02058 1.29334 0.92937 1.25586 0.94982 1.02898 1.02331 1.69898 0.98925 1.41408 1.53331 0.85357 0.77527 0.79479 0.79124 1.20677 1.22366 1.16494 1.22022 0.90641 0.97301 0.90644 1.21674 0.94101 0.97210 1.02038 1.22026 0.95773 0.98086 0.90948 0.90186 0.91089 0.95966 0.95717 0.89322 0.89622 0.90251 0.92823 0.86537 0.86796 0.88989 0.88989 0.89436 0.90623 0.95367 0.96059 0.79775 0.93342 0.91475 0.91596 0.91345 0.92125 0.96178 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.59 127.69 1.22 1.51 16 2 N -0.55 -8.50 4.91 -922.56 -4.53 -13.03 16 3 C 0.05 0.68 5.46 86.33 0.47 1.15 16 4 C -0.11 -1.20 5.38 30.65 0.16 -1.03 16 5 C -0.07 -1.12 1.90 -10.71 -0.02 -1.14 16 6 C -0.12 -1.71 4.37 29.85 0.13 -1.58 16 7 C 0.52 11.91 7.58 87.66 0.66 12.57 16 8 O -0.58 -18.12 14.25 -3.03 -0.04 -18.17 16 9 N -0.62 -13.50 3.33 -811.84 -2.70 -16.20 16 10 C 0.10 1.65 6.49 86.73 0.56 2.22 16 11 C -0.12 -2.70 6.13 31.78 0.19 -2.50 16 12 C -0.10 -2.69 3.10 -9.41 -0.03 -2.72 16 13 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 14 C 0.17 6.04 5.71 86.38 0.49 6.54 16 15 N -0.75 -33.81 5.26 -343.44 -1.81 -35.62 16 16 C -0.24 -13.47 10.47 84.03 0.88 -12.59 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 19 N -0.99 -63.00 13.97 21.65 0.30 -62.69 16 20 Si 0.96 43.96 27.74 68.60 1.90 45.87 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.24 -9.50 6.52 99.48 0.65 -8.85 16 24 C 0.12 3.02 6.37 86.85 0.55 3.57 16 25 C -0.11 -2.13 5.09 30.64 0.16 -1.97 16 26 C 0.06 1.06 5.46 86.32 0.47 1.53 16 27 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.89 8.12 -2.38 -0.02 0.87 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16 35 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 1.78 8.01 -2.39 -0.02 1.76 16 41 H 0.03 1.05 8.11 -2.38 -0.02 1.03 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.37 15.34 5.40 -92.71 -0.50 14.84 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.07 1.77 8.04 -2.38 -0.02 1.75 16 46 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.49 6.04 -2.38 -0.01 1.47 16 49 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 Total: -1.00 -72.99 385.03 -0.16 -73.15 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.33 Total: 24.57 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.39 Total: 2.13 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -8.73 Total: -127.54 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.04 Total: -18.17 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.87 kcal Total: -72.99 -0.16 -73.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752955560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.793 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds