Wall clock time and date at job start Tue Mar 31 2020 09:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47231 * 240.00420 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47260 * 119.99845 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 N 1.30269 * 126.28137 * 90.02448 * 11 10 9 13 13 N 1.28667 * 109.37908 * 179.97438 * 12 11 10 14 14 C 1.30271 * 109.38447 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.28485 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.46834 * 90.02628 * 15 14 13 17 17 C 1.35959 * 116.99415 * 179.97438 * 16 15 14 18 18 C 1.38662 * 120.06553 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.96694 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.09679 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.12456 * 0.02562 * 20 19 18 22 22 C 1.38329 * 120.03203 * 359.69892 * 21 20 19 23 23 F 1.35094 * 120.05003 * 180.27735 * 22 21 20 24 24 O 1.34365 * 107.43435 * 359.75587 * 14 13 12 25 25 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 1.09006 * 109.47045 * 210.02161 * 15 14 13 29 29 H 1.08995 * 109.47267 * 330.02524 * 15 14 13 30 30 H 1.07998 * 120.01525 * 359.97438 * 18 17 16 31 31 H 1.07997 * 119.94926 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.93703 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.98199 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 7 1.7170 -6.0239 -1.0536 13 7 1.2858 -7.1773 -0.6802 14 6 1.2659 -7.2309 0.6213 15 6 0.8268 -8.4041 1.4590 16 8 1.9500 -9.2470 1.7240 17 6 1.7241 -10.3585 2.4737 18 6 0.4485 -10.6321 2.9437 19 6 0.2211 -11.7626 3.7050 20 6 1.2639 -12.6214 3.9996 21 6 2.5375 -12.3519 3.5339 22 6 2.7699 -11.2247 2.7665 23 9 4.0131 -10.9639 2.3066 24 8 1.7134 -6.0498 1.0797 25 1 -0.4850 0.8401 0.0004 26 1 3.1238 -3.7309 -0.8925 27 1 3.1252 -3.7317 0.8875 28 1 0.4129 -8.0435 2.4007 29 1 0.0665 -8.9703 0.9211 30 1 -0.3668 -9.9619 2.7147 31 1 -0.7725 -11.9756 4.0706 32 1 1.0833 -13.5040 4.5952 33 1 3.3503 -13.0245 3.7650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322130421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:47 Heat of formation + Delta-G solvation = -13.214182 kcal Electronic energy + Delta-G solvation = -21248.264620 eV Core-core repulsion = 17510.742444 eV Total energy + Delta-G solvation = -3737.522175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.06402 -44.08882 -40.46655 -37.96142 -36.02228 -33.14971 -32.59946 -31.16063 -30.77384 -29.29732 -26.81778 -25.62758 -23.60198 -22.91878 -22.54659 -22.03957 -19.03646 -18.03148 -17.74258 -17.27909 -17.06530 -16.78613 -16.42456 -15.53809 -15.41893 -15.26303 -14.94829 -14.80955 -14.55138 -14.16471 -13.52918 -13.17787 -12.92933 -12.87843 -12.78564 -12.24860 -12.15872 -11.74792 -11.68413 -11.66598 -11.22055 -11.13315 -11.03566 -10.82809 -10.27813 -9.40505 -9.33863 -9.21366 -8.66206 -8.60155 -6.79580 -6.39574 -4.15102 0.67550 0.79697 1.00558 1.96839 2.41161 2.91118 3.12934 3.15484 3.16513 3.21268 3.34544 3.73167 3.86059 4.03782 4.28592 4.31649 4.35164 4.52258 4.71746 4.78106 4.78897 4.98300 5.03748 5.15462 5.34535 5.47641 5.49171 5.58723 5.60630 5.72107 5.81992 5.92476 6.03469 6.15324 6.76546 7.44484 8.18872 8.41823 9.06231 10.68394 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002297 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.343065 B =12186.709115 C =12306.496687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.080 0.920 9 S -0.082 6.082 10 C -0.043 4.043 11 C 0.228 3.772 12 N -0.286 5.286 13 N -0.251 5.251 14 C 0.130 3.870 15 C 0.168 3.832 16 O -0.302 6.302 17 C 0.101 3.899 18 C -0.182 4.182 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.116 4.116 22 C 0.073 3.927 23 F -0.130 7.130 24 O -0.211 6.211 25 H 0.272 0.728 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -23.410 9.316 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.675 4.675 8 H 0.098 0.902 9 S 0.144 5.856 10 C -0.191 4.191 11 C 0.019 3.981 12 N -0.134 5.134 13 N -0.101 5.101 14 C -0.082 4.082 15 C 0.092 3.908 16 O -0.215 6.215 17 C 0.055 3.945 18 C -0.201 4.201 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.135 4.135 22 C 0.053 3.947 23 F -0.109 7.109 24 O -0.090 6.090 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.409 -23.743 7.996 25.056 hybrid contribution 1.945 1.718 1.138 2.834 sum 1.536 -22.025 9.135 23.893 Atomic orbital electron populations 1.69986 1.06038 1.28012 1.46162 1.25034 0.95153 0.99272 0.94049 0.86107 0.79175 0.80538 0.79057 1.19650 1.20698 1.19732 1.22663 0.94856 0.89953 1.60066 0.90156 1.85174 1.05156 0.98309 1.96987 1.22044 1.04459 0.85472 1.07109 1.27632 0.95293 0.96355 0.78868 1.74524 1.15940 0.98058 1.24877 1.74336 1.13850 1.13184 1.08748 1.26716 1.02786 0.87239 0.91442 1.20675 0.87134 0.84623 0.98387 1.86175 1.35456 1.32853 1.67015 1.18970 0.93674 0.87489 0.94356 1.21249 0.95081 1.00872 1.02881 1.21053 0.99766 0.93240 0.96520 1.20978 0.91744 1.00587 1.01363 1.21063 0.99066 0.95711 0.97665 1.17033 0.79147 0.96352 1.02191 1.91531 1.38298 1.93894 1.87170 1.84792 1.62518 1.23286 1.38411 0.91846 0.86588 0.88093 0.88131 0.86779 0.84053 0.84724 0.84687 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.92 13.22 55.49 0.73 -24.19 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.53 -14.24 9.50 30.94 0.29 -13.95 16 8 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 9 S -0.08 -2.08 21.42 -107.50 -2.30 -4.39 16 10 C -0.04 -0.85 6.30 36.01 0.23 -0.62 16 11 C 0.23 4.46 7.73 -12.94 -0.10 4.36 16 12 N -0.29 -5.81 12.22 32.55 0.40 -5.41 16 13 N -0.25 -4.64 12.22 32.55 0.40 -4.24 16 14 C 0.13 2.07 8.11 -12.94 -0.10 1.97 16 15 C 0.17 1.81 5.36 36.01 0.19 2.00 16 16 O -0.30 -3.82 9.99 -19.61 -0.20 -4.02 16 17 C 0.10 1.06 6.69 -39.17 -0.26 0.80 16 18 C -0.18 -1.34 9.04 -39.44 -0.36 -1.70 16 19 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 20 C -0.13 -0.74 10.04 -39.56 -0.40 -1.14 16 21 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16 22 C 0.07 0.77 7.31 -39.30 -0.29 0.48 16 23 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 24 O -0.21 -3.80 10.87 5.37 0.06 -3.75 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 27 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 28 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 29 H 0.11 0.91 7.66 -51.93 -0.40 0.51 16 30 H 0.14 0.73 6.30 -52.49 -0.33 0.40 16 31 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -33.09 321.77 -5.52 -38.61 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -2.78 Total: -3.37 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.68 Total: -8.03 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 1.53 Total: -33.84 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.14 Total: -7.77 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.30 Total: -4.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.09 -5.52 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322130421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.393 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds