Wall clock time and date at job start Tue Mar 31 2020 09:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38763 * 120.79282 * 2 1 4 4 Br 1.89102 * 120.42627 * 359.95839 * 3 2 1 5 5 C 1.38270 * 119.14028 * 179.97438 * 3 2 1 6 6 N 1.31876 * 120.75512 * 359.97438 * 5 3 2 7 7 C 1.31849 * 121.73299 * 359.71209 * 6 5 3 8 8 C 1.38235 * 120.78764 * 0.58032 * 7 6 5 9 9 C 1.50704 * 120.41655 * 179.70595 * 8 7 6 10 10 N 1.46902 * 109.47153 * 105.51233 * 9 8 7 11 11 C 1.47959 * 110.99613 * 167.08431 * 10 9 8 12 12 C 1.53939 * 86.17832 * 137.58282 * 11 10 9 13 13 C 1.50690 * 113.73517 * 221.81102 * 12 11 10 14 14 H 1.08003 * 120.00205 * 358.10299 * 13 12 11 15 15 C 1.37876 * 120.00333 * 178.09868 * 13 12 11 16 16 N 1.31523 * 119.99904 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00437 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46918 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47600 * 120.00191 * 17 15 13 20 20 H 1.48509 * 109.47111 * 240.00545 * 17 15 13 21 21 C 1.48299 * 111.00663 * 266.44028 * 10 9 8 22 22 H 1.08997 * 109.47107 * 271.67439 * 1 2 3 23 23 H 1.08997 * 109.47227 * 31.67749 * 1 2 3 24 24 H 1.09002 * 109.46847 * 151.67377 * 1 2 3 25 25 H 1.08001 * 119.62040 * 180.02562 * 5 3 2 26 26 H 1.08005 * 119.61114 * 180.30186 * 7 6 5 27 27 H 1.09000 * 109.46686 * 345.51544 * 9 8 7 28 28 H 1.08996 * 109.46750 * 225.51711 * 9 8 7 29 29 H 1.08999 * 113.76067 * 23.27028 * 11 10 9 30 30 H 1.09002 * 113.86012 * 251.91098 * 11 10 9 31 31 H 1.09002 * 113.72744 * 90.63600 * 12 11 10 32 32 H 0.96991 * 119.99976 * 179.97438 * 16 15 13 33 33 H 1.08997 * 113.85831 * 108.14287 * 21 10 9 34 34 H 1.09004 * 113.75714 * 336.68059 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1920 0.0000 4 35 1.3069 2.8494 -0.0012 5 6 3.5995 1.1521 0.0005 6 7 4.2409 -0.0001 0.0016 7 6 3.5984 -1.1515 0.0077 8 6 2.2166 -1.1907 0.0014 9 6 1.4908 -2.5114 0.0018 10 7 0.9241 -2.7583 1.3345 11 6 -0.0449 -3.8758 1.2998 12 6 0.6035 -4.3431 2.6155 13 6 0.8146 -5.8331 2.6919 14 1 0.4897 -6.4670 1.8801 15 6 1.4227 -6.3874 3.7983 16 7 1.8181 -5.6157 4.7871 17 14 1.6851 -8.2345 3.8928 18 1 1.1546 -8.8734 2.6617 19 1 3.1367 -8.5228 4.0145 20 1 0.9718 -8.7758 5.0775 21 6 1.8519 -3.5625 2.1661 22 1 -0.3633 0.0300 1.0272 23 1 -0.3633 0.8745 -0.5396 24 1 -0.3633 -0.9046 -0.4876 25 1 4.1601 2.0752 0.0010 26 1 4.1583 -2.0750 0.0133 27 1 2.1890 -3.3097 -0.2496 28 1 0.6882 -2.4851 -0.7352 29 1 0.1067 -4.5629 0.4673 30 1 -1.0833 -3.5627 1.4090 31 1 0.1286 -3.9349 3.5077 32 1 2.2456 -6.0056 5.5656 33 1 2.3285 -2.9974 2.9671 34 1 2.5571 -4.1582 1.5863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:09 Heat of formation + Delta-G solvation = 47.973483 kcal Electronic energy + Delta-G solvation = -17534.953167 eV Core-core repulsion = 14707.073201 eV Total energy + Delta-G solvation = -2827.879966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 310.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58793 -40.17046 -35.63864 -34.76767 -33.93898 -31.27576 -30.14052 -28.80435 -27.40597 -26.65134 -24.65978 -23.36862 -22.15018 -20.40604 -18.62547 -18.03797 -17.49359 -16.73395 -16.52430 -16.00803 -15.80301 -15.23022 -15.03801 -14.48152 -13.87881 -13.83233 -13.76675 -13.53679 -13.43811 -13.12502 -12.89073 -12.51149 -12.36010 -12.24166 -12.07270 -11.63953 -11.35630 -11.18259 -10.95464 -10.54838 -10.52379 -10.24683 -9.86718 -9.58432 -8.14073 -6.25359 -0.17365 0.10898 0.48340 1.41686 1.44439 1.55022 2.42747 2.54791 3.16262 3.25802 3.42310 3.61500 3.65568 3.81483 3.98707 4.27055 4.29653 4.45606 4.52468 4.57326 4.63886 4.72481 4.80338 4.85101 4.89584 5.01301 5.15276 5.23855 5.26457 5.50078 5.55668 5.65428 5.87198 6.30982 6.36249 6.78500 6.84852 7.43766 8.95356 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.003289 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.517420 B = 8511.659854 C = 8800.038949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.001 3.999 3 C -0.160 4.160 4 Br -0.020 7.020 5 C 0.122 3.878 6 N -0.500 5.500 7 C 0.110 3.890 8 C -0.122 4.122 9 C 0.064 3.936 10 N -0.478 5.478 11 C 0.017 3.983 12 C 0.018 3.982 13 C -0.529 4.529 14 H 0.061 0.939 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.954 3.046 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.027 3.973 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.182 0.818 26 H 0.166 0.834 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 15.987 -13.111 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.009 4.009 3 C -0.241 4.241 4 Br 0.064 6.936 5 C -0.037 4.037 6 N -0.209 5.209 7 C -0.047 4.047 8 C -0.125 4.125 9 C -0.065 4.065 10 N -0.201 5.201 11 C -0.111 4.111 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.080 0.920 15 C -0.184 4.184 16 N -0.562 5.562 17 Si 0.780 3.220 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.103 4.103 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.199 0.801 26 H 0.183 0.817 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.610 17.248 -12.755 21.461 hybrid contribution 0.083 -2.054 0.278 2.075 sum -0.527 15.194 -12.477 19.667 Atomic orbital electron populations 1.20947 0.88176 1.04159 1.03803 1.20314 0.98327 0.90621 0.91592 1.23005 0.96385 0.93008 1.11705 1.96669 1.76964 1.22308 1.97632 1.23125 0.89884 0.97305 0.93343 1.67837 1.40614 0.98575 1.13865 1.23035 0.91671 0.96704 0.93257 1.20767 0.94563 0.95724 1.01439 1.21542 0.98838 0.92520 0.93604 1.68508 1.09257 1.32592 1.09713 1.23935 0.97205 0.91369 0.98617 1.20292 0.92674 0.94177 0.92994 1.21485 1.38632 0.92994 1.03647 0.92049 1.25798 0.95238 1.02162 0.95233 1.70103 1.41074 1.36790 1.08198 0.85565 0.77643 0.80536 0.78271 1.18624 1.20842 1.20857 1.23895 0.96653 0.93802 0.95910 0.89971 0.89577 0.89897 0.80063 0.81709 0.92416 0.88223 0.91366 0.89878 0.95980 0.93006 0.94038 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 9.16 71.24 0.65 -1.91 16 2 C 0.00 0.04 5.92 -19.65 -0.12 -0.08 16 3 C -0.16 -3.89 6.24 22.40 0.14 -3.75 16 4 Br -0.02 -0.40 32.01 -20.37 -0.65 -1.05 16 5 C 0.12 3.03 10.94 84.69 0.93 3.96 16 6 N -0.50 -14.31 10.36 -195.77 -2.03 -16.34 16 7 C 0.11 3.13 10.83 84.69 0.92 4.05 16 8 C -0.12 -3.43 5.48 -19.77 -0.11 -3.53 16 9 C 0.06 1.83 4.29 85.56 0.37 2.19 16 10 N -0.48 -17.23 6.06 -911.59 -5.53 -22.76 16 11 C 0.02 0.64 7.48 86.41 0.65 1.28 16 12 C 0.02 0.86 3.59 -10.89 -0.04 0.82 16 13 C -0.53 -27.88 8.77 25.60 0.22 -27.65 16 14 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.01 0.81 5.46 84.65 0.46 1.27 16 16 N -0.92 -53.41 13.29 21.45 0.28 -53.12 16 17 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 C 0.03 1.17 7.55 86.34 0.65 1.82 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 1.63 6.86 -2.39 -0.02 1.62 16 24 H 0.08 1.76 6.35 -2.39 -0.02 1.74 16 25 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 26 H 0.17 4.30 8.00 -2.91 -0.02 4.28 16 27 H 0.06 1.65 7.15 -2.39 -0.02 1.64 16 28 H 0.10 2.44 6.72 -2.39 -0.02 2.42 16 29 H 0.07 2.40 7.87 -2.39 -0.02 2.38 16 30 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.40 7.40 -2.38 -0.02 2.38 16 Total: -1.00 -59.53 305.40 -0.07 -59.60 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.10 Total: 10.83 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 4.72 Total: -21.53 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -7.27 Total: -92.22 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.65 Total: -1.05 kcal Total: -59.53 -0.07 -59.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.570 kcal (2) G-P(sol) polarization free energy of solvation -59.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds