Wall clock time and date at job start Tue Mar 31 2020 09:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86811 * 119.99522 * 2 1 4 4 H 1.48499 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46879 * 299.99527 * 3 2 1 6 6 H 1.48498 * 109.47283 * 60.00017 * 3 2 1 7 7 C 1.39916 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00405 * 197.92720 * 7 2 1 9 9 C 1.41423 * 119.99893 * 17.92133 * 7 2 1 10 10 C 1.40750 * 120.17301 * 24.50512 * 9 7 2 11 11 C 1.37906 * 119.97027 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.83390 * 179.97438 * 11 10 9 13 13 C 1.38665 * 120.32624 * 359.71792 * 11 10 9 14 14 C 1.39661 * 120.34858 * 0.55908 * 13 11 10 15 15 C 1.48385 * 119.98635 * 179.72129 * 14 13 11 16 16 C 1.39431 * 120.10957 * 294.72472 * 15 14 13 17 17 F 1.35103 * 120.10683 * 0.02562 * 16 15 14 18 18 C 1.38711 * 119.79110 * 180.30222 * 16 15 14 19 19 O 1.35987 * 119.98645 * 179.70038 * 18 16 15 20 20 C 1.38719 * 120.02144 * 359.46303 * 18 16 15 21 21 C 1.38265 * 120.22454 * 0.51628 * 20 18 16 22 22 C 1.38153 * 120.20863 * 359.76609 * 21 20 18 23 23 Cl 1.73599 * 120.01347 * 179.97438 * 22 21 20 24 24 C 1.38786 * 120.02763 * 359.44547 * 14 13 11 25 25 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.01766 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.82381 * 180.27403 * 13 11 10 28 28 H 0.96702 * 113.99582 * 89.99945 * 19 18 16 29 29 H 1.07997 * 119.88493 * 180.25783 * 20 18 16 30 30 H 1.07993 * 119.89802 * 179.74107 * 21 20 18 31 31 H 1.07999 * 120.16669 * 180.29594 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3966 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0486 -1.2342 0.2884 9 6 1.3524 -2.4069 -0.3758 10 6 0.2233 -2.3604 -1.2149 11 6 -0.4131 -3.5285 -1.5788 12 9 -1.4969 -3.4807 -2.3839 13 6 0.0571 -4.7522 -1.1268 14 6 1.1729 -4.8136 -0.2890 15 6 1.6655 -6.1269 0.1950 16 6 0.8756 -6.9004 1.0446 17 9 -0.3411 -6.4567 1.4295 18 6 1.3452 -8.1243 1.4981 19 8 0.5807 -8.8791 2.3317 20 6 2.5925 -8.5807 1.0975 21 6 3.3762 -7.8146 0.2546 22 6 2.9202 -6.5915 -0.1980 23 17 3.9088 -5.6335 -1.2557 24 6 1.8245 -3.6471 0.0864 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1450 -1.4105 -1.5729 27 1 -0.4449 -5.6623 -1.4205 28 1 -0.0070 -9.4965 1.8752 29 1 2.9542 -9.5358 1.4486 30 1 4.3481 -8.1731 -0.0505 31 1 2.6904 -3.6924 0.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244542607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:08 Heat of formation + Delta-G solvation = -103.408834 kcal Electronic energy + Delta-G solvation = -22338.767321 eV Core-core repulsion = 18439.537250 eV Total energy + Delta-G solvation = -3899.230071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 310.031 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.62256 -47.69405 -39.61477 -37.80300 -36.82110 -35.84485 -33.93670 -31.62464 -29.72470 -29.51970 -28.07653 -25.54524 -23.39263 -22.62364 -20.87887 -20.71356 -18.60026 -17.50864 -17.34226 -16.72088 -16.00627 -15.70223 -15.17590 -14.91032 -14.86538 -14.71167 -14.47881 -14.35023 -13.59141 -13.52790 -13.03331 -12.89115 -12.69181 -12.13609 -12.04822 -11.70174 -11.24344 -11.12695 -11.04768 -10.84425 -10.79205 -10.64476 -10.45156 -10.07800 -9.78201 -9.29444 -8.77252 -8.49068 -7.62887 -7.39871 -6.90341 -4.55465 0.88037 1.02146 2.26787 2.52399 2.60821 3.01373 3.04377 3.07673 3.33642 3.83032 3.89663 4.32462 4.37953 4.69435 4.91987 5.05473 5.38668 5.44380 5.70896 5.80976 5.90465 5.99685 6.10591 6.22055 6.44874 6.57439 6.79899 6.87241 7.06621 7.31951 7.43693 7.55061 7.60396 7.79269 8.05611 8.41601 8.68031 8.70391 10.03080 Molecular weight = 310.03amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.004711 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.191173 B = 5942.095823 C = 6514.040558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.191 4.191 11 C 0.107 3.893 12 F -0.165 7.165 13 C -0.249 4.249 14 C -0.023 4.023 15 C -0.028 4.028 16 C 0.096 3.904 17 F -0.117 7.117 18 C 0.071 3.929 19 O -0.486 6.486 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.011 4.011 23 Cl -0.041 7.041 24 C -0.189 4.189 25 H 0.284 0.716 26 H 0.131 0.869 27 H 0.099 0.901 28 H 0.390 0.610 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -12.583 0.279 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.211 4.211 11 C 0.088 3.912 12 F -0.144 7.144 13 C -0.269 4.269 14 C -0.023 4.023 15 C -0.030 4.030 16 C 0.076 3.924 17 F -0.095 7.095 18 C 0.025 3.975 19 O -0.296 6.296 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.038 4.038 23 Cl -0.011 7.011 24 C -0.209 4.209 25 H 0.095 0.905 26 H 0.149 0.851 27 H 0.117 0.883 28 H 0.246 0.754 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.914 -11.993 0.633 12.976 hybrid contribution -0.398 0.616 -0.406 0.839 sum 4.516 -11.377 0.227 12.242 Atomic orbital electron populations 1.69816 1.07727 1.29685 1.33666 1.25973 0.94752 1.01657 0.92020 0.86217 0.81027 0.80583 0.78739 1.18175 1.19526 1.19812 1.19617 0.98369 0.90828 1.39352 0.89713 1.17246 0.90185 0.92031 0.88057 1.21379 1.00657 0.96050 1.02985 1.17463 0.85396 0.94827 0.93537 1.91342 1.53575 1.97531 1.71963 1.20074 1.01982 0.95250 1.09562 1.17666 0.96397 0.89351 0.98885 1.18882 0.92299 0.95499 0.96300 1.18002 0.82623 0.93948 0.97874 1.91546 1.39906 1.89077 1.88987 1.18370 0.92695 0.90988 0.95416 1.84893 1.56672 1.54906 1.33125 1.21144 0.93545 1.00963 0.97951 1.20882 1.00817 0.92822 0.98278 1.20831 0.92378 0.93464 0.97161 1.98398 1.67983 1.71206 1.63542 1.20974 1.03006 0.91196 1.05679 0.90484 0.85132 0.88276 0.75371 0.83836 0.83995 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.85 10.96 55.55 0.61 -19.25 16 2 C 0.08 1.83 5.13 -17.35 -0.09 1.74 16 3 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.45 -11.50 9.05 -37.74 -0.34 -11.84 16 8 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 9 C 0.13 3.28 5.57 -106.87 -0.60 2.69 16 10 C -0.19 -4.96 8.67 -38.75 -0.34 -5.29 16 11 C 0.11 2.63 7.28 -39.55 -0.29 2.34 16 12 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 13 C -0.25 -5.68 9.55 -38.89 -0.37 -6.05 16 14 C -0.02 -0.49 4.35 -104.99 -0.46 -0.95 16 15 C -0.03 -0.51 5.31 -104.82 -0.56 -1.07 16 16 C 0.10 1.65 7.25 -38.96 -0.28 1.37 16 17 F -0.12 -2.25 16.52 2.25 0.04 -2.22 16 18 C 0.07 0.97 6.70 -39.23 -0.26 0.71 16 19 O -0.49 -5.82 13.37 -19.70 -0.26 -6.08 16 20 C -0.12 -1.31 9.97 -39.39 -0.39 -1.71 16 21 C -0.11 -1.31 9.81 -39.60 -0.39 -1.69 16 22 C -0.01 -0.18 6.32 -39.16 -0.25 -0.42 16 23 Cl -0.04 -0.65 27.29 -51.86 -1.42 -2.06 16 24 C -0.19 -4.44 8.55 -38.52 -0.33 -4.77 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.13 3.52 6.15 -52.49 -0.32 3.20 16 27 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 28 H 0.39 2.67 9.06 45.56 0.41 3.08 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -28.58 303.46 -7.54 -36.12 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -1.15 Total: 4.76 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.94 Total: -24.96 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.26 Total: -6.08 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.08 Total: -6.11 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.58 -7.54 -36.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244542607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.291 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds