Wall clock time and date at job start Tue Mar 31 2020 09:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38309 * 119.95512 * 2 1 4 4 C 1.38258 * 120.16691 * 180.02562 * 3 2 1 5 5 C 1.38218 * 120.06285 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.05094 * 179.97438 * 5 4 3 7 7 C 1.39016 * 119.89877 * 359.97438 * 5 4 3 8 8 N 1.39766 * 120.07984 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00113 * 214.97911 * 8 7 5 10 10 O 1.21383 * 119.99795 * 355.50351 * 9 8 7 11 11 C 1.49342 * 120.00394 * 175.50661 * 9 8 7 12 12 O 1.21362 * 120.00196 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00394 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00413 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.46709 * 324.99595 * 14 13 11 16 16 C 1.52999 * 109.47082 * 84.99545 * 14 13 11 17 17 C 1.50694 * 109.47196 * 204.99741 * 14 13 11 18 18 H 1.07998 * 120.00172 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99995 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00268 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00057 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.46970 * 269.99642 * 21 19 17 23 23 H 1.48502 * 109.47236 * 29.99385 * 21 19 17 24 24 H 1.48498 * 109.47181 * 149.99705 * 21 19 17 25 25 C 1.38102 * 119.95205 * 180.28054 * 2 1 3 26 26 H 1.09002 * 109.47370 * 89.99970 * 1 2 3 27 27 H 1.09005 * 109.47345 * 210.00083 * 1 2 3 28 28 H 1.09001 * 109.47257 * 329.99436 * 1 2 3 29 29 H 1.08001 * 119.91324 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.96866 * 179.97438 * 4 3 2 31 31 H 0.97007 * 120.00386 * 34.96907 * 8 7 5 32 32 H 0.97004 * 119.99610 * 359.97438 * 13 11 9 33 33 H 1.08996 * 109.47005 * 60.00408 * 16 14 13 34 34 H 1.09006 * 109.46815 * 180.02562 * 16 14 13 35 35 H 1.09004 * 109.47214 * 299.99827 * 16 14 13 36 36 H 0.97003 * 120.00694 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.03005 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1983 0.0000 4 6 3.5801 1.2034 -0.0005 5 6 4.2769 0.0098 -0.0016 6 17 6.0129 0.0165 -0.0029 7 6 3.5855 -1.1962 -0.0016 8 7 4.2863 -2.4055 -0.0021 9 6 3.7965 -3.4680 -0.6713 10 8 2.7084 -3.4000 -1.2051 11 6 4.5924 -4.7288 -0.7561 12 8 5.6804 -4.7967 -0.2228 13 7 4.1028 -5.7911 -1.4257 14 6 4.8833 -7.0281 -1.5084 15 1 5.9442 -6.7850 -1.5681 16 6 4.6241 -7.8788 -0.2634 17 6 4.4746 -7.7987 -2.7373 18 1 3.7097 -7.4064 -3.3911 19 6 5.0773 -9.0045 -3.0270 20 7 6.0090 -9.4819 -2.2312 21 14 4.5712 -9.9593 -4.5507 22 1 3.4576 -10.8808 -4.2102 23 1 4.1252 -9.0116 -5.6034 24 1 5.7285 -10.7447 -5.0497 25 6 2.1964 -1.1966 -0.0059 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6554 2.1324 -0.0004 30 1 4.1161 2.1410 -0.0010 31 1 5.1253 -2.4801 0.4790 32 1 3.2333 -5.7368 -1.8523 33 1 3.5633 -8.1219 -0.2038 34 1 5.2052 -8.7990 -0.3248 35 1 4.9198 -7.3214 0.6255 36 1 6.4333 -10.3301 -2.4351 37 1 1.6561 -2.1317 -0.0109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122918708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:07 Heat of formation + Delta-G solvation = -75.122203 kcal Electronic energy + Delta-G solvation = -22547.113715 eV Core-core repulsion = 18928.323605 eV Total energy + Delta-G solvation = -3618.790110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.21984 -40.61955 -39.39777 -37.61321 -37.12267 -36.18982 -34.37697 -33.26645 -31.34676 -30.88224 -27.83736 -27.40062 -26.43233 -24.07768 -22.80859 -22.17243 -21.32088 -20.15770 -18.58225 -18.21797 -17.80543 -17.20346 -17.15448 -17.03179 -16.37149 -15.85568 -15.38696 -15.05490 -14.90163 -14.77401 -14.61693 -14.45623 -13.86862 -13.76911 -13.50078 -13.10607 -12.93724 -12.89662 -12.77553 -12.68883 -12.45075 -12.32518 -12.25935 -12.15145 -11.99426 -11.52104 -11.17848 -10.74186 -10.63248 -10.02990 -9.75122 -9.29725 -8.21700 -6.39315 -0.21323 0.14850 0.47699 0.99322 1.24698 1.45256 1.46126 1.56810 2.04494 2.37204 2.56078 2.62526 3.09237 3.39466 3.68903 3.87753 4.10597 4.21509 4.29510 4.67527 4.69031 4.74242 4.86133 4.86183 4.94588 4.99137 5.11160 5.14623 5.25865 5.27046 5.39620 5.52558 5.57462 5.71362 5.81429 5.86201 6.01237 6.39552 6.61450 6.69601 7.01871 7.32930 8.84540 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.003101 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.615102 B = 9027.874758 C = 9769.209283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.112 4.112 4 C -0.084 4.084 5 C -0.078 4.078 6 Cl -0.066 7.066 7 C 0.133 3.867 8 N -0.638 5.638 9 C 0.521 3.479 10 O -0.510 6.510 11 C 0.495 3.505 12 O -0.556 6.556 13 N -0.667 5.667 14 C 0.268 3.732 15 H 0.015 0.985 16 C -0.136 4.136 17 C -0.554 4.554 18 H 0.071 0.929 19 C 0.020 3.980 20 N -0.913 5.913 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.267 1.267 24 H -0.284 1.284 25 C -0.129 4.129 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.170 0.830 30 H 0.164 0.836 31 H 0.426 0.574 32 H 0.411 0.589 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 22.452 5.575 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.103 4.103 5 C -0.107 4.107 6 Cl -0.037 7.037 7 C 0.039 3.961 8 N -0.285 5.285 9 C 0.303 3.697 10 O -0.385 6.385 11 C 0.275 3.725 12 O -0.436 6.436 13 N -0.317 5.317 14 C 0.166 3.834 15 H 0.033 0.967 16 C -0.195 4.195 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.191 1.191 24 H -0.209 1.209 25 C -0.150 4.150 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.265 0.735 32 H 0.247 0.753 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.017 22.190 5.560 24.589 hybrid contribution 0.589 -1.054 -0.570 1.335 sum -8.428 21.136 4.990 23.295 Atomic orbital electron populations 1.20883 0.88485 1.04192 1.03498 1.20272 0.98098 0.91859 0.96286 1.21432 0.92912 0.98935 0.99804 1.21246 0.94749 0.96254 0.98078 1.20971 0.84877 0.94083 1.10748 1.98383 1.09515 1.98759 1.97091 1.17703 0.91841 0.83594 1.02980 1.43096 1.26537 1.08890 1.50007 1.20224 0.86060 0.84724 0.78680 1.90717 1.20236 1.82699 1.44853 1.20061 0.86393 0.85011 0.81044 1.90723 1.21887 1.83675 1.47302 1.46254 1.22654 1.12646 1.50123 1.18641 0.90643 0.79171 0.94974 0.96749 1.21931 1.00380 1.01447 0.95745 1.21487 1.23333 1.05727 1.08620 0.91087 1.25734 0.94413 0.97946 0.99975 1.70015 1.25846 1.20585 1.38610 0.85332 0.77827 0.78348 0.78780 1.19550 1.19122 1.20917 1.21253 0.91218 1.00328 1.02151 0.90100 0.91475 0.88713 0.81245 0.81861 0.73456 0.75302 0.93983 0.90747 0.96109 0.92276 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.23 0.71 -0.65 16 2 C -0.06 -1.12 5.88 -19.88 -0.12 -1.24 16 3 C -0.11 -1.51 9.69 22.29 0.22 -1.29 16 4 C -0.08 -1.33 9.82 22.27 0.22 -1.11 16 5 C -0.08 -1.71 6.34 22.45 0.14 -1.57 16 6 Cl -0.07 -1.48 27.96 -2.72 -0.08 -1.55 16 7 C 0.13 3.48 6.30 38.22 0.24 3.72 16 8 N -0.64 -18.93 5.03 -304.76 -1.53 -20.47 16 9 C 0.52 18.07 7.73 87.24 0.67 18.74 16 10 O -0.51 -18.17 13.89 -3.35 -0.05 -18.22 16 11 C 0.50 20.38 7.85 87.24 0.68 21.07 16 12 O -0.56 -25.53 16.14 -3.29 -0.05 -25.59 16 13 N -0.67 -28.98 5.06 -447.55 -2.27 -31.24 16 14 C 0.27 13.76 2.56 44.24 0.11 13.87 16 15 H 0.01 0.86 7.58 -2.38 -0.02 0.84 16 16 C -0.14 -6.74 9.26 71.98 0.67 -6.07 16 17 C -0.55 -29.34 8.73 25.60 0.22 -29.12 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 19 C 0.02 1.07 5.30 84.66 0.45 1.52 16 20 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 21 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.13 -3.15 8.35 22.40 0.19 -2.96 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 28 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.43 12.22 7.56 -92.70 -0.70 11.52 16 32 H 0.41 16.34 8.01 -92.71 -0.74 15.59 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 4.00 6.07 -2.38 -0.01 3.98 16 35 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.13 3.65 6.20 -2.91 -0.02 3.64 16 Total: -1.00 -63.51 336.27 2.40 -61.11 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.31 Total: 28.14 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 4.41 Total: 14.92 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.56 Total: -102.64 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.10 Total: -43.81 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -63.51 2.40 -61.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122918708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.015 kcal (2) G-P(sol) polarization free energy of solvation -63.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds