Wall clock time and date at job start Tue Mar 31 2020 09:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21586 * 119.99236 * 0.02562 * 13 12 2 15 15 N 1.34775 * 120.00414 * 180.02562 * 13 12 2 16 16 C 1.39072 * 119.99896 * 180.02562 * 15 13 12 17 17 N 1.29891 * 125.65800 * 0.02840 * 16 15 13 18 18 N 1.26249 * 117.66062 * 179.97438 * 17 16 15 19 19 C 1.29502 * 116.58524 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.14339 * 180.02562 * 19 18 17 21 21 F 1.39893 * 109.47453 * 5.02441 * 20 19 18 22 22 F 1.39898 * 109.47229 * 125.02777 * 20 19 18 23 23 F 1.39910 * 109.47161 * 245.02420 * 20 19 18 24 24 S 1.71315 * 125.65233 * 179.71884 * 16 15 13 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 30 30 H 0.96994 * 119.99639 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8583 1.1614 -2.4116 15 7 2.5958 -0.6538 -3.4577 16 6 2.7291 0.0401 -4.6556 17 7 2.4548 1.2966 -4.8373 18 7 2.6329 1.7743 -5.9923 19 6 3.0768 0.9585 -6.8947 20 6 3.3651 1.2972 -8.3345 21 9 3.1887 2.6705 -8.5349 22 9 4.6845 0.9469 -8.6409 23 9 2.4898 0.5886 -9.1647 24 16 3.2894 -0.6189 -6.1343 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9026 -0.5284 4.4375 29 1 2.2490 -1.6318 -1.1526 30 1 2.8258 -1.5951 -3.4143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154066551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:52 Heat of formation + Delta-G solvation = -112.005295 kcal Electronic energy + Delta-G solvation = -22613.001988 eV Core-core repulsion = 18349.259130 eV Total energy + Delta-G solvation = -4263.742858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.38902 -48.91078 -48.88007 -42.80419 -41.28611 -37.48153 -36.33028 -34.50963 -32.97323 -31.60399 -28.85483 -27.23722 -26.32878 -24.31132 -22.56099 -21.63960 -21.31269 -20.21179 -19.81205 -19.68922 -18.99206 -18.40249 -17.77238 -17.51403 -16.98028 -16.20950 -16.14674 -15.69301 -15.65752 -15.28888 -15.17652 -15.01100 -14.99997 -14.95822 -14.90197 -14.14547 -14.01591 -13.80310 -13.40716 -12.90456 -12.78338 -12.15831 -12.11866 -11.88729 -11.58249 -11.30410 -11.16407 -11.08714 -10.88480 -10.38105 -9.91482 -8.38997 -6.45008 -1.15045 -1.00286 -0.39811 0.95516 1.04379 1.28386 1.33430 1.38222 1.46324 2.00060 2.20087 2.25998 2.78731 2.84975 2.98033 3.04036 3.45903 3.66441 4.41889 4.51620 4.64285 4.67655 4.94640 5.21174 5.36901 5.50486 5.53403 6.14902 6.56804 6.80592 7.14168 7.22397 7.37334 8.75743 Molecular weight = 310.05amu Principal moments of inertia in cm(-1) A = 0.040058 B = 0.002875 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.811307 B = 9735.537811 C =10061.480916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.260 3.740 3 H 0.025 0.975 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.933 3.067 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.695 5.695 13 C 0.691 3.309 14 O -0.577 6.577 15 N -0.612 5.612 16 C 0.253 3.747 17 N -0.316 5.316 18 N -0.184 5.184 19 C -0.159 4.159 20 C 0.577 3.423 21 F -0.159 7.159 22 F -0.154 7.154 23 F -0.155 7.155 24 S 0.326 5.674 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.271 0.729 29 H 0.413 0.587 30 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -4.773 -24.810 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.155 3.845 3 H 0.043 0.957 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.760 3.240 9 H -0.185 1.185 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.349 5.349 13 C 0.388 3.612 14 O -0.451 6.451 15 N -0.269 5.269 16 C -0.116 4.116 17 N -0.164 5.164 18 N -0.025 5.025 19 C -0.441 4.441 20 C 0.518 3.482 21 F -0.140 7.140 22 F -0.135 7.135 23 F -0.136 7.136 24 S 0.565 5.435 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.249 0.751 30 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.524 -24.371 24.768 hybrid contribution -0.232 0.078 0.670 0.714 sum 2.428 -3.447 -23.701 24.073 Atomic orbital electron populations 1.22385 0.97691 1.02041 0.99499 1.18742 0.91136 0.93008 0.81595 0.95708 1.21192 1.32544 1.13821 0.89457 0.91692 1.25458 0.96730 0.99039 0.95424 1.69952 1.46499 1.41779 0.98685 0.86100 0.80001 0.80637 0.77217 1.18463 1.22158 1.18859 1.45095 1.68283 1.14407 1.07139 1.16188 0.79069 0.85112 0.80781 1.91054 1.55054 1.15327 1.83676 1.42002 1.66276 1.14500 1.04114 1.26229 0.97881 0.93178 0.94315 1.71803 1.23603 1.09229 1.11814 1.71485 1.07690 1.28949 0.94401 1.30006 1.15706 0.96979 1.01454 1.16323 0.75044 0.75167 0.81705 1.93273 1.95038 1.30479 1.95208 1.93293 1.34975 1.91750 1.93527 1.93295 1.69064 1.78268 1.72982 1.84278 1.58120 1.05529 0.95538 0.93712 0.94017 0.91057 0.91985 0.75067 0.70995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.50 8.96 71.98 0.65 -5.86 16 2 C 0.26 11.57 2.15 44.25 0.10 11.67 16 3 H 0.03 1.27 6.63 -2.39 -0.02 1.25 16 4 C -0.53 -27.20 9.31 25.60 0.24 -26.96 16 5 H 0.06 3.47 7.98 -2.91 -0.02 3.44 16 6 C 0.03 1.83 5.45 84.66 0.46 2.29 16 7 N -0.93 -53.77 13.96 21.45 0.30 -53.48 16 8 Si 0.93 43.43 24.37 68.60 1.67 45.10 16 9 H -0.26 -11.31 6.87 99.48 0.68 -10.62 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 12 N -0.70 -24.03 5.07 -461.41 -2.34 -26.37 16 13 C 0.69 23.85 8.49 179.05 1.52 25.37 16 14 O -0.58 -26.04 14.69 -3.99 -0.06 -26.10 16 15 N -0.61 -14.09 5.41 -326.97 -1.77 -15.86 16 16 C 0.25 6.26 8.14 179.10 1.46 7.72 16 17 N -0.32 -10.67 9.73 -59.09 -0.58 -11.24 16 18 N -0.18 -5.56 11.43 -47.68 -0.54 -6.10 16 19 C -0.16 -3.41 7.08 88.45 0.63 -2.78 16 20 C 0.58 10.34 3.57 71.23 0.25 10.60 16 21 F -0.16 -3.37 17.14 44.97 0.77 -2.60 16 22 F -0.15 -2.39 17.30 44.97 0.78 -1.61 16 23 F -0.15 -2.46 17.30 44.97 0.78 -1.68 16 24 S 0.33 4.66 23.31 -56.49 -1.32 3.34 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.78 3.27 -2.39 -0.01 1.78 16 27 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 29 H 0.41 11.26 8.55 -92.71 -0.79 10.46 16 30 H 0.45 5.43 8.83 -92.71 -0.82 4.61 16 Total: -1.00 -72.47 293.25 2.56 -69.90 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -0.43 Total: 4.66 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 5.30 Total: 22.05 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.93 Total: -113.05 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 2.33 Total: -5.90 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.67 Total: 45.10 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.32 Total: 3.34 kcal Total: -72.47 2.56 -69.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154066551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.104 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds