Wall clock time and date at job start Tue Mar 31 2020 09:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38613 * 120.40886 * 2 1 4 4 C 1.38569 * 118.52071 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.41370 * 179.97438 * 4 3 2 6 6 F 1.39895 * 109.47106 * 90.00126 * 5 4 3 7 7 F 1.39895 * 109.47279 * 210.00325 * 5 4 3 8 8 F 1.39894 * 109.46979 * 330.00192 * 5 4 3 9 9 N 1.32319 * 119.17791 * 359.74996 * 4 3 2 10 10 C 1.32309 * 120.75424 * 0.50751 * 9 4 3 11 11 O 1.35453 * 119.19275 * 179.75864 * 10 9 4 12 12 C 1.42905 * 117.00184 * 359.72779 * 11 10 9 13 13 H 1.09004 * 109.47054 * 29.99789 * 12 11 10 14 14 C 1.50703 * 109.47264 * 149.99823 * 12 11 10 15 15 H 1.07998 * 119.99574 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 12 11 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46716 * 120.00463 * 18 16 14 21 21 H 1.48500 * 109.46999 * 240.00161 * 18 16 14 22 22 C 1.53002 * 109.47079 * 270.00091 * 12 11 10 23 23 Cl 1.80300 * 109.47084 * 64.99764 * 22 12 11 24 24 N 1.32281 * 120.41709 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47526 * 269.97835 * 1 2 3 26 26 H 1.08994 * 109.47496 * 29.98379 * 1 2 3 27 27 H 1.09009 * 109.46825 * 149.98131 * 1 2 3 28 28 H 1.08003 * 120.74476 * 359.97438 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 30 30 H 1.08997 * 109.47011 * 184.99710 * 22 12 11 31 31 H 1.09005 * 109.46847 * 304.99836 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1954 0.0000 4 6 3.5936 1.1498 -0.0005 5 6 4.3989 2.4236 -0.0011 6 9 4.6486 2.8180 1.3176 7 9 5.6133 2.2073 -0.6611 8 9 3.6823 3.4280 -0.6605 9 7 4.2002 -0.0261 0.0040 10 6 3.5000 -1.1487 -0.0011 11 8 4.1536 -2.3351 -0.0012 12 6 5.5820 -2.2889 -0.0017 13 1 5.9166 -1.3875 0.5118 14 6 6.1241 -3.5024 0.7087 15 1 5.4457 -4.2353 1.1199 16 6 7.4860 -3.6769 0.8336 17 7 8.3120 -2.7841 0.3333 18 14 8.1580 -5.1807 1.7148 19 1 7.0300 -6.0255 2.1825 20 1 9.0078 -5.9627 0.7813 21 1 8.9705 -4.7494 2.8806 22 6 6.0911 -2.2726 -1.4444 23 17 5.5642 -0.7484 -2.2505 24 7 2.1767 -1.1407 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6876 2.1415 -0.0004 29 1 9.2702 -2.9067 0.4216 30 1 7.1797 -2.3270 -1.4462 31 1 5.6837 -3.1282 -1.9832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226174267.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:06 Heat of formation + Delta-G solvation = -162.836767 kcal Electronic energy + Delta-G solvation = -24077.511007 eV Core-core repulsion = 19777.227473 eV Total energy + Delta-G solvation = -4300.283534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.30560 -48.83405 -48.74931 -42.43030 -39.65215 -36.63895 -35.80066 -35.48995 -33.47215 -31.26823 -29.97635 -27.80311 -27.35240 -25.13782 -23.77287 -22.58851 -20.21501 -19.84943 -19.68711 -18.82292 -18.50384 -18.06472 -17.20644 -16.79319 -16.66264 -15.66204 -15.56462 -15.38606 -15.30063 -15.19629 -14.94655 -14.90738 -14.88652 -14.46747 -13.97552 -13.88241 -13.66698 -13.53545 -13.10819 -13.06726 -12.89440 -12.67316 -12.31839 -12.15610 -11.71729 -11.61566 -11.22907 -11.09899 -10.74049 -10.34712 -9.89769 -8.40626 -6.58740 -0.47262 -0.10111 1.17830 1.38222 1.41189 1.53157 1.56743 1.70683 2.29299 2.35730 2.42247 2.67979 2.93009 3.21834 3.35522 3.52165 3.68303 3.97578 4.17426 4.29866 4.34068 4.72617 4.78346 4.82891 4.93446 5.18747 5.31557 5.45641 5.66524 5.73350 6.23517 6.51236 6.94723 7.14393 8.66614 Molecular weight = 310.04amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.005427 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.623238 B = 5158.043854 C = 5810.406411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.213 3.787 3 C -0.216 4.216 4 C 0.102 3.898 5 C 0.529 3.471 6 F -0.169 7.169 7 F -0.170 7.170 8 F -0.155 7.155 9 N -0.535 5.535 10 C 0.505 3.495 11 O -0.299 6.299 12 C 0.225 3.775 13 H 0.040 0.960 14 C -0.553 4.553 15 H 0.069 0.931 16 C 0.028 3.972 17 N -0.907 5.907 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.274 1.274 22 C -0.023 4.023 23 Cl -0.217 7.217 24 N -0.532 5.532 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.202 0.798 29 H 0.277 0.723 30 H 0.120 0.880 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 9.734 -1.059 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 C -0.239 4.239 4 C -0.046 4.046 5 C 0.473 3.527 6 F -0.150 7.150 7 F -0.151 7.151 8 F -0.136 7.136 9 N -0.265 5.265 10 C 0.203 3.797 11 O -0.200 6.200 12 C 0.170 3.830 13 H 0.058 0.942 14 C -0.590 4.590 15 H 0.087 0.913 16 C -0.174 4.174 17 N -0.543 5.543 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.086 4.086 23 Cl -0.191 7.191 24 N -0.261 5.261 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.104 0.896 28 H 0.219 0.781 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.995 8.688 -1.146 14.855 hybrid contribution 0.876 0.343 0.206 0.963 sum -11.118 9.031 -0.940 14.355 Atomic orbital electron populations 1.21032 0.82584 1.06140 1.05785 1.22531 0.99750 0.85226 0.85966 1.22650 0.92356 1.03333 1.05585 1.21397 0.93163 0.91589 0.98442 1.17719 0.77823 0.82865 0.74289 1.93232 1.94406 1.91640 1.35752 1.93268 1.46233 1.94767 1.80878 1.93219 1.77617 1.61948 1.80792 1.67720 1.42052 0.98478 1.18210 1.20824 0.86184 0.84655 0.87995 1.86141 1.25366 1.23442 1.85069 1.20374 0.70821 0.99363 0.92464 0.94200 1.21229 0.92610 1.07242 1.37964 0.91285 1.25773 0.96001 1.00102 0.95510 1.69924 1.04258 1.35728 1.44416 0.85112 0.78252 0.77814 0.78175 1.19069 1.19351 1.19939 1.25313 1.04803 0.84059 0.94462 1.98629 1.92773 1.44425 1.83290 1.67565 1.05845 1.33044 1.19597 0.87149 0.86051 0.89583 0.78137 0.91323 0.86247 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.22 71.24 0.73 -0.61 16 2 C 0.21 5.50 6.82 42.58 0.29 5.79 16 3 C -0.22 -5.27 9.20 22.44 0.21 -5.06 16 4 C 0.10 3.40 6.32 42.57 0.27 3.67 16 5 C 0.53 16.23 3.45 71.24 0.25 16.48 16 6 F -0.17 -5.12 17.30 44.97 0.78 -4.34 16 7 F -0.17 -6.25 17.07 44.97 0.77 -5.48 16 8 F -0.15 -3.78 16.53 44.97 0.74 -3.04 16 9 N -0.53 -22.55 6.03 -301.51 -1.82 -24.37 16 10 C 0.50 22.14 7.64 180.57 1.38 23.52 16 11 O -0.30 -15.02 9.81 -87.50 -0.86 -15.88 16 12 C 0.23 11.83 2.25 29.85 0.07 11.90 16 13 H 0.04 2.31 6.95 -2.38 -0.02 2.29 16 14 C -0.55 -30.16 8.89 25.60 0.23 -29.93 16 15 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 16 C 0.03 1.45 5.29 84.65 0.45 1.90 16 17 N -0.91 -48.87 11.29 21.45 0.24 -48.63 16 18 Si 0.98 41.17 29.54 68.60 2.03 43.20 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 C -0.02 -1.14 6.17 71.98 0.44 -0.69 16 23 Cl -0.22 -9.66 25.91 -2.72 -0.07 -9.73 16 24 N -0.53 -19.64 10.40 -301.49 -3.14 -22.78 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.12 0.79 8.09 -2.39 -0.02 0.77 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.20 2.86 7.68 -2.91 -0.02 2.83 16 29 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.12 6.24 5.95 -2.39 -0.01 6.22 16 31 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 Total: -1.00 -64.17 300.67 4.18 -59.99 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.20 Total: 4.10 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 4.31 Total: 26.96 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.71 Total: -95.78 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.86 Total: -15.88 kcal Atomic # 9 Polarization: -15.16 SS G_CDS: 2.29 Total: -12.87 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 17 Polarization: -9.66 SS G_CDS: -0.07 Total: -9.73 kcal Total: -64.17 4.18 -59.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226174267.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.842 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds