Wall clock time and date at job start Tue Mar 31 2020 09:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38309 * 119.95512 * 2 1 4 4 C 1.38258 * 120.16691 * 180.02562 * 3 2 1 5 5 C 1.38218 * 120.06285 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.05094 * 179.97438 * 5 4 3 7 7 C 1.39016 * 119.89877 * 359.97438 * 5 4 3 8 8 N 1.39766 * 120.07984 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00113 * 214.97911 * 8 7 5 10 10 O 1.21383 * 119.99795 * 355.50351 * 9 8 7 11 11 C 1.49342 * 120.00394 * 175.50661 * 9 8 7 12 12 O 1.21362 * 120.00196 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00394 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00413 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.46709 * 324.99595 * 14 13 11 16 16 C 1.52999 * 109.47082 * 84.99545 * 14 13 11 17 17 C 1.50694 * 109.47196 * 204.99741 * 14 13 11 18 18 H 1.07998 * 120.00172 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99995 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00268 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00057 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.46970 * 269.99642 * 21 19 17 23 23 H 1.48502 * 109.47236 * 29.99385 * 21 19 17 24 24 H 1.48498 * 109.47181 * 149.99705 * 21 19 17 25 25 C 1.38102 * 119.95205 * 180.28054 * 2 1 3 26 26 H 1.09002 * 109.47370 * 89.99970 * 1 2 3 27 27 H 1.09005 * 109.47345 * 210.00083 * 1 2 3 28 28 H 1.09001 * 109.47257 * 329.99436 * 1 2 3 29 29 H 1.08001 * 119.91324 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.96866 * 179.97438 * 4 3 2 31 31 H 0.97007 * 120.00386 * 34.96907 * 8 7 5 32 32 H 0.97004 * 119.99610 * 359.97438 * 13 11 9 33 33 H 1.08996 * 109.47005 * 60.00408 * 16 14 13 34 34 H 1.09006 * 109.46815 * 180.02562 * 16 14 13 35 35 H 1.09004 * 109.47214 * 299.99827 * 16 14 13 36 36 H 0.97003 * 120.00694 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.03005 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1983 0.0000 4 6 3.5801 1.2034 -0.0005 5 6 4.2769 0.0098 -0.0016 6 17 6.0129 0.0165 -0.0029 7 6 3.5855 -1.1962 -0.0016 8 7 4.2863 -2.4055 -0.0021 9 6 3.7965 -3.4680 -0.6713 10 8 2.7084 -3.4000 -1.2051 11 6 4.5924 -4.7288 -0.7561 12 8 5.6804 -4.7967 -0.2228 13 7 4.1028 -5.7911 -1.4257 14 6 4.8833 -7.0281 -1.5084 15 1 5.9442 -6.7850 -1.5681 16 6 4.6241 -7.8788 -0.2634 17 6 4.4746 -7.7987 -2.7373 18 1 3.7097 -7.4064 -3.3911 19 6 5.0773 -9.0045 -3.0270 20 7 6.0090 -9.4819 -2.2312 21 14 4.5712 -9.9593 -4.5507 22 1 3.4576 -10.8808 -4.2102 23 1 4.1252 -9.0116 -5.6034 24 1 5.7285 -10.7447 -5.0497 25 6 2.1964 -1.1966 -0.0059 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6554 2.1324 -0.0004 30 1 4.1161 2.1410 -0.0010 31 1 5.1253 -2.4801 0.4790 32 1 3.2333 -5.7368 -1.8523 33 1 3.5633 -8.1219 -0.2038 34 1 5.2052 -8.7990 -0.3248 35 1 4.9198 -7.3214 0.6255 36 1 6.4333 -10.3301 -2.4351 37 1 1.6561 -2.1317 -0.0109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122918708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:07 Heat of formation + Delta-G solvation = -56.860488 kcal Electronic energy + Delta-G solvation = -22546.321827 eV Core-core repulsion = 18928.323605 eV Total energy + Delta-G solvation = -3617.998222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95670 -39.38405 -38.01107 -36.73583 -35.53169 -34.75417 -32.56554 -32.39568 -30.20205 -29.14777 -27.11585 -25.39746 -25.01353 -22.97892 -21.66212 -20.77645 -19.69013 -18.67951 -17.44703 -16.85929 -16.41120 -15.97210 -15.69210 -15.38292 -14.93059 -14.35222 -14.23512 -14.13701 -13.83636 -13.53622 -13.26751 -13.05525 -12.76525 -12.51619 -12.09951 -11.83896 -11.80845 -11.45039 -11.29924 -11.17578 -11.05790 -11.01646 -10.82078 -10.53861 -10.39814 -10.29376 -9.19957 -9.13967 -8.89453 -8.65583 -8.37376 -8.16672 -6.19571 -4.29379 0.77736 1.00179 1.78788 1.90083 2.56554 3.22507 3.29432 3.32219 3.33201 3.64212 3.97482 4.30789 4.49331 4.57964 4.90433 4.91311 5.02966 5.13374 5.14417 5.33469 5.38453 5.58474 5.75051 5.83447 5.89682 6.10858 6.30455 6.62629 6.68862 6.80951 6.96032 6.99727 7.17223 7.34960 7.58825 7.72054 7.82672 8.02199 8.38713 8.56939 8.81525 9.37779 10.86488 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.003101 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.615102 B = 9027.874758 C = 9769.209283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.088 4.088 5 C -0.070 4.070 6 Cl -0.061 7.061 7 C 0.164 3.836 8 N -0.650 5.650 9 C 0.511 3.489 10 O -0.503 6.503 11 C 0.495 3.505 12 O -0.532 6.532 13 N -0.666 5.666 14 C 0.262 3.738 15 H 0.055 0.945 16 C -0.149 4.149 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.272 1.272 24 H -0.284 1.284 25 C -0.113 4.113 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.425 0.575 32 H 0.402 0.598 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 20.236 6.023 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.099 4.099 6 Cl -0.033 7.033 7 C 0.068 3.932 8 N -0.297 5.297 9 C 0.294 3.706 10 O -0.376 6.376 11 C 0.273 3.727 12 O -0.410 6.410 13 N -0.315 5.315 14 C 0.161 3.839 15 H 0.073 0.927 16 C -0.207 4.207 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.197 1.197 24 H -0.210 1.210 25 C -0.133 4.133 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.264 0.736 32 H 0.237 0.763 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.233 19.924 5.994 22.028 hybrid contribution 0.050 -0.517 -0.772 0.930 sum -7.183 19.407 5.222 21.343 Atomic orbital electron populations 1.20812 0.90371 1.03059 1.02870 1.19930 0.96673 0.92354 0.97438 1.20979 0.93157 0.98006 1.02443 1.20850 0.94168 0.96187 0.99535 1.20803 0.84979 0.93825 1.10310 1.98385 1.09081 1.98754 1.97042 1.17499 0.91361 0.84002 1.00338 1.43265 1.26633 1.08829 1.50992 1.21033 0.86502 0.85200 0.77857 1.90716 1.20223 1.82660 1.44021 1.19583 0.86581 0.84270 0.82233 1.90744 1.20675 1.83024 1.46576 1.46506 1.22545 1.13100 1.49372 1.18997 0.92357 0.77841 0.94721 0.92729 1.22103 1.00192 1.02527 0.95895 1.21187 1.23054 1.05284 1.08049 0.91719 1.24876 0.94562 0.97029 0.97098 1.69887 1.24954 1.20177 1.36999 0.86388 0.78146 0.79789 0.82470 1.20433 1.19726 1.21005 1.21237 0.91423 0.99698 1.00917 0.90612 0.91102 0.91257 0.85026 0.84528 0.73561 0.76310 0.95065 0.88680 0.96448 0.92414 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.06 -0.63 5.88 -104.65 -0.62 -1.24 16 3 C -0.13 -1.10 9.69 -39.55 -0.38 -1.48 16 4 C -0.09 -0.83 9.82 -39.58 -0.39 -1.22 16 5 C -0.07 -0.82 6.34 -39.30 -0.25 -1.07 16 6 Cl -0.06 -0.71 27.96 -51.86 -1.45 -2.16 16 7 C 0.16 2.18 6.30 -83.70 -0.53 1.65 16 8 N -0.65 -9.51 5.03 -10.27 -0.05 -9.56 16 9 C 0.51 8.71 7.73 -11.64 -0.09 8.62 16 10 O -0.50 -8.88 13.89 5.47 0.08 -8.80 16 11 C 0.50 9.92 7.85 -11.64 -0.09 9.83 16 12 O -0.53 -11.79 16.14 5.49 0.09 -11.70 16 13 N -0.67 -14.15 5.06 -55.40 -0.28 -14.43 16 14 C 0.26 6.53 2.56 -69.09 -0.18 6.35 16 15 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 16 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 17 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 21 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.11 -1.41 8.35 -39.38 -0.33 -1.74 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.43 5.95 7.56 -40.82 -0.31 5.64 16 32 H 0.40 7.90 8.01 -40.82 -0.33 7.58 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 37 H 0.15 2.03 6.20 -52.48 -0.33 1.71 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -29.05 336.27 -7.65 -36.70 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.16 Total: 9.87 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.54 Total: 3.29 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.30 Total: -47.69 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.16 Total: -20.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.05 -7.65 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122918708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.158 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds