Wall clock time and date at job start Tue Mar 31 2020 09:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38613 * 120.40886 * 2 1 4 4 C 1.38569 * 118.52071 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.41370 * 179.97438 * 4 3 2 6 6 F 1.39895 * 109.47106 * 90.00126 * 5 4 3 7 7 F 1.39895 * 109.47279 * 210.00325 * 5 4 3 8 8 F 1.39894 * 109.46979 * 330.00192 * 5 4 3 9 9 N 1.32319 * 119.17791 * 359.74996 * 4 3 2 10 10 C 1.32309 * 120.75424 * 0.50751 * 9 4 3 11 11 O 1.35453 * 119.19275 * 179.75864 * 10 9 4 12 12 C 1.42905 * 117.00184 * 359.72779 * 11 10 9 13 13 H 1.09004 * 109.47054 * 29.99789 * 12 11 10 14 14 C 1.50703 * 109.47264 * 149.99823 * 12 11 10 15 15 H 1.07998 * 119.99574 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 12 11 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46716 * 120.00463 * 18 16 14 21 21 H 1.48500 * 109.46999 * 240.00161 * 18 16 14 22 22 C 1.53002 * 109.47079 * 270.00091 * 12 11 10 23 23 Cl 1.80300 * 109.47084 * 64.99764 * 22 12 11 24 24 N 1.32281 * 120.41709 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47526 * 269.97835 * 1 2 3 26 26 H 1.08994 * 109.47496 * 29.98379 * 1 2 3 27 27 H 1.09009 * 109.46825 * 149.98131 * 1 2 3 28 28 H 1.08003 * 120.74476 * 359.97438 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 30 30 H 1.08997 * 109.47011 * 184.99710 * 22 12 11 31 31 H 1.09005 * 109.46847 * 304.99836 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1954 0.0000 4 6 3.5936 1.1498 -0.0005 5 6 4.3989 2.4236 -0.0011 6 9 4.6486 2.8180 1.3176 7 9 5.6133 2.2073 -0.6611 8 9 3.6823 3.4280 -0.6605 9 7 4.2002 -0.0261 0.0040 10 6 3.5000 -1.1487 -0.0011 11 8 4.1536 -2.3351 -0.0012 12 6 5.5820 -2.2889 -0.0017 13 1 5.9166 -1.3875 0.5118 14 6 6.1241 -3.5024 0.7087 15 1 5.4457 -4.2353 1.1199 16 6 7.4860 -3.6769 0.8336 17 7 8.3120 -2.7841 0.3333 18 14 8.1580 -5.1807 1.7148 19 1 7.0300 -6.0255 2.1825 20 1 9.0078 -5.9627 0.7813 21 1 8.9705 -4.7494 2.8806 22 6 6.0911 -2.2726 -1.4444 23 17 5.5642 -0.7484 -2.2505 24 7 2.1767 -1.1407 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6876 2.1415 -0.0004 29 1 9.2702 -2.9067 0.4216 30 1 7.1797 -2.3270 -1.4462 31 1 5.6837 -3.1282 -1.9832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226174267.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:06 Heat of formation + Delta-G solvation = -144.662500 kcal Electronic energy + Delta-G solvation = -24076.722911 eV Core-core repulsion = 19777.227473 eV Total energy + Delta-G solvation = -4299.495438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.044 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.04497 -47.62666 -47.41504 -41.05664 -37.99918 -34.83753 -34.52278 -33.60552 -32.09947 -29.41025 -28.86931 -26.64712 -25.38727 -23.64047 -22.40212 -20.97228 -18.82222 -18.51242 -18.40673 -17.26033 -16.83611 -16.52350 -15.67459 -15.49727 -14.92461 -14.40352 -14.28087 -13.95919 -13.92728 -13.65261 -13.63671 -13.61016 -13.57948 -13.01461 -12.69094 -12.59974 -12.20507 -12.04181 -11.81651 -11.26945 -11.10308 -10.99154 -10.93147 -10.46927 -10.29681 -9.86482 -9.41986 -9.39437 -9.03443 -8.69569 -8.35476 -6.45317 -4.54723 0.83836 1.16285 2.46382 3.08554 3.11214 3.20914 3.28018 3.44112 3.59515 3.77189 3.91456 4.15075 4.48260 4.58720 4.81618 4.86549 4.91974 5.15232 5.19542 5.42817 5.60693 5.77320 6.12862 6.22071 6.27417 6.75017 7.00147 7.13775 7.42442 7.66023 7.89892 8.31637 8.61839 9.12537 10.61635 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.005427 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.623238 B = 5158.043854 C = 5810.406411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.214 3.786 3 C -0.246 4.246 4 C 0.129 3.871 5 C 0.523 3.477 6 F -0.170 7.170 7 F -0.152 7.152 8 F -0.173 7.173 9 N -0.501 5.501 10 C 0.531 3.469 11 O -0.275 6.275 12 C 0.213 3.787 13 H 0.071 0.929 14 C -0.527 4.527 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.919 3.081 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.033 4.033 23 Cl -0.233 7.233 24 N -0.515 5.515 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.273 0.727 30 H 0.137 0.863 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 8.789 -1.179 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.066 3.934 3 C -0.270 4.270 4 C -0.022 4.022 5 C 0.467 3.533 6 F -0.151 7.151 7 F -0.133 7.133 8 F -0.154 7.154 9 N -0.230 5.230 10 C 0.231 3.769 11 O -0.175 6.175 12 C 0.158 3.842 13 H 0.089 0.911 14 C -0.565 4.565 15 H 0.096 0.904 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.745 3.255 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.096 4.096 23 Cl -0.207 7.207 24 N -0.243 5.243 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.171 0.829 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.047 7.685 -1.257 12.712 hybrid contribution 0.468 0.446 0.253 0.694 sum -9.579 8.131 -1.003 12.605 Atomic orbital electron populations 1.20781 0.86955 1.04293 1.03939 1.21481 0.97385 0.86364 0.88206 1.22084 0.93825 1.01419 1.09663 1.21003 0.91448 0.92308 0.97413 1.17844 0.78423 0.82722 0.74313 1.93232 1.94418 1.91679 1.35781 1.93308 1.44938 1.94581 1.80465 1.93186 1.78227 1.62856 1.81170 1.67877 1.40874 0.97564 1.16732 1.20793 0.85318 0.85161 0.85640 1.86251 1.26252 1.21271 1.83705 1.20773 0.69779 1.01281 0.92318 0.91146 1.21011 0.91965 1.06696 1.36802 0.90371 1.24968 0.96123 0.97492 0.95209 1.69830 1.03884 1.34297 1.43940 0.86085 0.78989 0.81238 0.79183 1.19232 1.20427 1.20421 1.25637 1.06068 0.83149 0.94719 1.98640 1.92907 1.45463 1.83726 1.67496 1.07033 1.30656 1.19096 0.89334 0.89812 0.89524 0.82892 0.91725 0.84566 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.22 36.01 0.37 -0.55 16 2 C 0.21 3.06 6.82 -82.26 -0.56 2.50 16 3 C -0.25 -3.40 9.20 -39.32 -0.36 -3.76 16 4 C 0.13 2.22 6.32 -82.26 -0.52 1.70 16 5 C 0.52 8.32 3.45 36.01 0.12 8.44 16 6 F -0.17 -2.65 17.30 2.25 0.04 -2.61 16 7 F -0.15 -2.78 17.07 2.25 0.04 -2.74 16 8 F -0.17 -2.34 16.53 2.25 0.04 -2.31 16 9 N -0.50 -10.41 6.03 -10.95 -0.07 -10.47 16 10 C 0.53 11.42 7.64 -91.25 -0.70 10.72 16 11 O -0.28 -6.63 9.81 -18.05 -0.18 -6.81 16 12 C 0.21 5.36 2.25 -27.88 -0.06 5.30 16 13 H 0.07 1.92 6.95 -51.93 -0.36 1.56 16 14 C -0.53 -13.87 8.89 -34.44 -0.31 -14.17 16 15 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 16 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 17 N -0.88 -23.28 11.29 55.43 0.63 -22.65 16 18 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.03 -0.78 6.17 37.16 0.23 -0.55 16 23 Cl -0.23 -5.09 25.91 -51.86 -1.34 -6.43 16 24 N -0.52 -9.65 10.40 -10.95 -0.11 -9.77 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.15 1.52 7.68 -52.48 -0.40 1.12 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.14 3.42 5.95 -51.93 -0.31 3.11 16 31 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -28.20 300.67 -5.64 -33.83 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -2.31 Total: -0.73 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -1.88 Total: 11.23 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.45 Total: -42.89 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.81 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.34 Total: -6.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.20 -5.64 -33.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226174267.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.828 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds