Wall clock time and date at job start Tue Mar 31 2020 09:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99803 * 2 1 4 4 N 1.46505 * 109.47110 * 124.99846 * 3 2 1 5 5 C 1.46500 * 119.99781 * 269.99581 * 4 3 2 6 6 C 1.50694 * 109.47268 * 270.00177 * 5 4 3 7 7 H 1.08000 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00056 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00255 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47109 * 59.99875 * 10 8 6 12 12 H 1.48495 * 109.47391 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47164 * 300.00376 * 10 8 6 14 14 C 1.39002 * 120.00189 * 89.99958 * 4 3 2 15 15 C 1.39091 * 119.69973 * 184.99893 * 14 4 3 16 16 C 1.38418 * 119.08415 * 179.74367 * 15 14 4 17 17 Br 1.89094 * 120.75727 * 180.22889 * 16 15 14 18 18 C 1.38992 * 118.48359 * 0.25449 * 16 15 14 19 19 C 1.37986 * 119.31905 * 359.97438 * 18 16 15 20 20 C 1.50699 * 119.56583 * 179.97438 * 19 18 16 21 21 N 1.31987 * 120.86512 * 359.97438 * 19 18 16 22 22 H 1.08001 * 120.00086 * 180.02562 * 1 2 3 23 23 H 1.07996 * 120.00263 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.00542 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47015 * 4.99892 * 3 2 1 26 26 H 1.08996 * 109.46993 * 244.99417 * 3 2 1 27 27 H 1.09003 * 109.47341 * 30.00128 * 5 4 3 28 28 H 1.09001 * 109.47296 * 150.00127 * 5 4 3 29 29 H 0.97001 * 120.00745 * 179.97438 * 9 8 6 30 30 H 1.08002 * 120.46108 * 0.02562 * 15 14 4 31 31 H 1.08002 * 120.34093 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.47173 * 90.00710 * 20 19 18 33 33 H 1.09006 * 109.46659 * 210.00058 * 20 19 18 34 34 H 1.09000 * 109.46975 * 329.99753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8371 1.6367 8 6 2.5182 4.0669 3.6080 9 7 1.9578 3.4665 4.6352 10 14 2.8725 5.8998 3.6771 11 1 2.1377 6.5875 2.5851 12 1 2.4315 6.4402 4.9881 13 1 4.3306 6.1286 3.5132 14 6 4.2890 0.8517 0.9779 15 6 5.1339 0.7832 2.0806 16 6 6.4195 0.2978 1.9142 17 35 7.6055 0.1780 3.3820 18 6 6.8189 -0.0990 0.6434 19 6 5.9291 0.0013 -0.4066 20 6 6.3565 -0.4268 -1.7868 21 7 4.7087 0.4671 -0.2178 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9352 -0.0004 24 1 1.8501 -0.9352 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4026 -0.9313 27 1 1.4886 1.6969 2.5459 28 1 3.0988 1.3606 3.2260 29 1 1.7288 3.9751 5.4287 30 1 4.7902 1.0999 3.0543 31 1 7.8154 -0.4818 0.4794 32 1 6.1254 -1.4827 -1.9276 33 1 5.8235 0.1642 -2.5317 34 1 7.4294 -0.2713 -1.8995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893949171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:06 Heat of formation + Delta-G solvation = 61.502322 kcal Electronic energy + Delta-G solvation = -17633.113756 eV Core-core repulsion = 14805.820444 eV Total energy + Delta-G solvation = -2827.293312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 310.038 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88837 -36.68436 -33.63178 -33.00048 -32.72994 -30.84789 -29.60941 -27.65385 -27.14916 -24.95328 -23.26067 -21.39275 -20.51439 -19.39935 -16.67297 -16.55519 -16.26656 -15.21393 -14.85212 -14.50953 -14.38312 -13.69491 -13.58378 -12.99213 -12.66094 -12.53525 -12.31990 -12.06497 -11.72243 -11.50165 -11.27102 -11.08766 -10.95915 -10.87113 -10.63724 -10.21681 -10.04128 -9.87963 -9.23219 -9.10141 -8.84322 -8.81279 -8.54794 -6.87759 -6.14354 -4.24839 1.55270 1.79042 1.83514 2.57396 3.25326 3.29992 3.33051 3.83607 4.24634 4.35334 4.76922 5.15685 5.26344 5.37167 5.48558 5.54143 5.60565 5.71350 5.74697 5.92419 5.95403 6.07828 6.19026 6.31394 6.37041 6.54543 6.79448 6.92503 7.05554 7.06646 7.19827 7.66103 7.84587 8.05789 8.22284 8.62980 8.85832 9.42539 10.89212 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.006583 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.593769 B = 4252.422490 C = 6151.039140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.153 3.847 4 N -0.577 5.577 5 C 0.251 3.749 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.430 3.570 15 C -0.203 4.203 16 C -0.002 4.002 17 Br -0.054 7.054 18 C -0.235 4.235 19 C 0.177 3.823 20 C -0.097 4.097 21 N -0.547 5.547 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 -8.606 -7.104 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.029 3.971 4 N -0.284 5.284 5 C 0.132 3.868 6 C -0.577 4.577 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.191 3.809 15 C -0.230 4.230 16 C -0.089 4.089 17 Br 0.031 6.969 18 C -0.260 4.260 19 C 0.037 3.963 20 C -0.155 4.155 21 N -0.267 5.267 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.472 -8.443 -6.987 13.264 hybrid contribution 0.431 1.008 0.694 1.297 sum 7.903 -7.436 -6.292 12.544 Atomic orbital electron populations 1.23758 0.95841 1.01476 1.02197 1.23430 0.96000 0.99416 0.98398 1.20413 0.91947 0.94346 0.90361 1.47147 1.06553 1.61275 1.13450 1.19430 0.96092 0.93570 0.77754 1.21477 1.41402 0.93316 1.01466 0.92169 1.24927 0.94713 0.98814 0.95270 1.69909 1.41334 1.36505 1.05235 0.86571 0.78958 0.84765 0.77299 1.20132 1.21069 1.20046 1.18298 0.86465 0.88285 0.87826 1.21565 0.92947 1.07180 1.01303 1.21738 0.93958 1.00771 0.92442 1.96649 1.60911 1.97334 1.41975 1.21287 1.01872 1.11141 0.91746 1.20751 0.88061 0.92203 0.95304 1.20647 1.01181 1.01687 0.91983 1.67019 1.17357 1.19120 1.23214 0.89026 0.88495 0.88068 0.90214 0.89691 0.94275 0.94485 0.92424 0.83160 0.85317 0.90722 0.90679 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 29.02 0.42 -2.40 16 2 C -0.15 -2.49 9.85 -36.02 -0.35 -2.84 16 3 C 0.15 2.79 5.91 -5.19 -0.03 2.76 16 4 N -0.58 -12.21 2.55 -176.59 -0.45 -12.67 16 5 C 0.25 6.11 5.00 -5.20 -0.03 6.08 16 6 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 10 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.43 8.81 7.37 -155.02 -1.14 7.66 16 15 C -0.20 -4.10 9.05 -39.20 -0.35 -4.46 16 16 C 0.00 -0.04 6.27 -39.24 -0.25 -0.28 16 17 Br -0.05 -0.84 33.77 -68.01 -2.30 -3.13 16 18 C -0.23 -3.67 9.52 -39.39 -0.37 -4.05 16 19 C 0.18 2.80 6.78 -82.62 -0.56 2.24 16 20 C -0.10 -1.10 10.17 36.00 0.37 -0.74 16 21 N -0.55 -10.15 8.99 -8.68 -0.08 -10.22 16 22 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 23 H 0.10 1.37 7.84 -52.49 -0.41 0.95 16 24 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 25 H 0.08 1.48 7.72 -51.93 -0.40 1.08 16 26 H 0.08 1.51 7.30 -51.93 -0.38 1.13 16 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.04 0.95 5.98 -51.93 -0.31 0.64 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.15 3.30 6.02 -52.49 -0.32 2.99 16 31 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -27.79 316.11 -9.39 -37.18 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.32 Total: 1.32 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.73 Total: -8.99 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.21 Total: -47.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -2.30 Total: -3.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.79 -9.39 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.679 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds