Wall clock time and date at job start Tue Mar 31 2020 09:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39665 * 119.95724 * 85.66226 * 3 2 1 5 5 C 1.37946 * 120.04099 * 179.76332 * 4 3 2 6 6 F 1.35101 * 120.01873 * 180.25662 * 5 4 3 7 7 C 1.40014 * 119.95901 * 0.53709 * 5 4 3 8 8 C 1.47471 * 120.04604 * 179.70011 * 7 5 4 9 9 O 1.21623 * 120.00213 * 270.02257 * 8 7 5 10 10 N 1.34774 * 120.00156 * 90.01703 * 8 7 5 11 11 C 1.36814 * 120.00186 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99528 * 9.36115 * 11 10 8 13 13 C 1.39096 * 119.99975 * 189.36704 * 11 10 8 14 14 N 1.31336 * 120.00163 * 24.53626 * 13 11 10 15 15 Si 1.86795 * 119.99585 * 204.53863 * 13 11 10 16 16 H 1.48498 * 109.47391 * 59.99889 * 15 13 11 17 17 H 1.48502 * 109.47107 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47192 * 299.99432 * 15 13 11 19 19 C 1.46506 * 120.00131 * 0.02562 * 10 8 7 20 20 C 1.50696 * 109.46904 * 88.46202 * 19 10 8 21 21 O 1.20828 * 120.00629 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99877 * 180.02562 * 20 19 10 23 23 C 1.40021 * 119.91556 * 359.71873 * 7 5 4 24 24 F 1.35095 * 120.02414 * 179.97438 * 23 7 5 25 25 C 1.37955 * 119.95623 * 359.97438 * 23 7 5 26 26 H 1.08007 * 119.97499 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00021 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47047 * 208.45776 * 19 10 8 29 29 H 1.08994 * 109.46821 * 328.46238 * 19 10 8 30 30 H 0.96703 * 117.00283 * 180.02562 * 22 20 19 31 31 H 1.07997 * 119.98169 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2655 -0.0906 -1.2066 5 6 4.6450 -0.0852 -1.2090 6 9 5.3192 -0.1682 -2.3768 7 6 5.3459 0.0005 0.0000 8 6 6.8207 -0.0003 0.0002 9 8 7.4283 -1.0513 0.0746 10 7 7.4952 1.1636 -0.0822 11 6 8.8633 1.1629 -0.0826 12 1 9.4027 0.2313 -0.1695 13 6 9.5594 2.3619 0.0290 14 7 8.9925 3.3997 0.6003 15 14 11.3007 2.4959 -0.6337 16 1 11.2982 2.2170 -2.0922 17 1 11.8176 3.8672 -0.3933 18 1 12.1706 1.5105 0.0573 19 6 6.7634 2.4296 -0.1714 20 6 6.4799 2.9447 1.2161 21 8 6.8506 2.3184 2.1806 22 8 5.8146 4.0989 1.3807 23 6 4.6450 0.0864 1.2091 24 9 5.3191 0.1686 2.3769 25 6 3.2654 0.0871 1.2070 26 1 2.7244 -0.1611 -2.1387 27 1 9.4778 4.2360 0.6778 28 1 7.3644 3.1593 -0.7140 29 1 5.8230 2.2693 -0.6986 30 1 5.6567 4.3890 2.2896 31 1 2.7243 0.1530 2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:00 Heat of formation + Delta-G solvation = -153.010665 kcal Electronic energy + Delta-G solvation = -26029.171888 eV Core-core repulsion = 21719.374506 eV Total energy + Delta-G solvation = -4309.797382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.16245 -50.09132 -41.40401 -40.41965 -39.63143 -37.49079 -37.08126 -36.36420 -33.98879 -32.61837 -31.74380 -29.62523 -27.61228 -25.71589 -24.11527 -22.91509 -21.66459 -20.71640 -19.17173 -18.88163 -18.63952 -18.46924 -17.60916 -17.43972 -17.17117 -16.93423 -16.90843 -16.44152 -16.16527 -16.08689 -15.90987 -15.03194 -15.01340 -14.99337 -14.59493 -14.48469 -13.75354 -13.65015 -13.49672 -13.46546 -13.34602 -13.02787 -12.93185 -12.67451 -12.43541 -12.15790 -12.08499 -11.55410 -10.97545 -10.85868 -10.19980 -10.04224 -10.02501 -8.55588 -6.00560 -0.87782 -0.26814 1.26827 1.42200 1.42857 1.45205 1.54219 1.60897 1.78893 2.15972 2.24586 2.43737 2.47726 2.73039 2.80202 2.98357 3.20964 3.44676 3.67526 3.69388 4.04791 4.12032 4.47750 4.55830 4.68529 4.70835 4.80082 4.87483 5.34821 5.39664 5.82510 5.97112 6.24988 6.26002 6.95271 7.15572 7.43574 7.72150 8.51021 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.005465 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.458512 B = 5122.002376 C = 5656.378229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.288 3.712 3 C 0.052 3.948 4 C -0.085 4.085 5 C 0.146 3.854 6 F -0.123 7.123 7 C -0.167 4.167 8 C 0.473 3.527 9 O -0.613 6.613 10 N -0.414 5.414 11 C -0.350 4.350 12 H 0.084 0.916 13 C 0.010 3.990 14 N -0.879 5.879 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.280 1.280 19 C 0.137 3.863 20 C 0.495 3.505 21 O -0.532 6.532 22 O -0.517 6.517 23 C 0.137 3.863 24 F -0.126 7.126 25 C -0.093 4.093 26 H 0.198 0.802 27 H 0.282 0.718 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.414 0.586 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 2.247 -3.391 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.028 4.028 3 C 0.049 3.951 4 C -0.106 4.106 5 C 0.126 3.874 6 F -0.101 7.101 7 C -0.173 4.173 8 C 0.262 3.738 9 O -0.501 6.501 10 N -0.130 5.130 11 C -0.477 4.477 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.516 5.516 15 Si 0.817 3.183 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.206 1.206 19 C 0.012 3.988 20 C 0.336 3.664 21 O -0.420 6.420 22 O -0.330 6.330 23 C 0.117 3.883 24 F -0.104 7.104 25 C -0.114 4.114 26 H 0.215 0.785 27 H 0.092 0.908 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.274 0.726 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.656 1.682 -3.437 14.182 hybrid contribution 2.088 0.223 0.849 2.265 sum -11.568 1.905 -2.587 12.006 Atomic orbital electron populations 1.81350 1.12321 1.08635 1.07570 1.24831 0.91370 0.93274 0.93302 1.15114 0.84443 1.02992 0.92588 1.21285 0.89770 0.98999 1.00501 1.17150 0.89976 1.00945 0.79333 1.91585 1.80715 1.93108 1.44667 1.20432 0.94695 1.07721 0.94425 1.17988 0.86690 0.84475 0.84602 1.90622 1.69961 1.32378 1.57102 1.43515 1.06196 1.03591 1.59722 1.19647 0.80828 0.95380 1.51849 0.89823 1.26001 1.04243 0.94375 0.94735 1.69830 1.41090 1.04076 1.36630 0.84984 0.76384 0.77637 0.79265 1.18636 1.19268 1.20573 1.20935 0.97906 0.88031 0.91936 1.23469 0.72268 0.77928 0.92724 1.90653 1.48900 1.59365 1.43081 1.84428 1.70537 1.39664 1.38325 1.17390 0.90213 1.00784 0.79947 1.91637 1.80784 1.92939 1.45063 1.21237 0.89761 0.99771 1.00681 0.78484 0.90808 0.85467 0.87469 0.72602 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.93 18.54 19.00 0.35 -8.58 16 2 C 0.29 4.83 15.31 88.33 1.35 6.18 16 3 C 0.05 0.87 5.73 -21.34 -0.12 0.75 16 4 C -0.08 -1.46 9.71 22.55 0.22 -1.24 16 5 C 0.15 4.06 6.84 22.63 0.15 4.22 16 6 F -0.12 -3.79 16.82 44.97 0.76 -3.04 16 7 C -0.17 -6.11 3.95 -19.98 -0.08 -6.18 16 8 C 0.47 23.63 6.30 86.68 0.55 24.18 16 9 O -0.61 -35.99 16.70 -4.10 -0.07 -36.06 16 10 N -0.41 -20.96 2.11 -643.29 -1.36 -22.31 16 11 C -0.35 -19.41 9.42 84.12 0.79 -18.61 16 12 H 0.08 5.02 7.31 -2.91 -0.02 5.00 16 13 C 0.01 0.51 4.90 84.97 0.42 0.92 16 14 N -0.88 -43.42 9.08 21.69 0.20 -43.22 16 15 Si 0.99 40.39 29.62 68.60 2.03 42.42 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.14 5.76 5.03 85.63 0.43 6.19 16 20 C 0.49 20.69 6.44 71.23 0.46 21.15 16 21 O -0.53 -26.56 15.36 21.96 0.34 -26.23 16 22 O -0.52 -16.59 13.42 -51.41 -0.69 -17.28 16 23 C 0.14 4.38 7.26 22.64 0.16 4.54 16 24 F -0.13 -5.03 15.20 44.97 0.68 -4.34 16 25 C -0.09 -1.89 9.71 22.55 0.22 -1.67 16 26 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 28 H 0.13 5.51 6.23 -2.39 -0.01 5.49 16 29 H 0.11 3.64 6.60 -2.39 -0.02 3.63 16 30 H 0.41 9.78 9.10 -74.06 -0.67 9.11 16 31 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -75.75 302.44 7.37 -68.38 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.58 Total: 9.84 kcal Atomic # 6 Polarization: 35.87 SS G_CDS: 4.55 Total: 40.42 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -0.81 Total: -74.11 kcal Atomic # 8 Polarization: -79.15 SS G_CDS: -0.42 Total: -79.57 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.44 Total: -7.38 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -75.75 7.37 -68.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.630 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds