Wall clock time and date at job start Tue Mar 31 2020 09:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38763 * 120.79282 * 2 1 4 4 Br 1.89102 * 120.42627 * 359.95839 * 3 2 1 5 5 C 1.38270 * 119.14028 * 179.97438 * 3 2 1 6 6 N 1.31876 * 120.75512 * 359.97438 * 5 3 2 7 7 C 1.31849 * 121.73299 * 359.71209 * 6 5 3 8 8 C 1.38235 * 120.78764 * 0.58032 * 7 6 5 9 9 C 1.50704 * 120.41655 * 179.70595 * 8 7 6 10 10 N 1.46902 * 109.47153 * 105.51233 * 9 8 7 11 11 C 1.47959 * 110.99613 * 167.08431 * 10 9 8 12 12 C 1.53939 * 86.17832 * 137.58282 * 11 10 9 13 13 C 1.50690 * 113.73517 * 221.81102 * 12 11 10 14 14 H 1.08003 * 120.00205 * 358.10299 * 13 12 11 15 15 C 1.37876 * 120.00333 * 178.09868 * 13 12 11 16 16 N 1.31523 * 119.99904 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00437 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46918 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47600 * 120.00191 * 17 15 13 20 20 H 1.48509 * 109.47111 * 240.00545 * 17 15 13 21 21 C 1.48299 * 111.00663 * 266.44028 * 10 9 8 22 22 H 1.08997 * 109.47107 * 271.67439 * 1 2 3 23 23 H 1.08997 * 109.47227 * 31.67749 * 1 2 3 24 24 H 1.09002 * 109.46847 * 151.67377 * 1 2 3 25 25 H 1.08001 * 119.62040 * 180.02562 * 5 3 2 26 26 H 1.08005 * 119.61114 * 180.30186 * 7 6 5 27 27 H 1.09000 * 109.46686 * 345.51544 * 9 8 7 28 28 H 1.08996 * 109.46750 * 225.51711 * 9 8 7 29 29 H 1.08999 * 113.76067 * 23.27028 * 11 10 9 30 30 H 1.09002 * 113.86012 * 251.91098 * 11 10 9 31 31 H 1.09002 * 113.72744 * 90.63600 * 12 11 10 32 32 H 0.96991 * 119.99976 * 179.97438 * 16 15 13 33 33 H 1.08997 * 113.85831 * 108.14287 * 21 10 9 34 34 H 1.09004 * 113.75714 * 336.68059 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1920 0.0000 4 35 1.3069 2.8494 -0.0012 5 6 3.5995 1.1521 0.0005 6 7 4.2409 -0.0001 0.0016 7 6 3.5984 -1.1515 0.0077 8 6 2.2166 -1.1907 0.0014 9 6 1.4908 -2.5114 0.0018 10 7 0.9241 -2.7583 1.3345 11 6 -0.0449 -3.8758 1.2998 12 6 0.6035 -4.3431 2.6155 13 6 0.8146 -5.8331 2.6919 14 1 0.4897 -6.4670 1.8801 15 6 1.4227 -6.3874 3.7983 16 7 1.8181 -5.6157 4.7871 17 14 1.6851 -8.2345 3.8928 18 1 1.1546 -8.8734 2.6617 19 1 3.1367 -8.5228 4.0145 20 1 0.9718 -8.7758 5.0775 21 6 1.8519 -3.5625 2.1661 22 1 -0.3633 0.0300 1.0272 23 1 -0.3633 0.8745 -0.5396 24 1 -0.3633 -0.9046 -0.4876 25 1 4.1601 2.0752 0.0010 26 1 4.1583 -2.0750 0.0133 27 1 2.1890 -3.3097 -0.2496 28 1 0.6882 -2.4851 -0.7352 29 1 0.1067 -4.5629 0.4673 30 1 -1.0833 -3.5627 1.4090 31 1 0.1286 -3.9349 3.5077 32 1 2.2456 -6.0056 5.5656 33 1 2.3285 -2.9974 2.9671 34 1 2.5571 -4.1582 1.5863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:09 Heat of formation + Delta-G solvation = 64.899740 kcal Electronic energy + Delta-G solvation = -17534.219189 eV Core-core repulsion = 14707.073201 eV Total energy + Delta-G solvation = -2827.145988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 310.038 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46954 -38.61167 -34.48118 -33.29865 -32.36971 -30.15731 -28.76503 -27.69109 -25.74832 -24.99290 -23.13860 -22.29149 -20.89133 -18.65702 -16.96410 -16.69794 -16.43885 -15.21067 -14.98810 -14.55880 -14.29260 -13.85382 -13.74963 -13.25578 -12.83664 -12.73702 -12.42151 -11.98699 -11.90796 -11.54290 -11.26560 -11.17486 -11.01134 -10.70141 -10.46302 -10.34028 -9.93378 -9.50868 -9.44141 -9.11938 -9.08039 -8.76895 -8.48998 -8.00640 -6.09910 -4.15083 0.88711 1.18474 1.46785 3.24540 3.33386 3.36145 3.63732 4.35909 4.39423 4.64416 4.65696 4.79233 4.90348 5.17610 5.21742 5.44807 5.47455 5.59593 5.66513 5.82602 5.86969 6.00829 6.14803 6.28247 6.30199 6.41463 6.55875 6.56652 6.68434 7.07660 7.11238 7.67065 7.83498 7.85251 7.96833 8.30402 8.87929 9.50601 10.99440 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.003289 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.517420 B = 8511.659854 C = 8800.038949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.008 3.992 3 C -0.153 4.153 4 Br -0.043 7.043 5 C 0.124 3.876 6 N -0.482 5.482 7 C 0.120 3.880 8 C -0.108 4.108 9 C 0.060 3.940 10 N -0.485 5.485 11 C -0.001 4.001 12 C 0.039 3.961 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.014 3.986 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 15.651 -11.546 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.002 4.002 3 C -0.234 4.234 4 Br 0.041 6.959 5 C -0.036 4.036 6 N -0.190 5.190 7 C -0.037 4.037 8 C -0.111 4.111 9 C -0.069 4.069 10 N -0.207 5.207 11 C -0.129 4.129 12 C 0.020 3.980 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.115 4.115 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.177 0.823 26 H 0.177 0.823 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.155 16.908 -11.170 20.265 hybrid contribution -0.029 -2.074 -0.188 2.083 sum -0.184 14.833 -11.358 18.683 Atomic orbital electron populations 1.20942 0.89247 1.03120 1.04132 1.20070 0.97464 0.90565 0.92109 1.22853 0.96157 0.92130 1.12286 1.96651 1.77441 1.24043 1.97720 1.22698 0.89438 0.96946 0.94469 1.67815 1.40049 0.98070 1.13096 1.22866 0.91399 0.96263 0.93180 1.20813 0.94486 0.95697 1.00139 1.21543 0.98052 0.92016 0.95288 1.68608 1.10492 1.33792 1.07852 1.24089 0.96431 0.91299 1.01129 1.20296 0.90665 0.95014 0.91986 1.21115 1.39380 0.91618 1.03690 0.92379 1.25012 0.95275 0.97877 0.95433 1.69975 1.39819 1.34931 1.07529 0.86577 0.77882 0.85685 0.78102 1.19732 1.20977 1.20906 1.24213 0.97315 0.94021 0.95901 0.89082 0.91101 0.90414 0.82350 0.82300 0.92704 0.90469 0.92563 0.91477 0.92341 0.92883 0.91494 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.16 36.00 0.33 -1.11 16 2 C 0.01 0.11 5.92 -104.29 -0.62 -0.51 16 3 C -0.15 -2.00 6.24 -39.38 -0.25 -2.24 16 4 Br -0.04 -0.47 32.01 -68.01 -2.18 -2.65 16 5 C 0.12 1.63 10.94 -17.52 -0.19 1.44 16 6 N -0.48 -7.12 10.36 -13.23 -0.14 -7.26 16 7 C 0.12 1.75 10.83 -17.55 -0.19 1.56 16 8 C -0.11 -1.59 5.48 -104.48 -0.57 -2.16 16 9 C 0.06 0.91 4.29 -4.97 -0.02 0.89 16 10 N -0.48 -8.95 6.06 -239.48 -1.45 -10.41 16 11 C 0.00 -0.02 7.48 -2.76 -0.02 -0.04 16 12 C 0.04 0.94 3.59 -90.84 -0.33 0.62 16 13 C -0.52 -13.65 8.77 -34.45 -0.30 -13.96 16 14 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 17 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.01 0.31 7.55 -2.57 -0.02 0.29 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 23 H 0.07 0.76 6.86 -51.93 -0.36 0.40 16 24 H 0.08 0.93 6.35 -51.93 -0.33 0.60 16 25 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 26 H 0.16 2.10 8.00 -52.48 -0.42 1.68 16 27 H 0.05 0.83 7.15 -51.93 -0.37 0.46 16 28 H 0.08 1.06 6.72 -51.93 -0.35 0.71 16 29 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.22 7.40 -51.93 -0.38 0.84 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -27.83 305.40 -10.00 -37.83 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.28 Total: 0.12 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.28 Total: -13.53 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.85 Total: -41.97 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.18 Total: -2.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.83 -10.00 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.733 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds