Wall clock time and date at job start Tue Mar 31 2020 09:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99803 * 2 1 4 4 N 1.46505 * 109.47110 * 124.99846 * 3 2 1 5 5 C 1.46500 * 119.99781 * 269.99581 * 4 3 2 6 6 C 1.50694 * 109.47268 * 270.00177 * 5 4 3 7 7 H 1.08000 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00056 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00255 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47109 * 59.99875 * 10 8 6 12 12 H 1.48495 * 109.47391 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47164 * 300.00376 * 10 8 6 14 14 C 1.39002 * 120.00189 * 89.99958 * 4 3 2 15 15 C 1.39091 * 119.69973 * 184.99893 * 14 4 3 16 16 C 1.38418 * 119.08415 * 179.74367 * 15 14 4 17 17 Br 1.89094 * 120.75727 * 180.22889 * 16 15 14 18 18 C 1.38992 * 118.48359 * 0.25449 * 16 15 14 19 19 C 1.37986 * 119.31905 * 359.97438 * 18 16 15 20 20 C 1.50699 * 119.56583 * 179.97438 * 19 18 16 21 21 N 1.31987 * 120.86512 * 359.97438 * 19 18 16 22 22 H 1.08001 * 120.00086 * 180.02562 * 1 2 3 23 23 H 1.07996 * 120.00263 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.00542 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47015 * 4.99892 * 3 2 1 26 26 H 1.08996 * 109.46993 * 244.99417 * 3 2 1 27 27 H 1.09003 * 109.47341 * 30.00128 * 5 4 3 28 28 H 1.09001 * 109.47296 * 150.00127 * 5 4 3 29 29 H 0.97001 * 120.00745 * 179.97438 * 9 8 6 30 30 H 1.08002 * 120.46108 * 0.02562 * 15 14 4 31 31 H 1.08002 * 120.34093 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.47173 * 90.00710 * 20 19 18 33 33 H 1.09006 * 109.46659 * 210.00058 * 20 19 18 34 34 H 1.09000 * 109.46975 * 329.99753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8371 1.6367 8 6 2.5182 4.0669 3.6080 9 7 1.9578 3.4665 4.6352 10 14 2.8725 5.8998 3.6771 11 1 2.1377 6.5875 2.5851 12 1 2.4315 6.4402 4.9881 13 1 4.3306 6.1286 3.5132 14 6 4.2890 0.8517 0.9779 15 6 5.1339 0.7832 2.0806 16 6 6.4195 0.2978 1.9142 17 35 7.6055 0.1780 3.3820 18 6 6.8189 -0.0990 0.6434 19 6 5.9291 0.0013 -0.4066 20 6 6.3565 -0.4268 -1.7868 21 7 4.7087 0.4671 -0.2178 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9352 -0.0004 24 1 1.8501 -0.9352 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4026 -0.9313 27 1 1.4886 1.6969 2.5459 28 1 3.0988 1.3606 3.2260 29 1 1.7288 3.9751 5.4287 30 1 4.7902 1.0999 3.0543 31 1 7.8154 -0.4818 0.4794 32 1 6.1254 -1.4827 -1.9276 33 1 5.8235 0.1642 -2.5317 34 1 7.4294 -0.2713 -1.8995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893949171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:06 Heat of formation + Delta-G solvation = 48.403376 kcal Electronic energy + Delta-G solvation = -17633.681769 eV Core-core repulsion = 14805.820444 eV Total energy + Delta-G solvation = -2827.861325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 310.038 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30126 -38.19576 -35.23338 -34.46962 -34.31390 -32.26982 -30.97383 -29.36065 -28.46530 -26.44868 -25.06871 -22.72471 -22.02748 -20.72843 -18.64498 -18.10339 -17.75284 -16.83081 -16.29884 -16.01187 -15.89828 -15.03726 -14.96010 -14.57900 -14.12757 -13.99049 -13.52905 -13.30871 -13.13786 -12.97795 -12.92441 -12.64094 -12.55495 -12.49221 -12.15821 -12.11198 -11.72192 -11.32999 -10.66926 -10.59693 -10.53218 -10.21852 -10.17184 -8.53629 -8.10888 -6.39459 0.14834 0.41384 0.48182 1.30638 1.37619 1.38849 1.47035 2.27017 2.42583 2.85614 3.05188 3.51943 3.96351 4.12232 4.16015 4.24154 4.25450 4.45765 4.62069 4.70084 4.86114 4.88764 4.89481 5.02578 5.07726 5.09475 5.19573 5.25955 5.60636 5.66270 5.68829 5.80385 6.01401 6.17501 6.64608 6.71272 7.20523 7.34958 8.81291 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.006583 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.593769 B = 4252.422490 C = 6151.039140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.172 4.172 3 C 0.156 3.844 4 N -0.590 5.590 5 C 0.272 3.728 6 C -0.547 4.547 7 H 0.049 0.951 8 C 0.021 3.979 9 N -0.921 5.921 10 Si 0.957 3.043 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.275 1.275 14 C 0.411 3.589 15 C -0.235 4.235 16 C -0.006 4.006 17 Br -0.035 7.035 18 C -0.223 4.223 19 C 0.174 3.826 20 C -0.093 4.093 21 N -0.553 5.553 22 H 0.116 0.884 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.269 0.731 30 H 0.121 0.879 31 H 0.164 0.836 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -9.082 -8.663 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C 0.034 3.966 4 N -0.299 5.299 5 C 0.151 3.849 6 C -0.586 4.586 7 H 0.067 0.933 8 C -0.180 4.180 9 N -0.560 5.560 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.200 1.200 14 C 0.175 3.825 15 C -0.263 4.263 16 C -0.093 4.093 17 Br 0.051 6.949 18 C -0.247 4.247 19 C 0.033 3.967 20 C -0.150 4.150 21 N -0.273 5.273 22 H 0.134 0.866 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.182 0.818 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.778 -8.935 -8.570 15.177 hybrid contribution 0.129 1.059 1.130 1.554 sum 8.907 -7.876 -7.440 14.025 Atomic orbital electron populations 1.23989 0.95223 1.02786 0.99248 1.23249 0.96547 0.98254 1.01065 1.20430 0.91522 0.95222 0.89442 1.46955 1.07669 1.62353 1.12877 1.18892 0.94390 0.92463 0.79187 1.21672 1.41153 0.94564 1.01194 0.93266 1.25680 0.94469 1.02935 0.94887 1.70008 1.42191 1.38062 1.05731 0.85628 0.78666 0.79853 0.77695 1.19337 1.20242 1.20007 1.18406 0.86229 0.89177 0.88726 1.21378 0.94661 1.10068 1.00167 1.21977 0.93342 0.99944 0.94084 1.96651 1.59570 1.97202 1.41504 1.21733 1.03214 1.09253 0.90542 1.21651 0.86972 0.90438 0.97619 1.20793 1.02907 1.02649 0.88697 1.67108 1.18813 1.19274 1.22097 0.86561 0.88222 0.88238 0.91274 0.89468 0.96241 0.96540 0.92231 0.86109 0.81817 0.88736 0.90630 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 14.32 67.78 0.97 -3.91 16 2 C -0.17 -5.60 9.85 25.65 0.25 -5.35 16 3 C 0.16 5.88 5.91 85.63 0.51 6.39 16 4 N -0.59 -26.05 2.55 -712.60 -1.82 -27.87 16 5 C 0.27 13.97 5.00 85.63 0.43 14.40 16 6 C -0.55 -30.24 9.39 25.60 0.24 -30.00 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.13 5.46 84.65 0.46 1.59 16 9 N -0.92 -52.98 13.29 21.45 0.28 -52.69 16 10 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.41 17.30 7.37 133.05 0.98 18.28 16 15 C -0.24 -9.85 9.05 22.52 0.20 -9.65 16 16 C -0.01 -0.21 6.27 22.49 0.14 -0.07 16 17 Br -0.03 -1.04 33.77 -20.37 -0.69 -1.73 16 18 C -0.22 -6.41 9.52 22.39 0.21 -6.20 16 19 C 0.17 5.11 6.78 42.48 0.29 5.40 16 20 C -0.09 -1.75 10.17 71.24 0.72 -1.03 16 21 N -0.55 -20.21 8.99 -181.38 -1.63 -21.84 16 22 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 23 H 0.10 2.73 7.84 -2.91 -0.02 2.71 16 24 H 0.10 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.07 2.66 7.72 -2.39 -0.02 2.65 16 26 H 0.09 3.16 7.30 -2.39 -0.02 3.14 16 27 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 28 H 0.02 0.92 5.98 -2.39 -0.01 0.90 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.12 5.70 6.02 -2.91 -0.02 5.69 16 31 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -61.34 316.11 4.67 -56.67 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.09 Total: 11.99 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 5.41 Total: -10.15 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -3.17 Total: -102.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -0.69 Total: -1.73 kcal Total: -61.34 4.67 -56.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.071 kcal (2) G-P(sol) polarization free energy of solvation -61.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds