Wall clock time and date at job start Tue Mar 31 2020 09:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35859 * 119.78265 * 2 1 4 4 C 1.36781 * 119.11985 * 180.23022 * 3 2 1 5 5 C 1.48256 * 120.62745 * 179.79447 * 4 3 2 6 6 N 1.30842 * 126.42451 * 359.69595 * 5 4 3 7 7 O 1.21294 * 110.08349 * 180.02562 * 6 5 4 8 8 C 1.33675 * 110.03770 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.42454 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47042 * 270.02524 * 9 8 7 11 11 C 1.76199 * 99.99871 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00150 * 359.72084 * 11 10 9 13 13 C 1.38795 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31634 * 120.00230 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 89.99967 * 15 13 11 17 17 H 1.48494 * 109.47201 * 209.99720 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99693 * 15 13 11 19 19 N 1.30964 * 107.14549 * 0.26227 * 8 7 6 20 20 C 1.41743 * 118.74125 * 359.51905 * 4 3 2 21 21 O 1.35088 * 120.24922 * 180.23388 * 20 4 3 22 22 N 1.32274 * 119.50650 * 0.24860 * 20 4 3 23 23 C 1.33315 * 120.84720 * 0.02562 * 22 20 4 24 24 O 1.21949 * 119.32290 * 179.97438 * 23 22 20 25 25 H 1.09007 * 109.47377 * 180.23744 * 1 2 3 26 26 H 1.09000 * 109.47301 * 300.23662 * 1 2 3 27 27 H 1.09003 * 109.47265 * 60.23525 * 1 2 3 28 28 H 1.08001 * 120.43784 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46904 * 150.02384 * 9 8 7 30 30 H 1.09005 * 109.47194 * 30.02426 * 9 8 7 31 31 H 0.96991 * 120.00676 * 180.02562 * 14 13 11 32 32 H 0.96696 * 114.00297 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1398 1.1791 0.0000 4 6 3.5075 1.1633 -0.0048 5 6 4.2775 2.4302 -0.0095 6 7 3.7813 3.6409 -0.0153 7 8 4.6774 4.4583 -0.0185 8 6 5.8621 3.8392 -0.0144 9 6 7.2168 4.4994 -0.0158 10 16 7.7607 4.7568 -1.7229 11 6 9.3231 5.5187 -1.4346 12 1 9.6608 5.6925 -0.4235 13 6 10.1171 5.9012 -2.5068 14 7 9.7032 5.6943 -3.7392 15 14 11.7738 6.7082 -2.2012 16 1 12.8254 5.6632 -2.1158 17 1 12.0866 7.6349 -3.3186 18 1 11.7265 7.4683 -0.9264 19 7 5.6246 2.5512 -0.0141 20 6 4.1747 -0.0873 0.0008 21 8 5.5246 -0.1384 0.0011 22 7 3.4656 -1.2039 0.0055 23 6 2.1330 -1.1675 0.0045 24 8 1.5069 -2.2140 0.0084 25 1 -0.3634 -1.0277 0.0043 26 1 -0.3634 0.5175 0.8878 27 1 -0.3634 0.5102 -0.8921 28 1 1.6034 2.1165 -0.0004 29 1 7.9328 3.8606 0.5013 30 1 7.1531 5.4607 0.4940 31 1 10.2581 5.9612 -4.4885 32 1 5.8842 -1.0360 0.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350794520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:17 Heat of formation + Delta-G solvation = 16.827007 kcal Electronic energy + Delta-G solvation = -21984.791453 eV Core-core repulsion = 18268.491923 eV Total energy + Delta-G solvation = -3716.299530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.52564 -43.02623 -39.94215 -38.21658 -36.95259 -35.81996 -34.88374 -34.56251 -32.27969 -29.90035 -28.66319 -27.65471 -26.32690 -25.64117 -24.08061 -22.84123 -20.90249 -19.96079 -19.45277 -19.19923 -18.72972 -17.81212 -17.80636 -16.93270 -16.85966 -16.33355 -16.07858 -15.73790 -15.61774 -15.18224 -14.85152 -14.72978 -14.56216 -14.35055 -13.59733 -13.43000 -13.38176 -13.14139 -12.88068 -12.83025 -12.39950 -12.23920 -12.06541 -11.93761 -11.34280 -11.22552 -11.12732 -11.11836 -10.38379 -9.69317 -8.70697 -8.35657 -6.13900 -0.66621 -0.25698 0.17068 1.12236 1.22816 1.44021 1.46852 1.57323 1.65245 1.84915 2.00714 2.25564 2.31557 2.45260 2.74947 2.94339 3.01671 3.27169 3.42066 3.73666 3.96865 4.09671 4.13967 4.28877 4.40758 4.48117 4.68987 4.75203 4.79103 4.92423 5.05180 5.46436 6.10841 6.22022 6.43931 6.82034 7.02514 7.07984 8.73583 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.002803 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.777977 B = 9985.372698 C =10410.965194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.515 5.515 3 C 0.277 3.723 4 C -0.202 4.202 5 C 0.235 3.765 6 N -0.387 5.387 7 O 0.075 5.925 8 C 0.228 3.772 9 C -0.019 4.019 10 S -0.148 6.148 11 C -0.535 4.535 12 H 0.091 0.909 13 C 0.018 3.982 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.256 1.256 19 N -0.470 5.470 20 C 0.492 3.508 21 O -0.418 6.418 22 N -0.637 5.637 23 C 0.648 3.352 24 O -0.569 6.569 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.232 0.768 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.272 0.728 32 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 -5.177 9.927 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.227 5.227 3 C 0.136 3.864 4 C -0.213 4.213 5 C -0.036 4.036 6 N -0.099 5.099 7 O 0.019 5.981 8 C 0.007 3.993 9 C -0.168 4.168 10 S 0.078 5.922 11 C -0.683 4.683 12 H 0.109 0.891 13 C -0.187 4.187 14 N -0.546 5.546 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.180 1.180 19 N -0.204 5.204 20 C 0.290 3.710 21 O -0.212 6.212 22 N -0.397 5.397 23 C 0.350 3.650 24 O -0.446 6.446 25 H 0.112 0.888 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.248 0.752 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -17.091 -6.632 8.781 20.327 hybrid contribution 1.762 0.777 0.811 2.089 sum -15.329 -5.855 9.592 19.007 Atomic orbital electron populations 1.22720 0.72630 1.06975 1.06970 1.46383 1.12529 1.05764 1.58042 1.22788 0.90251 0.92264 0.81132 1.16565 0.91734 0.87200 1.25785 1.23140 0.87433 0.92220 1.00778 1.74750 1.12319 0.99409 1.23413 1.85246 1.12594 1.34154 1.66129 1.27973 0.90879 0.86665 0.93782 1.21785 0.87279 1.04085 1.03681 1.85238 1.24599 1.79925 1.02417 1.23100 1.03215 1.45480 0.96468 0.89074 1.26042 1.02786 0.95862 0.94032 1.70136 1.39326 1.45969 0.99189 0.84980 0.76723 0.78011 0.78499 1.19629 1.20598 1.17995 1.72187 1.12600 1.14986 1.20669 1.20256 0.85383 0.87942 0.77386 1.85297 1.13495 1.38184 1.84192 1.69689 1.06443 1.27507 1.36025 1.17542 0.84767 0.83758 0.78965 1.90963 1.66744 1.31267 1.55637 0.88813 0.86335 0.86633 0.75158 0.85955 0.85516 0.91932 0.71040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.59 127.77 1.35 1.71 16 2 N -0.51 -8.51 2.98 -680.47 -2.03 -10.54 16 3 C 0.28 4.07 10.12 83.73 0.85 4.91 16 4 C -0.20 -4.61 5.87 -20.09 -0.12 -4.72 16 5 C 0.24 6.68 7.79 137.21 1.07 7.75 16 6 N -0.39 -10.79 11.88 -58.99 -0.70 -11.49 16 7 O 0.08 2.33 11.29 74.55 0.84 3.17 16 8 C 0.23 7.54 7.75 88.36 0.68 8.23 16 9 C -0.02 -0.67 6.30 71.24 0.45 -0.22 16 10 S -0.15 -7.16 21.42 -56.49 -1.21 -8.37 16 11 C -0.53 -27.68 9.50 67.95 0.65 -27.03 16 12 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 13 C 0.02 0.95 5.49 84.86 0.47 1.42 16 14 N -0.91 -52.01 13.22 21.65 0.29 -51.72 16 15 Si 1.00 40.80 29.55 68.60 2.03 42.82 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 19 N -0.47 -15.67 10.20 -302.38 -3.08 -18.75 16 20 C 0.49 12.21 7.92 85.49 0.68 12.89 16 21 O -0.42 -9.95 12.01 -83.63 -1.00 -10.95 16 22 N -0.64 -17.48 10.39 -438.26 -4.55 -22.04 16 23 C 0.65 17.31 8.33 179.59 1.50 18.81 16 24 O -0.57 -18.81 16.44 -5.15 -0.08 -18.89 16 25 H 0.09 1.13 6.84 -2.38 -0.02 1.11 16 26 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.23 1.52 7.88 -2.91 -0.02 1.49 16 29 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 30 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.43 6.43 8.98 -74.06 -0.66 5.76 16 Total: -1.00 -76.77 312.74 -1.40 -78.17 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.55 Total: 4.84 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 7.57 Total: 23.74 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -10.08 Total: -114.54 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.25 Total: -26.67 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.21 Total: -8.37 kcal Total: -76.77 -1.40 -78.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350794520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.995 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds