Wall clock time and date at job start Tue Mar 31 2020 09:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39665 * 119.95724 * 85.66226 * 3 2 1 5 5 C 1.37946 * 120.04099 * 179.76332 * 4 3 2 6 6 F 1.35101 * 120.01873 * 180.25662 * 5 4 3 7 7 C 1.40014 * 119.95901 * 0.53709 * 5 4 3 8 8 C 1.47471 * 120.04604 * 179.70011 * 7 5 4 9 9 O 1.21623 * 120.00213 * 270.02257 * 8 7 5 10 10 N 1.34774 * 120.00156 * 90.01703 * 8 7 5 11 11 C 1.36814 * 120.00186 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99528 * 9.36115 * 11 10 8 13 13 C 1.39096 * 119.99975 * 189.36704 * 11 10 8 14 14 N 1.31336 * 120.00163 * 24.53626 * 13 11 10 15 15 Si 1.86795 * 119.99585 * 204.53863 * 13 11 10 16 16 H 1.48498 * 109.47391 * 59.99889 * 15 13 11 17 17 H 1.48502 * 109.47107 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47192 * 299.99432 * 15 13 11 19 19 C 1.46506 * 120.00131 * 0.02562 * 10 8 7 20 20 C 1.50696 * 109.46904 * 88.46202 * 19 10 8 21 21 O 1.20828 * 120.00629 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99877 * 180.02562 * 20 19 10 23 23 C 1.40021 * 119.91556 * 359.71873 * 7 5 4 24 24 F 1.35095 * 120.02414 * 179.97438 * 23 7 5 25 25 C 1.37955 * 119.95623 * 359.97438 * 23 7 5 26 26 H 1.08007 * 119.97499 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00021 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47047 * 208.45776 * 19 10 8 29 29 H 1.08994 * 109.46821 * 328.46238 * 19 10 8 30 30 H 0.96703 * 117.00283 * 180.02562 * 22 20 19 31 31 H 1.07997 * 119.98169 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2655 -0.0906 -1.2066 5 6 4.6450 -0.0852 -1.2090 6 9 5.3192 -0.1682 -2.3768 7 6 5.3459 0.0005 0.0000 8 6 6.8207 -0.0003 0.0002 9 8 7.4283 -1.0513 0.0746 10 7 7.4952 1.1636 -0.0822 11 6 8.8633 1.1629 -0.0826 12 1 9.4027 0.2313 -0.1695 13 6 9.5594 2.3619 0.0290 14 7 8.9925 3.3997 0.6003 15 14 11.3007 2.4959 -0.6337 16 1 11.2982 2.2170 -2.0922 17 1 11.8176 3.8672 -0.3933 18 1 12.1706 1.5105 0.0573 19 6 6.7634 2.4296 -0.1714 20 6 6.4799 2.9447 1.2161 21 8 6.8506 2.3184 2.1806 22 8 5.8146 4.0989 1.3807 23 6 4.6450 0.0864 1.2091 24 9 5.3191 0.1686 2.3769 25 6 3.2654 0.0871 1.2070 26 1 2.7244 -0.1611 -2.1387 27 1 9.4778 4.2360 0.6778 28 1 7.3644 3.1593 -0.7140 29 1 5.8230 2.2693 -0.6986 30 1 5.6567 4.3890 2.2896 31 1 2.7243 0.1530 2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:01 Heat of formation + Delta-G solvation = -131.340051 kcal Electronic energy + Delta-G solvation = -26028.232179 eV Core-core repulsion = 21719.374506 eV Total energy + Delta-G solvation = -4308.857673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.97803 -48.76319 -39.83525 -39.06535 -38.08642 -36.47306 -35.37297 -34.62447 -32.22908 -31.26805 -30.67892 -27.89733 -26.04819 -24.21953 -23.01418 -21.29080 -20.08150 -19.60177 -17.52333 -17.37645 -17.16737 -16.85157 -16.52621 -16.00913 -15.75175 -15.59638 -15.39148 -15.13274 -14.64831 -14.51832 -14.26055 -14.05718 -13.71681 -13.60801 -13.25813 -13.09741 -12.48067 -12.20452 -12.14598 -11.89953 -11.80751 -11.75227 -11.66463 -11.04268 -10.59198 -10.45984 -10.44153 -9.76215 -9.23305 -9.15591 -8.96774 -8.78361 -8.18624 -6.67294 -4.03675 0.21696 0.78781 2.32312 2.47922 2.98079 3.16018 3.19341 3.26023 3.28028 3.38575 3.44789 3.81919 3.92540 4.07869 4.28363 4.35957 4.60797 4.64012 4.87368 5.05836 5.12918 5.56721 5.66402 5.68225 5.74625 5.83906 6.31717 6.43038 6.46412 7.13720 7.35698 7.43014 7.68368 8.13909 8.83623 8.92828 9.07636 9.54645 10.40881 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.005465 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.458512 B = 5122.002376 C = 5656.378229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.262 3.738 3 C 0.029 3.971 4 C -0.122 4.122 5 C 0.154 3.846 6 F -0.112 7.112 7 C -0.138 4.138 8 C 0.481 3.519 9 O -0.556 6.556 10 N -0.403 5.403 11 C -0.308 4.308 12 H 0.115 0.885 13 C 0.035 3.965 14 N -0.871 5.871 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.139 3.861 20 C 0.487 3.513 21 O -0.492 6.492 22 O -0.533 6.533 23 C 0.161 3.839 24 F -0.099 7.099 25 C -0.123 4.123 26 H 0.156 0.844 27 H 0.276 0.724 28 H 0.136 0.864 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.957 0.952 -2.555 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.054 4.054 3 C 0.025 3.975 4 C -0.144 4.144 5 C 0.133 3.867 6 F -0.090 7.090 7 C -0.144 4.144 8 C 0.268 3.732 9 O -0.440 6.440 10 N -0.120 5.120 11 C -0.435 4.435 12 H 0.133 0.867 13 C -0.169 4.169 14 N -0.509 5.509 15 Si 0.760 3.240 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.013 3.987 20 C 0.326 3.674 21 O -0.376 6.376 22 O -0.344 6.344 23 C 0.140 3.860 24 F -0.077 7.077 25 C -0.144 4.144 26 H 0.173 0.827 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.091 0.909 30 H 0.250 0.750 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.080 0.322 -2.600 11.386 hybrid contribution 1.435 0.585 0.567 1.650 sum -9.645 0.907 -2.033 9.899 Atomic orbital electron populations 1.81278 1.11660 1.08099 1.06890 1.25261 0.92081 0.94014 0.94026 1.15231 0.84599 1.04568 0.93103 1.20988 0.91851 1.02774 0.98744 1.17076 0.88815 0.99923 0.80872 1.91609 1.80146 1.92883 1.44374 1.20746 0.97983 1.03734 0.91934 1.17198 0.84192 0.85460 0.86302 1.90691 1.67718 1.30633 1.54930 1.43399 1.06480 1.02150 1.60010 1.19767 0.79215 0.95710 1.48768 0.86708 1.25299 1.00923 0.95209 0.95508 1.69772 1.39906 1.03906 1.37359 0.85861 0.80925 0.77499 0.79748 1.19501 1.20826 1.19533 1.20852 0.96911 0.89514 0.91468 1.23580 0.72887 0.77607 0.93316 1.90659 1.47023 1.58020 1.41947 1.84504 1.71729 1.41690 1.36495 1.17156 0.88803 0.98581 0.81466 1.91706 1.79878 1.92355 1.43741 1.21047 0.91953 1.02638 0.98802 0.82658 0.91306 0.84658 0.90898 0.75027 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.09 18.54 41.84 0.78 -4.32 16 2 C 0.26 2.82 15.31 -22.47 -0.34 2.48 16 3 C 0.03 0.30 5.73 -106.91 -0.61 -0.31 16 4 C -0.12 -1.31 9.71 -39.16 -0.38 -1.69 16 5 C 0.15 2.26 6.84 -39.02 -0.27 2.00 16 6 F -0.11 -1.78 16.82 2.25 0.04 -1.74 16 7 C -0.14 -2.51 3.95 -104.80 -0.41 -2.93 16 8 C 0.48 11.44 6.30 -12.50 -0.08 11.36 16 9 O -0.56 -15.21 16.70 5.26 0.09 -15.13 16 10 N -0.40 -9.79 2.11 -117.31 -0.25 -10.04 16 11 C -0.31 -8.10 9.42 -15.01 -0.14 -8.24 16 12 H 0.12 3.18 7.31 -52.49 -0.38 2.79 16 13 C 0.03 0.86 4.90 -17.45 -0.09 0.77 16 14 N -0.87 -21.42 9.08 55.50 0.50 -20.92 16 15 Si 0.93 19.42 29.62 -169.99 -5.03 14.39 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C 0.14 2.90 5.03 -5.19 -0.03 2.87 16 20 C 0.49 10.24 6.44 36.00 0.23 10.48 16 21 O -0.49 -12.06 15.36 -18.75 -0.29 -12.35 16 22 O -0.53 -9.06 13.42 -39.26 -0.53 -9.59 16 23 C 0.16 2.62 7.26 -39.02 -0.28 2.34 16 24 F -0.10 -1.93 15.20 2.25 0.03 -1.89 16 25 C -0.12 -1.44 9.71 -39.15 -0.38 -1.82 16 26 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 27 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.14 2.91 6.23 -51.93 -0.32 2.59 16 29 H 0.07 1.27 6.60 -51.93 -0.34 0.92 16 30 H 0.39 5.08 9.10 45.56 0.41 5.50 16 31 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -32.31 302.44 -3.50 -35.81 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -0.62 Total: 3.90 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: -2.78 Total: 17.31 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 1.03 Total: -35.27 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.73 Total: -37.07 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.31 -3.50 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.534 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds