Wall clock time and date at job start Tue Mar 31 2020 09:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86811 * 119.99522 * 2 1 4 4 H 1.48499 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46879 * 299.99527 * 3 2 1 6 6 H 1.48498 * 109.47283 * 60.00017 * 3 2 1 7 7 C 1.39916 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00405 * 197.92720 * 7 2 1 9 9 C 1.41423 * 119.99893 * 17.92133 * 7 2 1 10 10 C 1.40750 * 120.17301 * 24.50512 * 9 7 2 11 11 C 1.37906 * 119.97027 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.83390 * 179.97438 * 11 10 9 13 13 C 1.38665 * 120.32624 * 359.71792 * 11 10 9 14 14 C 1.39661 * 120.34858 * 0.55908 * 13 11 10 15 15 C 1.48385 * 119.98635 * 179.72129 * 14 13 11 16 16 C 1.39431 * 120.10957 * 294.72472 * 15 14 13 17 17 F 1.35103 * 120.10683 * 0.02562 * 16 15 14 18 18 C 1.38711 * 119.79110 * 180.30222 * 16 15 14 19 19 O 1.35987 * 119.98645 * 179.70038 * 18 16 15 20 20 C 1.38719 * 120.02144 * 359.46303 * 18 16 15 21 21 C 1.38265 * 120.22454 * 0.51628 * 20 18 16 22 22 C 1.38153 * 120.20863 * 359.76609 * 21 20 18 23 23 Cl 1.73599 * 120.01347 * 179.97438 * 22 21 20 24 24 C 1.38786 * 120.02763 * 359.44547 * 14 13 11 25 25 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.01766 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.82381 * 180.27403 * 13 11 10 28 28 H 0.96702 * 113.99582 * 89.99945 * 19 18 16 29 29 H 1.07997 * 119.88493 * 180.25783 * 20 18 16 30 30 H 1.07993 * 119.89802 * 179.74107 * 21 20 18 31 31 H 1.07999 * 120.16669 * 180.29594 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3966 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0486 -1.2342 0.2884 9 6 1.3524 -2.4069 -0.3758 10 6 0.2233 -2.3604 -1.2149 11 6 -0.4131 -3.5285 -1.5788 12 9 -1.4969 -3.4807 -2.3839 13 6 0.0571 -4.7522 -1.1268 14 6 1.1729 -4.8136 -0.2890 15 6 1.6655 -6.1269 0.1950 16 6 0.8756 -6.9004 1.0446 17 9 -0.3411 -6.4567 1.4295 18 6 1.3452 -8.1243 1.4981 19 8 0.5807 -8.8791 2.3317 20 6 2.5925 -8.5807 1.0975 21 6 3.3762 -7.8146 0.2546 22 6 2.9202 -6.5915 -0.1980 23 17 3.9088 -5.6335 -1.2557 24 6 1.8245 -3.6471 0.0864 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1450 -1.4105 -1.5729 27 1 -0.4449 -5.6623 -1.4205 28 1 -0.0070 -9.4965 1.8752 29 1 2.9542 -9.5358 1.4486 30 1 4.3481 -8.1731 -0.0505 31 1 2.6904 -3.6924 0.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244542607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:08 Heat of formation + Delta-G solvation = -119.353834 kcal Electronic energy + Delta-G solvation = -22339.458748 eV Core-core repulsion = 18439.537250 eV Total energy + Delta-G solvation = -3899.921498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 310.031 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.97263 -49.63959 -40.76059 -39.35616 -38.11023 -37.01246 -35.70992 -33.09629 -31.59201 -30.65949 -29.60243 -27.44113 -24.76639 -23.76920 -22.71238 -22.32272 -19.92374 -18.96606 -18.60759 -18.00634 -17.69669 -17.11364 -16.75997 -16.58784 -16.50634 -16.30418 -16.21401 -15.74154 -14.98182 -14.76116 -14.62849 -14.27523 -13.93502 -13.77722 -13.48905 -13.23402 -12.95140 -12.83070 -12.63591 -12.23511 -12.08367 -12.08089 -11.87998 -11.78569 -11.48578 -11.11100 -10.06307 -9.60619 -9.50668 -9.23142 -8.73931 -6.49969 -0.22921 -0.13153 0.72335 0.76366 1.09321 1.37771 1.45235 1.54285 2.16740 2.22708 2.54329 2.86340 3.24784 3.41601 3.46721 3.76464 3.90790 4.04828 4.32528 4.40068 4.60938 4.69899 4.77892 4.92067 4.96784 4.98605 5.06835 5.20106 5.44411 5.55048 5.64813 5.72490 5.88253 6.15238 6.49371 6.66975 6.78268 6.78468 8.22492 Molecular weight = 310.03amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.004711 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.191173 B = 5942.095823 C = 6514.040558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.219 4.219 11 C 0.096 3.904 12 F -0.164 7.164 13 C -0.254 4.254 14 C -0.007 4.007 15 C -0.062 4.062 16 C 0.066 3.934 17 F -0.140 7.140 18 C 0.085 3.915 19 O -0.492 6.492 20 C -0.091 4.091 21 C -0.089 4.089 22 C -0.021 4.021 23 Cl -0.053 7.053 24 C -0.197 4.197 25 H 0.292 0.708 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.415 0.585 29 H 0.191 0.809 30 H 0.181 0.819 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -14.849 1.112 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.511 4.511 8 H 0.107 0.893 9 C 0.103 3.897 10 C -0.239 4.239 11 C 0.077 3.923 12 F -0.143 7.143 13 C -0.274 4.274 14 C -0.007 4.007 15 C -0.064 4.064 16 C 0.045 3.955 17 F -0.119 7.119 18 C 0.039 3.961 19 O -0.306 6.306 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.048 4.048 23 Cl -0.023 7.023 24 C -0.217 4.217 25 H 0.103 0.897 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.275 0.725 29 H 0.208 0.792 30 H 0.198 0.802 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.819 -14.295 1.459 15.906 hybrid contribution -1.016 1.090 -0.605 1.608 sum 5.803 -13.205 0.854 14.449 Atomic orbital electron populations 1.69878 1.09375 1.31095 1.34112 1.26886 0.95418 1.04993 0.90837 0.85096 0.79647 0.75667 0.78997 1.17520 1.18949 1.18925 1.19909 0.98769 0.91768 1.40610 0.89302 1.17576 0.90429 0.93350 0.88337 1.21272 1.02045 0.95771 1.04834 1.17661 0.85502 0.95308 0.93788 1.91327 1.53505 1.97579 1.71935 1.20314 1.02559 0.94944 1.09572 1.17924 0.94930 0.91050 0.96831 1.18744 0.94257 0.94594 0.98831 1.18366 0.82131 0.95623 0.99335 1.91480 1.41331 1.89627 1.89429 1.18472 0.93566 0.89729 0.94357 1.84837 1.57197 1.55139 1.33390 1.21638 0.91594 1.01970 0.95728 1.21334 1.02027 0.90715 0.96694 1.20989 0.91408 0.94796 0.97636 1.98396 1.68028 1.71892 1.64020 1.21068 1.03455 0.91224 1.05935 0.89722 0.86952 0.86851 0.72523 0.79162 0.80177 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.03 10.96 21.82 0.24 -42.79 16 2 C 0.03 1.73 5.13 85.25 0.44 2.17 16 3 Si 0.99 37.32 29.60 68.60 2.03 39.35 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.48 -25.36 9.05 23.46 0.21 -25.14 16 8 H 0.09 4.43 7.91 -2.91 -0.02 4.40 16 9 C 0.11 5.70 5.57 -21.32 -0.12 5.58 16 10 C -0.22 -12.03 8.67 22.81 0.20 -11.83 16 11 C 0.10 4.96 7.28 22.29 0.16 5.13 16 12 F -0.16 -8.13 17.26 44.97 0.78 -7.36 16 13 C -0.25 -11.95 9.55 22.72 0.22 -11.73 16 14 C -0.01 -0.31 4.35 -20.10 -0.09 -0.40 16 15 C -0.06 -2.25 5.31 -19.99 -0.11 -2.36 16 16 C 0.07 2.18 7.25 22.67 0.16 2.35 16 17 F -0.14 -5.46 16.52 44.97 0.74 -4.71 16 18 C 0.08 2.03 6.70 22.50 0.15 2.18 16 19 O -0.49 -9.99 13.37 -93.40 -1.25 -11.24 16 20 C -0.09 -1.55 9.97 22.39 0.22 -1.32 16 21 C -0.09 -1.73 9.81 22.26 0.22 -1.51 16 22 C -0.02 -0.62 6.32 22.54 0.14 -0.48 16 23 Cl -0.05 -1.63 27.29 -2.72 -0.07 -1.70 16 24 C -0.20 -9.59 8.55 22.96 0.20 -9.40 16 25 H 0.29 13.78 8.30 -92.71 -0.77 13.02 16 26 H 0.11 6.47 6.15 -2.91 -0.02 6.45 16 27 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.41 4.10 9.06 -74.06 -0.67 3.43 16 29 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -65.82 303.46 5.02 -60.80 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.55 Total: 14.43 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 2.01 Total: -46.77 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.24 Total: -42.79 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.25 Total: -11.24 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 1.52 Total: -12.07 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -65.82 5.02 -60.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244542607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.559 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds