Wall clock time and date at job start Tue Mar 31 2020 09:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35859 * 119.78265 * 2 1 4 4 C 1.36781 * 119.11985 * 180.23022 * 3 2 1 5 5 C 1.48256 * 120.62745 * 179.79447 * 4 3 2 6 6 N 1.30842 * 126.42451 * 359.69595 * 5 4 3 7 7 O 1.21294 * 110.08349 * 180.02562 * 6 5 4 8 8 C 1.33675 * 110.03770 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.42454 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47042 * 270.02524 * 9 8 7 11 11 C 1.76199 * 99.99871 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00150 * 359.72084 * 11 10 9 13 13 C 1.38795 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31634 * 120.00230 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 89.99967 * 15 13 11 17 17 H 1.48494 * 109.47201 * 209.99720 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99693 * 15 13 11 19 19 N 1.30964 * 107.14549 * 0.26227 * 8 7 6 20 20 C 1.41743 * 118.74125 * 359.51905 * 4 3 2 21 21 O 1.35088 * 120.24922 * 180.23388 * 20 4 3 22 22 N 1.32274 * 119.50650 * 0.24860 * 20 4 3 23 23 C 1.33315 * 120.84720 * 0.02562 * 22 20 4 24 24 O 1.21949 * 119.32290 * 179.97438 * 23 22 20 25 25 H 1.09007 * 109.47377 * 180.23744 * 1 2 3 26 26 H 1.09000 * 109.47301 * 300.23662 * 1 2 3 27 27 H 1.09003 * 109.47265 * 60.23525 * 1 2 3 28 28 H 1.08001 * 120.43784 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46904 * 150.02384 * 9 8 7 30 30 H 1.09005 * 109.47194 * 30.02426 * 9 8 7 31 31 H 0.96991 * 120.00676 * 180.02562 * 14 13 11 32 32 H 0.96696 * 114.00297 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1398 1.1791 0.0000 4 6 3.5075 1.1633 -0.0048 5 6 4.2775 2.4302 -0.0095 6 7 3.7813 3.6409 -0.0153 7 8 4.6774 4.4583 -0.0185 8 6 5.8621 3.8392 -0.0144 9 6 7.2168 4.4994 -0.0158 10 16 7.7607 4.7568 -1.7229 11 6 9.3231 5.5187 -1.4346 12 1 9.6608 5.6925 -0.4235 13 6 10.1171 5.9012 -2.5068 14 7 9.7032 5.6943 -3.7392 15 14 11.7738 6.7082 -2.2012 16 1 12.8254 5.6632 -2.1158 17 1 12.0866 7.6349 -3.3186 18 1 11.7265 7.4683 -0.9264 19 7 5.6246 2.5512 -0.0141 20 6 4.1747 -0.0873 0.0008 21 8 5.5246 -0.1384 0.0011 22 7 3.4656 -1.2039 0.0055 23 6 2.1330 -1.1675 0.0045 24 8 1.5069 -2.2140 0.0084 25 1 -0.3634 -1.0277 0.0043 26 1 -0.3634 0.5175 0.8878 27 1 -0.3634 0.5102 -0.8921 28 1 1.6034 2.1165 -0.0004 29 1 7.9328 3.8606 0.5013 30 1 7.1531 5.4607 0.4940 31 1 10.2581 5.9612 -4.4885 32 1 5.8842 -1.0360 0.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350794520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:18 Heat of formation + Delta-G solvation = 46.715296 kcal Electronic energy + Delta-G solvation = -21983.495399 eV Core-core repulsion = 18268.491923 eV Total energy + Delta-G solvation = -3715.003476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.30522 -42.10717 -39.00030 -37.21377 -35.75180 -34.91231 -33.65248 -32.59244 -31.23977 -28.53951 -28.01210 -25.69253 -25.40081 -24.56674 -22.98843 -21.67810 -19.95332 -18.58362 -18.25284 -17.96389 -17.47994 -16.91516 -16.77156 -15.86970 -15.17519 -14.94120 -14.80962 -14.72764 -14.44395 -14.10546 -13.81966 -13.72894 -13.19953 -13.08046 -12.84500 -12.47893 -12.08504 -11.49465 -11.19745 -11.17843 -11.14029 -11.05493 -10.80578 -10.49331 -10.28439 -10.24878 -9.65607 -9.21239 -8.75001 -8.56142 -6.77206 -6.38776 -4.13601 0.16545 0.84821 1.43218 1.92173 2.49498 2.86508 2.95212 3.15359 3.17007 3.22928 3.33137 3.41533 3.44348 3.75805 3.90059 4.04324 4.21302 4.52202 4.72372 4.78879 4.90229 4.98961 5.11786 5.15910 5.27915 5.51214 5.63087 5.76120 5.89829 6.06755 6.17019 6.90263 7.39119 7.45689 7.77807 8.19912 8.28059 9.07413 10.69173 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.002803 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.777977 B = 9985.372698 C =10410.965194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.525 5.525 3 C 0.238 3.762 4 C -0.168 4.168 5 C 0.227 3.773 6 N -0.393 5.393 7 O 0.081 5.919 8 C 0.234 3.766 9 C -0.044 4.044 10 S -0.080 6.080 11 C -0.526 4.526 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.924 3.076 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.270 1.270 19 N -0.453 5.453 20 C 0.490 3.510 21 O -0.407 6.407 22 N -0.612 5.612 23 C 0.655 3.345 24 O -0.531 6.531 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.192 0.808 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.271 0.729 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 -6.172 8.685 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.240 5.240 3 C 0.098 3.902 4 C -0.180 4.180 5 C -0.044 4.044 6 N -0.104 5.104 7 O 0.022 5.978 8 C 0.014 3.986 9 C -0.193 4.193 10 S 0.145 5.855 11 C -0.674 4.674 12 H 0.099 0.901 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.750 3.250 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.195 1.195 19 N -0.187 5.187 20 C 0.287 3.713 21 O -0.197 6.197 22 N -0.370 5.370 23 C 0.357 3.643 24 O -0.405 6.405 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.209 0.791 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -16.170 -7.646 7.524 19.404 hybrid contribution 1.655 1.167 1.140 2.324 sum -14.514 -6.478 8.664 18.102 Atomic orbital electron populations 1.22324 0.75522 1.06972 1.03833 1.46327 1.10855 1.06703 1.60146 1.22303 0.91293 0.91479 0.85153 1.16487 0.90457 0.88495 1.22537 1.22859 0.88026 0.91455 1.02049 1.74783 1.12931 0.99648 1.23028 1.85255 1.12764 1.33840 1.65909 1.28252 0.90918 0.86536 0.92930 1.22020 0.86668 1.02492 1.08120 1.85216 1.24316 1.79695 0.96252 1.22703 1.02775 1.46033 0.95904 0.90120 1.25025 0.98858 0.95274 0.94348 1.69991 1.37692 1.44359 0.98163 0.86071 0.81680 0.79013 0.78223 1.20099 1.20699 1.19460 1.72194 1.11117 1.14915 1.20482 1.20222 0.85317 0.87961 0.77822 1.85326 1.13496 1.36564 1.84359 1.69798 1.05800 1.26626 1.34793 1.17465 0.84718 0.83093 0.79067 1.90990 1.66076 1.29701 1.53727 0.87216 0.89662 0.89591 0.79127 0.86899 0.87796 0.91932 0.72812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.59 59.84 0.63 0.94 16 2 N -0.52 -5.00 2.98 -129.05 -0.39 -5.38 16 3 C 0.24 2.12 10.12 -16.30 -0.16 1.96 16 4 C -0.17 -2.07 5.87 -104.97 -0.62 -2.69 16 5 C 0.23 3.41 7.79 -156.09 -1.22 2.19 16 6 N -0.39 -5.89 11.88 30.98 0.37 -5.52 16 7 O 0.08 1.31 11.29 18.02 0.20 1.52 16 8 C 0.23 4.00 7.75 -12.98 -0.10 3.90 16 9 C -0.04 -0.79 6.30 36.01 0.23 -0.57 16 10 S -0.08 -1.93 21.42 -107.50 -2.30 -4.23 16 11 C -0.53 -13.68 9.50 30.94 0.29 -13.38 16 12 H 0.08 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 14 N -0.87 -24.43 13.22 55.49 0.73 -23.69 16 15 Si 0.92 20.09 29.55 -169.99 -5.02 15.07 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 19 N -0.45 -7.76 10.20 -9.87 -0.10 -7.87 16 20 C 0.49 6.22 7.92 -16.02 -0.13 6.10 16 21 O -0.41 -4.85 12.01 -16.97 -0.20 -5.05 16 22 N -0.61 -8.46 10.39 -16.51 -0.17 -8.63 16 23 C 0.65 8.99 8.33 -88.45 -0.74 8.26 16 24 O -0.53 -8.75 16.44 4.96 0.08 -8.67 16 25 H 0.11 0.76 6.84 -51.93 -0.35 0.40 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.19 1.10 7.88 -52.49 -0.41 0.69 16 29 H 0.11 1.93 8.14 -51.92 -0.42 1.50 16 30 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.42 3.04 8.98 45.56 0.41 3.45 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -34.72 312.74 -5.58 -40.31 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -1.59 Total: -1.14 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.90 Total: 8.59 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.44 Total: -51.09 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.30 Total: -4.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.72 -5.58 -40.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350794520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.022 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds