Wall clock time and date at job start Tue Mar 31 2020 10:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48505 * 109.47197 * 270.00366 * 3 2 1 5 5 H 1.48501 * 109.47355 * 29.99767 * 3 2 1 6 6 H 1.48493 * 109.47438 * 150.00302 * 3 2 1 7 7 C 1.38669 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00120 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.35660 * 116.99733 * 185.05721 * 9 7 2 11 11 C 1.39035 * 119.94271 * 354.45007 * 10 9 7 12 12 C 1.37788 * 120.05883 * 179.97438 * 11 10 9 13 13 C 1.39523 * 119.93863 * 0.02562 * 12 11 10 14 14 C 1.48164 * 120.05811 * 180.02562 * 13 12 11 15 15 C 1.40472 * 119.32249 * 179.97438 * 14 13 12 16 16 C 1.36224 * 119.91349 * 179.97438 * 15 14 13 17 17 C 1.41081 * 118.39613 * 0.02562 * 16 15 14 18 18 N 1.33482 * 120.98515 * 179.97438 * 17 16 15 19 19 C 1.31098 * 121.36470 * 179.97438 * 18 17 16 20 20 C 1.39623 * 121.58557 * 0.04025 * 19 18 17 21 21 F 1.35099 * 120.03164 * 179.97438 * 20 19 18 22 22 C 1.36716 * 119.92658 * 359.97438 * 20 19 18 23 23 C 1.40900 * 118.23882 * 359.97438 * 22 20 19 24 24 N 1.31980 * 119.32034 * 359.97438 * 14 13 12 25 25 C 1.39528 * 119.88878 * 0.27171 * 13 12 11 26 26 C 1.37788 * 119.93401 * 359.42639 * 25 13 12 27 27 H 0.96996 * 120.00622 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97476 * 359.97438 * 11 10 9 29 29 H 1.07994 * 120.03124 * 180.02562 * 12 11 10 30 30 H 1.07994 * 120.04496 * 0.25739 * 15 14 13 31 31 H 1.07991 * 120.79936 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.20617 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.87915 * 180.02562 * 22 20 19 34 34 H 1.07998 * 120.03230 * 179.72380 * 25 13 12 35 35 H 1.08002 * 119.96756 * 180.27588 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0466 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5469 1.4404 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0698 -3.5038 0.1055 11 6 3.4584 -3.4354 0.0914 12 6 4.2072 -4.5870 0.1994 13 6 3.5707 -5.8225 0.3225 14 6 4.3733 -7.0624 0.4395 15 6 3.7164 -8.2979 0.5632 16 6 4.4425 -9.4455 0.6710 17 6 5.8502 -9.3528 0.6550 18 7 6.6119 -10.4441 0.7576 19 6 7.9205 -10.3666 0.7431 20 6 8.5793 -9.1417 0.6207 21 9 9.9295 -9.0982 0.6097 22 6 7.8564 -7.9864 0.5119 23 6 6.4503 -8.0758 0.5270 24 7 5.6906 -6.9833 0.4252 25 6 2.1770 -5.8889 0.3302 26 6 1.4330 -4.7337 0.2281 27 1 -0.4851 0.8400 -0.0004 28 1 3.9506 -2.4789 -0.0043 29 1 5.2857 -4.5334 0.1889 30 1 2.6373 -8.3385 0.5683 31 1 3.9524 -10.4030 0.7664 32 1 8.5030 -11.2722 0.8281 33 1 8.3501 -7.0306 0.4160 34 1 1.6819 -6.8444 0.4208 35 1 0.3542 -4.7841 0.2384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:50 Heat of formation + Delta-G solvation = 4.133717 kcal Electronic energy + Delta-G solvation = -22929.041981 eV Core-core repulsion = 19192.661210 eV Total energy + Delta-G solvation = -3736.380771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.13209 -42.23867 -40.83693 -39.27828 -37.78245 -34.96305 -34.40016 -32.74245 -32.25461 -31.59607 -29.82230 -27.51024 -25.92079 -25.25546 -24.04413 -23.26231 -22.46326 -20.41824 -19.68854 -19.18705 -18.68213 -18.59914 -17.17136 -17.02757 -16.72763 -16.39744 -16.01982 -15.88439 -15.74105 -15.54248 -15.33477 -14.98149 -14.56345 -14.28197 -14.14091 -14.01562 -13.92944 -13.57990 -13.43087 -12.98382 -12.68430 -12.54986 -12.37955 -12.14182 -11.79067 -11.73697 -11.22792 -10.89702 -10.24266 -10.16861 -9.89477 -9.87122 -8.77271 -8.52586 -6.18833 -1.04050 -0.65203 0.48112 0.58244 0.83712 1.35644 1.42812 1.52373 1.76331 2.14987 2.61547 2.71719 2.96381 3.04349 3.12864 3.21770 3.32263 3.40644 3.54672 3.69903 3.89822 3.98850 4.10989 4.18738 4.33665 4.47946 4.57216 4.62581 4.70325 4.79072 4.87424 4.97740 5.09830 5.19623 5.25165 5.42747 5.59349 5.63428 5.65788 5.97109 6.06630 6.50463 6.75925 6.92023 7.67782 8.69284 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.002633 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.822175 B =10631.277341 C =11728.299689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.016 4.016 3 Si 1.016 2.984 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.217 6.217 10 C 0.136 3.864 11 C -0.252 4.252 12 C -0.024 4.024 13 C -0.157 4.157 14 C 0.232 3.768 15 C -0.151 4.151 16 C -0.029 4.029 17 C 0.035 3.965 18 N -0.441 5.441 19 C 0.108 3.892 20 C 0.072 3.928 21 F -0.123 7.123 22 C -0.103 4.103 23 C 0.098 3.902 24 N -0.506 5.506 25 C -0.026 4.026 26 C -0.203 4.203 27 H 0.275 0.725 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.210 0.790 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -19.902 1.662 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.121 6.121 10 C 0.083 3.917 11 C -0.271 4.271 12 C -0.043 4.043 13 C -0.159 4.159 14 C 0.083 3.917 15 C -0.172 4.172 16 C -0.054 4.054 17 C -0.088 4.088 18 N -0.148 5.148 19 C -0.067 4.067 20 C 0.048 3.952 21 F -0.101 7.101 22 C -0.130 4.130 23 C -0.027 4.027 24 N -0.217 5.217 25 C -0.045 4.045 26 C -0.222 4.222 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.198 0.802 31 H 0.198 0.802 32 H 0.227 0.773 33 H 0.179 0.821 34 H 0.188 0.812 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.514 -19.720 1.645 23.413 hybrid contribution 0.593 1.406 -0.104 1.530 sum 13.107 -18.313 1.541 22.573 Atomic orbital electron populations 1.70149 1.07950 1.29118 1.47675 1.26562 0.96822 1.02666 0.95494 0.84613 0.77868 0.74631 0.79325 1.18764 1.19443 1.17788 1.21867 0.92656 0.81284 1.53393 0.87920 1.83916 1.36064 1.12681 1.79477 1.20139 0.91280 0.88208 0.92057 1.21186 0.93268 0.99783 1.12876 1.21049 0.99795 0.90797 0.92653 1.18277 0.92781 0.90926 1.13944 1.20121 0.88626 0.93110 0.89862 1.22220 1.03771 0.90760 1.00493 1.21531 0.90010 1.00790 0.93083 1.19954 0.96242 0.89329 1.03306 1.68020 1.05916 1.29897 1.10961 1.23704 0.90430 0.97416 0.95157 1.18450 0.78089 0.95309 1.03304 1.91564 1.27714 1.97204 1.93648 1.21392 0.91875 1.00102 0.99658 1.19471 0.94097 0.89910 0.99193 1.67890 1.06529 1.30796 1.16439 1.21152 0.91525 0.98140 0.93691 1.20439 1.00641 0.89738 1.11348 0.91551 0.86044 0.85092 0.80231 0.80180 0.77323 0.82127 0.81173 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.00 13.67 21.62 0.30 -53.70 16 2 C -0.02 -0.91 5.49 84.84 0.47 -0.44 16 3 Si 1.02 41.61 29.55 68.60 2.03 43.63 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.42 -23.41 9.48 67.92 0.64 -22.77 16 8 H 0.10 5.34 5.19 -2.91 -0.02 5.32 16 9 O -0.22 -12.43 9.75 -21.60 -0.21 -12.64 16 10 C 0.14 6.40 6.65 22.65 0.15 6.55 16 11 C -0.25 -10.82 9.15 22.35 0.20 -10.62 16 12 C -0.02 -0.87 9.56 22.47 0.21 -0.65 16 13 C -0.16 -5.02 5.88 -20.02 -0.12 -5.14 16 14 C 0.23 6.42 6.73 42.30 0.28 6.70 16 15 C -0.15 -3.00 9.37 22.35 0.21 -2.79 16 16 C -0.03 -0.53 10.09 22.50 0.23 -0.31 16 17 C 0.03 0.79 6.61 40.44 0.27 1.06 16 18 N -0.44 -8.81 10.33 -188.13 -1.94 -10.76 16 19 C 0.11 1.69 11.14 85.14 0.95 2.64 16 20 C 0.07 1.29 7.28 22.25 0.16 1.45 16 21 F -0.12 -2.10 17.27 44.97 0.78 -1.32 16 22 C -0.10 -2.27 10.08 22.57 0.23 -2.04 16 23 C 0.10 2.54 6.61 40.40 0.27 2.81 16 24 N -0.51 -15.02 9.36 -177.68 -1.66 -16.68 16 25 C -0.03 -0.77 9.40 22.47 0.21 -0.56 16 26 C -0.20 -7.74 9.98 22.36 0.22 -7.52 16 27 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.12 5.33 5.62 -2.91 -0.02 5.32 16 29 H 0.13 4.49 7.51 -2.91 -0.02 4.47 16 30 H 0.18 2.30 6.12 -2.91 -0.02 2.28 16 31 H 0.18 2.12 8.06 -2.92 -0.02 2.10 16 32 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.17 3.25 6.13 -2.91 -0.02 3.23 16 35 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -70.26 315.86 5.04 -65.22 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.17 Total: 17.87 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.59 Total: -31.63 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.31 Total: -81.14 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.21 Total: -12.64 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -70.26 5.04 -65.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.352 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds