Wall clock time and date at job start Tue Mar 31 2020 09:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 S 1.80998 * 109.47161 * 180.02562 * 12 9 7 14 14 C 1.76208 * 99.99889 * 179.97438 * 13 12 9 15 15 N 1.31282 * 126.28260 * 0.02562 * 14 13 12 16 16 N 1.28653 * 109.43816 * 179.97438 * 15 14 13 17 17 C 1.31078 * 109.42189 * 0.02562 * 16 15 14 18 18 C 1.47740 * 126.29781 * 179.97438 * 17 16 15 19 19 C 1.39621 * 120.11786 * 179.74484 * 18 17 16 20 20 C 1.37899 * 119.87354 * 179.79452 * 19 18 17 21 21 C 1.38588 * 120.12475 * 0.49008 * 20 19 18 22 22 F 1.35104 * 119.88019 * 179.76735 * 21 20 19 23 23 C 1.38590 * 120.24715 * 359.74277 * 21 20 19 24 24 C 1.37903 * 120.12069 * 0.02562 * 23 21 20 25 25 O 1.34672 * 126.28195 * 179.71017 * 14 13 12 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 28 28 H 1.09004 * 109.47066 * 299.99797 * 12 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 12 9 7 30 30 H 1.08002 * 120.06232 * 0.02562 * 19 18 17 31 31 H 1.08004 * 119.94175 * 180.26014 * 20 19 18 32 32 H 1.08004 * 119.94319 * 179.97438 * 23 21 20 33 33 H 1.08001 * 120.06318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 8 0.4294 -2.5696 -1.1725 12 6 2.2451 -3.6622 -0.0104 13 16 1.3400 -5.2296 -0.0183 14 6 2.6898 -6.3623 -0.0238 15 7 3.9652 -6.0510 -0.0218 16 7 4.6688 -7.1281 -0.0267 17 6 3.8722 -8.1690 -0.0327 18 6 4.2863 -9.5872 -0.0402 19 6 3.3234 -10.5982 -0.0407 20 6 3.7155 -11.9202 -0.0519 21 6 5.0625 -12.2462 -0.0525 22 9 5.4412 -13.5431 -0.0588 23 6 6.0226 -11.2468 -0.0471 24 6 5.6419 -9.9214 -0.0406 25 8 2.6024 -7.7061 -0.0250 26 1 -0.4850 0.8401 -0.0004 27 1 0.9216 -2.5207 -2.0034 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 2.2734 -10.3453 -0.0360 31 1 2.9716 -12.7032 -0.0566 32 1 7.0710 -11.5064 -0.0471 33 1 6.3909 -9.1433 -0.0368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434470547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:30 Heat of formation + Delta-G solvation = -30.053003 kcal Electronic energy + Delta-G solvation = -21192.290396 eV Core-core repulsion = 17454.038035 eV Total energy + Delta-G solvation = -3738.252361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.38785 -43.98353 -39.40575 -36.24298 -36.03765 -32.85360 -32.30206 -31.74115 -30.15051 -29.46862 -25.60069 -24.67747 -24.32517 -22.95501 -22.04862 -21.21871 -18.69023 -18.09489 -17.42795 -17.39807 -17.11010 -16.72426 -16.06106 -15.80379 -14.78087 -14.75592 -14.53113 -14.35891 -14.11786 -14.03685 -13.65778 -13.14481 -13.10556 -12.66882 -12.46432 -11.97950 -11.83335 -11.59453 -11.42582 -11.28385 -11.00086 -10.97949 -10.67836 -10.39779 -10.09523 -9.69255 -9.36527 -9.07460 -8.74785 -8.48890 -7.55760 -6.17678 -4.38027 0.03907 0.70014 0.78566 1.31466 2.31205 2.36277 2.64442 3.14878 3.21076 3.28589 3.31918 3.69993 3.89279 4.26302 4.28265 4.32737 4.67851 4.73315 4.97861 5.09638 5.10839 5.15246 5.37684 5.44599 5.56789 5.63884 5.70109 5.79891 5.86337 6.00435 6.25692 6.48816 7.36385 7.66290 7.88982 8.15807 8.62912 9.12870 9.38079 10.86368 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.045638 B = 0.002312 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.374722 B =12105.804707 C =12630.814960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.569 4.569 8 H 0.063 0.937 9 C 0.245 3.755 10 H 0.070 0.930 11 O -0.560 6.560 12 C -0.129 4.129 13 S 0.069 5.931 14 C 0.148 3.852 15 N -0.293 5.293 16 N -0.258 5.258 17 C 0.182 3.818 18 C -0.021 4.021 19 C -0.058 4.058 20 C -0.153 4.153 21 C 0.117 3.883 22 F -0.134 7.134 23 C -0.153 4.153 24 C -0.042 4.042 25 O -0.206 6.206 26 H 0.264 0.736 27 H 0.351 0.649 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -22.156 -0.318 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.081 0.919 9 C 0.185 3.815 10 H 0.088 0.912 11 O -0.363 6.363 12 C -0.278 4.278 13 S 0.301 5.699 14 C -0.167 4.167 15 N -0.145 5.145 16 N -0.106 5.106 17 C -0.030 4.030 18 C -0.024 4.024 19 C -0.078 4.078 20 C -0.171 4.171 21 C 0.097 3.903 22 F -0.113 7.113 23 C -0.171 4.171 24 C -0.062 4.062 25 O -0.088 6.088 26 H 0.074 0.926 27 H 0.196 0.804 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.530 -21.585 0.156 22.552 hybrid contribution 1.309 0.246 -0.347 1.376 sum 7.839 -21.339 -0.191 22.734 Atomic orbital electron populations 1.70070 1.05984 1.26972 1.45978 1.25038 0.94813 0.99327 0.93444 0.86527 0.79911 0.82756 0.78390 1.20341 1.20964 1.19617 1.21445 0.93410 0.90039 1.56038 0.91905 1.19298 0.87469 0.87582 0.87155 0.91210 1.86598 1.38240 1.95976 1.15447 1.25237 1.03909 0.91751 1.06901 1.86561 0.99022 0.95598 1.88686 1.30822 1.01375 0.83339 1.01138 1.75014 0.99097 1.19979 1.20436 1.74398 1.27102 0.93955 1.15168 1.25189 0.77672 0.96369 1.03779 1.17230 0.94034 0.84580 1.06516 1.21158 1.00056 0.91002 0.95552 1.21064 0.94557 0.97366 1.04154 1.17923 0.93252 0.78414 1.00726 1.91533 1.92032 1.34222 1.93509 1.21098 1.00277 0.91599 1.04150 1.21069 0.94329 0.96290 0.94469 1.84999 1.31492 1.21130 1.71175 0.92618 0.80429 0.88953 0.88395 0.83842 0.83686 0.83533 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.95 12.83 55.43 0.71 -23.24 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.57 -14.63 8.76 -34.44 -0.30 -14.93 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.25 5.72 2.87 -27.88 -0.08 5.64 16 10 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 11 O -0.56 -13.19 12.31 -35.23 -0.43 -13.63 16 12 C -0.13 -2.49 4.86 37.16 0.18 -2.31 16 13 S 0.07 1.17 21.95 -107.50 -2.36 -1.19 16 14 C 0.15 2.53 8.53 52.53 0.45 2.98 16 15 N -0.29 -5.35 11.62 30.32 0.35 -5.00 16 16 N -0.26 -4.29 11.89 32.08 0.38 -3.91 16 17 C 0.18 2.61 7.98 -13.99 -0.11 2.50 16 18 C -0.02 -0.23 5.87 -104.98 -0.62 -0.84 16 19 C -0.06 -0.49 9.72 -39.19 -0.38 -0.87 16 20 C -0.15 -1.10 10.01 -39.58 -0.40 -1.50 16 21 C 0.12 0.92 7.30 -39.32 -0.29 0.63 16 22 F -0.13 -1.12 17.26 2.25 0.04 -1.09 16 23 C -0.15 -1.12 10.01 -39.57 -0.40 -1.51 16 24 C -0.04 -0.37 9.69 -39.19 -0.38 -0.75 16 25 O -0.21 -3.18 10.69 2.30 0.02 -3.16 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.35 7.29 9.04 45.56 0.41 7.71 16 28 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 29 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 30 H 0.14 1.08 7.93 -52.49 -0.42 0.66 16 31 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 33 H 0.15 1.26 7.86 -52.49 -0.41 0.85 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -29.70 321.85 -5.95 -35.65 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.07 Total: 4.36 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.42 Total: -8.91 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 1.45 Total: -32.15 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.41 Total: -16.78 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.36 Total: -1.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.70 -5.95 -35.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434470547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.593 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds