Wall clock time and date at job start Tue Mar 31 2020 09:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47231 * 240.00420 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47260 * 119.99845 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 N 1.30269 * 126.28137 * 90.02448 * 11 10 9 13 13 N 1.28667 * 109.37908 * 179.97438 * 12 11 10 14 14 C 1.30271 * 109.38447 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.28485 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.46834 * 90.02628 * 15 14 13 17 17 C 1.35959 * 116.99415 * 179.97438 * 16 15 14 18 18 C 1.38662 * 120.06553 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.96694 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.09679 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.12456 * 0.02562 * 20 19 18 22 22 C 1.38329 * 120.03203 * 359.69892 * 21 20 19 23 23 F 1.35094 * 120.05003 * 180.27735 * 22 21 20 24 24 O 1.34365 * 107.43435 * 359.75587 * 14 13 12 25 25 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 1.09006 * 109.47045 * 210.02161 * 15 14 13 29 29 H 1.08995 * 109.47267 * 330.02524 * 15 14 13 30 30 H 1.07998 * 120.01525 * 359.97438 * 18 17 16 31 31 H 1.07997 * 119.94926 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.93703 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.98199 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 7 1.7170 -6.0239 -1.0536 13 7 1.2858 -7.1773 -0.6802 14 6 1.2659 -7.2309 0.6213 15 6 0.8268 -8.4041 1.4590 16 8 1.9500 -9.2470 1.7240 17 6 1.7241 -10.3585 2.4737 18 6 0.4485 -10.6321 2.9437 19 6 0.2211 -11.7626 3.7050 20 6 1.2639 -12.6214 3.9996 21 6 2.5375 -12.3519 3.5339 22 6 2.7699 -11.2247 2.7665 23 9 4.0131 -10.9639 2.3066 24 8 1.7134 -6.0498 1.0797 25 1 -0.4850 0.8401 0.0004 26 1 3.1238 -3.7309 -0.8925 27 1 3.1252 -3.7317 0.8875 28 1 0.4129 -8.0435 2.4007 29 1 0.0665 -8.9703 0.9211 30 1 -0.3668 -9.9619 2.7147 31 1 -0.7725 -11.9756 4.0706 32 1 1.0833 -13.5040 4.5952 33 1 3.3503 -13.0245 3.7650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322130421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:46 Heat of formation + Delta-G solvation = -37.925551 kcal Electronic energy + Delta-G solvation = -21249.336185 eV Core-core repulsion = 17510.742444 eV Total energy + Delta-G solvation = -3738.593741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88221 -45.51736 -41.17145 -38.60959 -37.47077 -34.69087 -34.46514 -31.78359 -31.63794 -30.27797 -28.17415 -27.57597 -24.54602 -23.97409 -23.53505 -23.07639 -19.94987 -19.78562 -18.79388 -18.52458 -17.99345 -17.73650 -17.35235 -16.93095 -16.51981 -16.38949 -16.21060 -15.90817 -15.67713 -15.39025 -14.71170 -14.58796 -14.12766 -13.80247 -13.70076 -13.50883 -13.27076 -13.16771 -12.89956 -12.84696 -12.69645 -12.46337 -12.22628 -12.14582 -11.98855 -11.17764 -10.97881 -10.43670 -9.95868 -9.31727 -8.82625 -8.42594 -6.23582 -0.35996 0.11847 0.22349 0.62227 1.00464 1.36004 1.44385 1.50859 1.62517 1.97994 2.19065 2.58549 2.59620 2.93830 3.05507 3.21679 3.23889 3.50945 3.70989 3.77476 3.96847 4.01979 4.12237 4.24641 4.28220 4.31275 4.33855 4.46985 4.48724 4.95173 5.08117 5.25990 5.38192 5.42999 5.60730 6.10562 6.14208 6.97677 6.99943 8.66722 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002297 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.343065 B =12186.709115 C =12306.496687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.090 0.910 9 S -0.145 6.145 10 C -0.019 4.019 11 C 0.214 3.786 12 N -0.304 5.304 13 N -0.280 5.280 14 C 0.152 3.848 15 C 0.166 3.834 16 O -0.333 6.333 17 C 0.075 3.925 18 C -0.181 4.181 19 C -0.081 4.081 20 C -0.121 4.121 21 C -0.117 4.117 22 C 0.033 3.967 23 F -0.155 7.155 24 O -0.216 6.216 25 H 0.274 0.726 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -24.717 10.941 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.689 4.689 8 H 0.108 0.892 9 S 0.081 5.919 10 C -0.167 4.167 11 C 0.003 3.997 12 N -0.153 5.153 13 N -0.129 5.129 14 C -0.060 4.060 15 C 0.090 3.910 16 O -0.247 6.247 17 C 0.030 3.970 18 C -0.200 4.200 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.136 4.136 22 C 0.013 3.987 23 F -0.134 7.134 24 O -0.095 6.095 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.815 -25.085 9.617 26.877 hybrid contribution 2.017 1.857 0.724 2.835 sum 1.202 -23.228 10.340 25.454 Atomic orbital electron populations 1.70127 1.07826 1.29035 1.47380 1.26097 0.96028 1.03201 0.93351 0.84979 0.77820 0.75526 0.79575 1.18765 1.20292 1.18565 1.23056 0.95452 0.90579 1.59807 0.89224 1.85183 1.09328 1.00139 1.97205 1.21813 1.02141 0.84281 1.08477 1.27399 0.96593 0.96423 0.79268 1.74452 1.16158 0.98916 1.25739 1.74287 1.15653 1.12729 1.10206 1.27839 0.99361 0.87458 0.91368 1.21141 0.87018 0.83266 0.99545 1.86084 1.36379 1.34024 1.68179 1.19244 0.95045 0.87176 0.95536 1.21585 0.94226 1.01796 1.02368 1.21531 1.01307 0.92083 0.94999 1.21438 0.90746 1.01314 1.00340 1.21361 1.00632 0.94799 0.96805 1.17594 0.78564 0.98224 1.04328 1.91454 1.39879 1.94268 1.87813 1.84802 1.62644 1.23986 1.38068 0.91692 0.85647 0.86261 0.84960 0.83787 0.81771 0.81384 0.81430 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 13.22 21.65 0.29 -52.61 16 2 C 0.02 1.02 5.49 84.86 0.47 1.49 16 3 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.54 -29.35 9.50 67.95 0.65 -28.71 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.15 -7.49 21.42 -56.49 -1.21 -8.70 16 10 C -0.02 -0.74 6.30 71.24 0.45 -0.29 16 11 C 0.21 8.43 7.73 88.34 0.68 9.11 16 12 N -0.30 -12.55 12.22 -165.50 -2.02 -14.57 16 13 N -0.28 -10.39 12.22 -165.50 -2.02 -12.42 16 14 C 0.15 4.77 8.11 88.34 0.72 5.48 16 15 C 0.17 3.28 5.36 71.24 0.38 3.66 16 16 O -0.33 -8.27 9.99 -93.08 -0.93 -9.20 16 17 C 0.08 1.50 6.69 22.53 0.15 1.65 16 18 C -0.18 -2.16 9.04 22.36 0.20 -1.96 16 19 C -0.08 -0.62 10.04 22.26 0.22 -0.40 16 20 C -0.12 -0.96 10.04 22.28 0.22 -0.74 16 21 C -0.12 -1.56 10.02 22.30 0.22 -1.34 16 22 C 0.03 0.69 7.31 22.45 0.16 0.85 16 23 F -0.16 -4.20 17.11 44.97 0.77 -3.43 16 24 O -0.22 -7.73 10.87 -3.70 -0.04 -7.77 16 25 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 26 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 27 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 28 H 0.13 1.74 7.66 -2.38 -0.02 1.73 16 29 H 0.14 1.94 7.66 -2.39 -0.02 1.92 16 30 H 0.16 1.06 6.30 -2.91 -0.02 1.04 16 31 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 32 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -74.67 321.77 2.55 -72.12 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.16 Total: 3.88 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.53 Total: -11.19 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.76 Total: -79.60 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.97 Total: -16.97 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.43 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.21 Total: -8.70 kcal Total: -74.67 2.55 -72.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322130421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.190 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds