Wall clock time and date at job start Tue Mar 31 2020 09:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48504 * 109.47101 * 269.99333 * 3 2 1 5 5 H 1.48495 * 109.47175 * 29.99965 * 3 2 1 6 6 H 1.48504 * 109.46726 * 149.99694 * 3 2 1 7 7 C 1.37877 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99749 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46890 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.53979 * 68.37723 * 12 11 10 14 14 O 1.42094 * 110.54679 * 291.62806 * 12 11 10 15 15 O 1.52205 * 104.45097 * 180.02562 * 12 11 10 16 16 C 1.35895 * 113.99608 * 75.00230 * 15 12 11 17 17 C 1.38748 * 120.09186 * 90.00555 * 16 15 12 18 18 C 1.38006 * 119.87745 * 180.02562 * 17 16 15 19 19 C 1.38542 * 120.29202 * 359.97438 * 18 17 16 20 20 C 1.38266 * 119.93797 * 0.02562 * 19 18 17 21 21 C 1.38416 * 119.90274 * 0.02562 * 20 19 18 22 22 C 1.51383 * 109.75351 * 180.02562 * 20 19 18 23 23 C 1.54339 * 105.17324 * 342.80716 * 22 20 19 24 24 C 1.51698 * 130.24225 * 179.84274 * 19 18 17 25 25 H 0.97004 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47224 * 60.00108 * 9 7 2 27 27 H 1.08999 * 109.47096 * 300.00004 * 9 7 2 28 28 H 1.08996 * 109.47065 * 59.99989 * 10 9 7 29 29 H 1.08999 * 109.47186 * 299.99928 * 10 9 7 30 30 H 1.09001 * 109.46690 * 60.00203 * 11 10 9 31 31 H 1.08999 * 109.47275 * 300.00029 * 11 10 9 32 32 H 1.08007 * 120.06382 * 0.02562 * 17 16 15 33 33 H 1.08006 * 119.85283 * 180.02562 * 18 17 16 34 34 H 1.07995 * 119.91041 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.30267 * 223.87989 * 22 20 19 36 36 H 1.08997 * 110.38024 * 101.77648 * 22 20 19 37 37 H 1.09002 * 110.82153 * 144.59302 * 23 22 20 38 38 H 1.09002 * 110.82354 * 267.94058 * 23 22 20 39 39 H 1.09003 * 110.25235 * 78.27189 * 24 19 18 40 40 H 1.08997 * 110.49495 * 316.02724 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5515 -2.6366 0.0009 12 16 6.1561 -4.3468 0.0016 13 8 5.8600 -4.9808 -1.2353 14 8 5.8600 -4.9800 1.2387 15 8 7.6723 -4.2137 0.0021 16 6 8.1943 -3.8450 1.2014 17 6 8.5629 -4.8114 2.1263 18 6 9.0921 -4.4320 3.3431 19 6 9.2574 -3.0901 3.6454 20 6 8.8908 -2.1252 2.7254 21 6 8.3589 -2.5026 1.5046 22 6 9.1696 -0.7483 3.2894 23 6 9.3342 -0.9601 4.8093 24 6 9.8049 -2.4273 4.8953 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6585 -3.1502 -0.8892 29 1 3.6578 -3.1507 0.8907 30 1 5.9148 -2.1229 0.8910 31 1 5.9148 -2.1227 -0.8890 32 1 8.4360 -5.8586 1.8944 33 1 9.3793 -5.1846 4.0626 34 1 8.0729 -1.7491 0.7857 35 1 8.3315 -0.0808 3.0891 36 1 10.0865 -0.3418 2.8627 37 1 10.0890 -0.2864 5.2149 38 1 8.3826 -0.8281 5.3243 39 1 10.8939 -2.4751 4.9016 40 1 9.3996 -2.9031 5.7883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104105913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:37 Heat of formation + Delta-G solvation = -95.922630 kcal Electronic energy + Delta-G solvation = -23450.232144 eV Core-core repulsion = 19936.124110 eV Total energy + Delta-G solvation = -3514.108034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34887 -39.51873 -37.10246 -36.00783 -35.37960 -34.87419 -32.29515 -31.76808 -29.08996 -28.48915 -27.60891 -24.04284 -23.20822 -22.47245 -21.22630 -20.59771 -19.90766 -18.16123 -17.57221 -17.45611 -16.70628 -16.27443 -15.96662 -15.45975 -15.41321 -14.46955 -14.32995 -14.19431 -13.87386 -13.40599 -13.22264 -12.96051 -12.87210 -12.50555 -12.41284 -12.29549 -12.18157 -12.03851 -11.97510 -11.88913 -11.64579 -11.56030 -11.19805 -11.08365 -11.02245 -10.97000 -10.12013 -9.89663 -9.64901 -9.28891 -9.24136 -8.81146 -8.60378 -6.09965 -4.09333 0.04716 0.91189 0.94633 2.13759 3.19900 3.24927 3.32290 3.33956 3.68656 3.97296 4.06529 4.11532 4.38595 4.47324 4.64627 4.67569 4.70600 4.81965 4.90542 4.95545 5.08090 5.23598 5.24746 5.30704 5.40838 5.47866 5.50047 5.68012 5.70519 5.77094 5.79569 5.88045 5.98627 6.11048 6.18668 6.21563 6.53419 6.63668 7.09783 7.23953 7.69013 8.45924 8.94416 9.51014 11.03336 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.004365 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.666645 B = 6413.578225 C = 8073.354679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.095 4.095 11 C -0.639 4.639 12 S 2.585 3.415 13 O -0.930 6.930 14 O -0.953 6.953 15 O -0.668 6.668 16 C 0.071 3.929 17 C -0.089 4.089 18 C -0.091 4.091 19 C -0.084 4.084 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.085 4.085 23 C -0.122 4.122 24 C -0.083 4.083 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.161 -3.864 9.122 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.133 4.133 11 C -0.768 4.768 12 S 2.683 3.317 13 O -0.929 6.929 14 O -0.951 6.951 15 O -0.627 6.627 16 C 0.030 3.970 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.085 4.085 20 C -0.081 4.081 21 C -0.138 4.138 22 C -0.122 4.122 23 C -0.159 4.159 24 C -0.120 4.120 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.127 -4.525 8.912 26.116 hybrid contribution 0.070 1.487 -0.382 1.537 sum 24.197 -3.038 8.530 25.836 Atomic orbital electron populations 1.69912 1.06277 1.26985 1.50658 1.25017 0.94750 0.99139 0.94442 0.86783 0.80306 0.83658 0.78563 1.20188 1.21240 1.19086 1.21126 0.89194 0.94812 1.51392 0.90685 1.19535 0.97388 0.90623 0.96748 1.21299 0.85951 1.03126 1.02973 1.30871 1.10544 1.23854 1.11512 1.05780 0.72945 0.78335 0.74650 1.93619 1.81039 1.73156 1.45049 1.93619 1.82227 1.73596 1.45664 1.85742 1.48478 1.87663 1.40791 1.17797 1.04335 0.93084 0.81808 1.21184 0.97222 0.99880 0.92663 1.20518 0.99165 0.95171 0.96046 1.20906 0.97592 0.93159 0.96805 1.20387 0.97920 0.96877 0.92897 1.20791 1.01255 0.94127 0.97625 1.21116 1.02794 0.93028 0.95223 1.22319 1.02344 0.95764 0.95501 1.21163 1.00835 0.95016 0.95001 0.92607 0.96168 0.96553 0.90801 0.90787 0.85218 0.84784 0.84053 0.84614 0.84161 0.89846 0.89653 0.90204 0.90431 0.89759 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.63 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 10 C -0.09 -1.86 5.16 -26.73 -0.14 -1.99 16 11 C -0.64 -9.70 5.46 37.16 0.20 -9.49 16 12 S 2.58 40.84 5.17 -107.50 -0.56 40.28 16 13 O -0.93 -17.46 18.09 -67.03 -1.21 -18.68 16 14 O -0.95 -16.60 16.26 -67.04 -1.09 -17.69 16 15 O -0.67 -9.42 10.05 -51.73 -0.52 -9.94 16 16 C 0.07 0.93 4.79 -39.26 -0.19 0.74 16 17 C -0.09 -1.05 9.05 -39.48 -0.36 -1.41 16 18 C -0.09 -0.87 10.03 -39.55 -0.40 -1.26 16 19 C -0.08 -0.77 6.15 -104.01 -0.64 -1.41 16 20 C -0.08 -0.81 6.13 -104.21 -0.64 -1.44 16 21 C -0.12 -1.34 8.45 -39.38 -0.33 -1.67 16 22 C -0.08 -0.63 6.77 -26.85 -0.18 -0.82 16 23 C -0.12 -0.75 7.07 -25.33 -0.18 -0.93 16 24 C -0.08 -0.53 6.79 -26.70 -0.18 -0.71 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.13 1.72 6.60 -51.92 -0.34 1.38 16 31 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 32 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.14 1.34 7.49 -52.49 -0.39 0.94 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -35.38 341.34 -11.44 -46.82 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.74 Total: -1.64 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -3.57 Total: -34.07 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.86 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.82 Total: -46.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 40.84 SS G_CDS: -0.56 Total: 40.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.38 -11.44 -46.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104105913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.101 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds