Wall clock time and date at job start Tue Mar 31 2020 09:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 S 1.80998 * 109.47161 * 180.02562 * 12 9 7 14 14 C 1.76208 * 99.99889 * 179.97438 * 13 12 9 15 15 N 1.31282 * 126.28260 * 0.02562 * 14 13 12 16 16 N 1.28653 * 109.43816 * 179.97438 * 15 14 13 17 17 C 1.31078 * 109.42189 * 0.02562 * 16 15 14 18 18 C 1.47740 * 126.29781 * 179.97438 * 17 16 15 19 19 C 1.39621 * 120.11786 * 179.74484 * 18 17 16 20 20 C 1.37899 * 119.87354 * 179.79452 * 19 18 17 21 21 C 1.38588 * 120.12475 * 0.49008 * 20 19 18 22 22 F 1.35104 * 119.88019 * 179.76735 * 21 20 19 23 23 C 1.38590 * 120.24715 * 359.74277 * 21 20 19 24 24 C 1.37903 * 120.12069 * 0.02562 * 23 21 20 25 25 O 1.34672 * 126.28195 * 179.71017 * 14 13 12 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 28 28 H 1.09004 * 109.47066 * 299.99797 * 12 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 12 9 7 30 30 H 1.08002 * 120.06232 * 0.02562 * 19 18 17 31 31 H 1.08004 * 119.94175 * 180.26014 * 20 19 18 32 32 H 1.08004 * 119.94319 * 179.97438 * 23 21 20 33 33 H 1.08001 * 120.06318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 8 0.4294 -2.5696 -1.1725 12 6 2.2451 -3.6622 -0.0104 13 16 1.3400 -5.2296 -0.0183 14 6 2.6898 -6.3623 -0.0238 15 7 3.9652 -6.0510 -0.0218 16 7 4.6688 -7.1281 -0.0267 17 6 3.8722 -8.1690 -0.0327 18 6 4.2863 -9.5872 -0.0402 19 6 3.3234 -10.5982 -0.0407 20 6 3.7155 -11.9202 -0.0519 21 6 5.0625 -12.2462 -0.0525 22 9 5.4412 -13.5431 -0.0588 23 6 6.0226 -11.2468 -0.0471 24 6 5.6419 -9.9214 -0.0406 25 8 2.6024 -7.7061 -0.0250 26 1 -0.4850 0.8401 -0.0004 27 1 0.9216 -2.5207 -2.0034 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 2.2734 -10.3453 -0.0360 31 1 2.9716 -12.7032 -0.0566 32 1 7.0710 -11.5064 -0.0471 33 1 6.3909 -9.1433 -0.0368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434470547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:29 Heat of formation + Delta-G solvation = -52.590655 kcal Electronic energy + Delta-G solvation = -21193.267702 eV Core-core repulsion = 17454.038035 eV Total energy + Delta-G solvation = -3739.229667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 310.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.03593 -45.22091 -40.08874 -37.98636 -37.40422 -34.30409 -33.82601 -32.37685 -31.77666 -30.59959 -27.46077 -25.80020 -25.36232 -23.76564 -23.17942 -22.79063 -19.86286 -19.28419 -18.83601 -18.65022 -18.15474 -17.52388 -16.86960 -16.71097 -16.69909 -16.32492 -16.12621 -15.58149 -15.42220 -14.70862 -14.47652 -14.31151 -13.89727 -13.85672 -13.76497 -13.48167 -13.34280 -13.17524 -12.90091 -12.78286 -12.55874 -12.15391 -12.07221 -11.83593 -11.73994 -11.19166 -10.74425 -10.38417 -10.30465 -9.92935 -8.86724 -8.18256 -6.44396 -0.85252 -0.55657 0.08989 0.23976 0.92106 1.15897 1.43021 1.44216 1.47517 1.55135 2.39445 2.43497 2.87250 3.07298 3.08996 3.56097 3.66386 3.73456 3.83186 4.01332 4.06059 4.10866 4.12114 4.20745 4.28749 4.68941 4.82155 4.85716 4.94232 5.00975 5.16658 5.46507 5.63302 5.64458 5.93733 6.64225 6.91344 7.27447 7.43520 8.86159 Molecular weight = 310.06amu Principal moments of inertia in cm(-1) A = 0.045638 B = 0.002312 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.374722 B =12105.804707 C =12630.814960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.581 4.581 8 H 0.064 0.936 9 C 0.248 3.752 10 H 0.043 0.957 11 O -0.571 6.571 12 C -0.119 4.119 13 S 0.093 5.907 14 C 0.136 3.864 15 N -0.313 5.313 16 N -0.290 5.290 17 C 0.207 3.793 18 C -0.052 4.052 19 C -0.052 4.052 20 C -0.146 4.146 21 C 0.120 3.880 22 F -0.135 7.135 23 C -0.146 4.146 24 C -0.040 4.040 25 O -0.205 6.205 26 H 0.264 0.736 27 H 0.363 0.637 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 -24.110 -0.524 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.621 4.621 8 H 0.083 0.917 9 C 0.187 3.813 10 H 0.061 0.939 11 O -0.376 6.376 12 C -0.268 4.268 13 S 0.324 5.676 14 C -0.180 4.180 15 N -0.166 5.166 16 N -0.136 5.136 17 C -0.005 4.005 18 C -0.054 4.054 19 C -0.072 4.072 20 C -0.165 4.165 21 C 0.100 3.900 22 F -0.113 7.113 23 C -0.165 4.165 24 C -0.059 4.059 25 O -0.087 6.087 26 H 0.073 0.927 27 H 0.209 0.791 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.628 -23.550 -0.055 24.755 hybrid contribution 1.043 0.552 -0.288 1.215 sum 8.672 -22.999 -0.344 24.582 Atomic orbital electron populations 1.70187 1.07492 1.27748 1.47552 1.25842 0.95524 1.02736 0.93129 0.85517 0.78664 0.78677 0.78492 1.19780 1.20832 1.19066 1.21820 0.93706 0.91384 1.55193 0.91736 1.19016 0.87358 0.88688 0.86207 0.93919 1.86538 1.38873 1.96096 1.16080 1.24760 1.02790 0.92345 1.06927 1.86347 0.97857 0.94033 1.89326 1.30612 1.01004 0.83985 1.02436 1.74939 0.99655 1.21218 1.20749 1.74350 1.27386 0.94155 1.17726 1.25929 0.76853 0.97443 1.00325 1.17432 0.95334 0.82953 1.09663 1.21283 1.00174 0.91038 0.94715 1.21297 0.94989 0.97308 1.02889 1.18105 0.93671 0.78398 0.99836 1.91542 1.92072 1.34322 1.93391 1.21300 1.01553 0.90636 1.02997 1.21136 0.93628 0.97099 0.94070 1.84995 1.32106 1.20338 1.71267 0.92655 0.79142 0.88711 0.88614 0.82922 0.81172 0.81155 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.79 12.83 21.45 0.28 -50.51 16 2 C 0.03 1.68 5.40 84.66 0.46 2.13 16 3 Si 0.96 41.73 29.54 68.60 2.03 43.75 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.58 -30.14 8.76 25.60 0.22 -29.91 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.25 11.76 2.87 29.85 0.09 11.85 16 10 H 0.04 2.25 8.14 -2.38 -0.02 2.23 16 11 O -0.57 -27.28 12.31 -148.98 -1.83 -29.11 16 12 C -0.12 -4.64 4.86 71.98 0.35 -4.29 16 13 S 0.09 3.16 21.95 -56.49 -1.24 1.92 16 14 C 0.14 4.62 8.53 130.33 1.11 5.73 16 15 N -0.31 -11.48 11.62 -171.88 -2.00 -13.48 16 16 N -0.29 -9.58 11.89 -166.15 -1.98 -11.56 16 17 C 0.21 5.77 7.98 87.32 0.70 6.46 16 18 C -0.05 -1.02 5.87 -20.10 -0.12 -1.14 16 19 C -0.05 -0.77 9.72 22.52 0.22 -0.55 16 20 C -0.15 -1.66 10.01 22.27 0.22 -1.44 16 21 C 0.12 1.51 7.30 22.44 0.16 1.68 16 22 F -0.13 -1.84 17.26 44.97 0.78 -1.06 16 23 C -0.15 -1.74 10.01 22.27 0.22 -1.52 16 24 C -0.04 -0.63 9.69 22.52 0.22 -0.41 16 25 O -0.21 -6.19 10.69 -14.68 -0.16 -6.35 16 26 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 27 H 0.36 15.17 9.04 -74.06 -0.67 14.50 16 28 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.15 1.95 7.93 -2.91 -0.02 1.92 16 31 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.15 2.37 7.86 -2.91 -0.02 2.34 16 Total: -1.00 -63.57 321.85 0.24 -63.33 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.51 Total: 14.49 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.85 Total: -11.41 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -3.70 Total: -75.55 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.99 Total: -35.46 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.78 Total: -1.06 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.24 Total: 1.92 kcal Total: -63.57 0.24 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434470547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.740 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds