Wall clock time and date at job start Tue Mar 31 2020 09:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48504 * 109.47101 * 269.99333 * 3 2 1 5 5 H 1.48495 * 109.47175 * 29.99965 * 3 2 1 6 6 H 1.48504 * 109.46726 * 149.99694 * 3 2 1 7 7 C 1.37877 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99749 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46890 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.53979 * 68.37723 * 12 11 10 14 14 O 1.42094 * 110.54679 * 291.62806 * 12 11 10 15 15 O 1.52205 * 104.45097 * 180.02562 * 12 11 10 16 16 C 1.35895 * 113.99608 * 75.00230 * 15 12 11 17 17 C 1.38748 * 120.09186 * 90.00555 * 16 15 12 18 18 C 1.38006 * 119.87745 * 180.02562 * 17 16 15 19 19 C 1.38542 * 120.29202 * 359.97438 * 18 17 16 20 20 C 1.38266 * 119.93797 * 0.02562 * 19 18 17 21 21 C 1.38416 * 119.90274 * 0.02562 * 20 19 18 22 22 C 1.51383 * 109.75351 * 180.02562 * 20 19 18 23 23 C 1.54339 * 105.17324 * 342.80716 * 22 20 19 24 24 C 1.51698 * 130.24225 * 179.84274 * 19 18 17 25 25 H 0.97004 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47224 * 60.00108 * 9 7 2 27 27 H 1.08999 * 109.47096 * 300.00004 * 9 7 2 28 28 H 1.08996 * 109.47065 * 59.99989 * 10 9 7 29 29 H 1.08999 * 109.47186 * 299.99928 * 10 9 7 30 30 H 1.09001 * 109.46690 * 60.00203 * 11 10 9 31 31 H 1.08999 * 109.47275 * 300.00029 * 11 10 9 32 32 H 1.08007 * 120.06382 * 0.02562 * 17 16 15 33 33 H 1.08006 * 119.85283 * 180.02562 * 18 17 16 34 34 H 1.07995 * 119.91041 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.30267 * 223.87989 * 22 20 19 36 36 H 1.08997 * 110.38024 * 101.77648 * 22 20 19 37 37 H 1.09002 * 110.82153 * 144.59302 * 23 22 20 38 38 H 1.09002 * 110.82354 * 267.94058 * 23 22 20 39 39 H 1.09003 * 110.25235 * 78.27189 * 24 19 18 40 40 H 1.08997 * 110.49495 * 316.02724 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5515 -2.6366 0.0009 12 16 6.1561 -4.3468 0.0016 13 8 5.8600 -4.9808 -1.2353 14 8 5.8600 -4.9800 1.2387 15 8 7.6723 -4.2137 0.0021 16 6 8.1943 -3.8450 1.2014 17 6 8.5629 -4.8114 2.1263 18 6 9.0921 -4.4320 3.3431 19 6 9.2574 -3.0901 3.6454 20 6 8.8908 -2.1252 2.7254 21 6 8.3589 -2.5026 1.5046 22 6 9.1696 -0.7483 3.2894 23 6 9.3342 -0.9601 4.8093 24 6 9.8049 -2.4273 4.8953 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6585 -3.1502 -0.8892 29 1 3.6578 -3.1507 0.8907 30 1 5.9148 -2.1229 0.8910 31 1 5.9148 -2.1227 -0.8890 32 1 8.4360 -5.8586 1.8944 33 1 9.3793 -5.1846 4.0626 34 1 8.0729 -1.7491 0.7857 35 1 8.3315 -0.0808 3.0891 36 1 10.0865 -0.3418 2.8627 37 1 10.0890 -0.2864 5.2149 38 1 8.3826 -0.8281 5.3243 39 1 10.8939 -2.4751 4.9016 40 1 9.3996 -2.9031 5.7883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104105913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:36 Heat of formation + Delta-G solvation = -118.550273 kcal Electronic energy + Delta-G solvation = -23451.213352 eV Core-core repulsion = 19936.124110 eV Total energy + Delta-G solvation = -3515.089242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26619 -40.30965 -38.42909 -37.33767 -36.60058 -36.04398 -34.30785 -32.53192 -30.27299 -29.77710 -28.24136 -25.64280 -24.22619 -23.33152 -22.27952 -21.76072 -20.97620 -19.31990 -19.06099 -18.67879 -18.26423 -17.18209 -16.81613 -16.54515 -16.28676 -16.11589 -15.77932 -15.15231 -14.88232 -14.67422 -14.34756 -14.09463 -13.87263 -13.76704 -13.68691 -13.44911 -13.41788 -13.30410 -13.26256 -12.90366 -12.74083 -12.62205 -12.52124 -12.02801 -11.89363 -11.86756 -11.67979 -11.64773 -11.43518 -11.28276 -10.78197 -10.01471 -9.57249 -8.30381 -6.36666 -1.12002 0.03518 0.17565 1.02794 1.36467 1.38925 1.50487 2.35961 2.42687 2.46141 2.86109 3.04752 3.31370 3.51100 3.54173 3.68762 3.76072 3.98337 4.11176 4.16472 4.21248 4.25174 4.26650 4.52616 4.63603 4.71186 4.75617 4.86602 4.90326 4.91736 4.97336 5.08955 5.13421 5.16726 5.27602 5.29320 5.40260 5.42663 5.47426 5.60810 5.78054 6.24124 6.71310 7.28008 8.86607 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.004365 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.666645 B = 6413.578225 C = 8073.354679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.545 4.545 8 H 0.030 0.970 9 C -0.004 4.004 10 C -0.100 4.100 11 C -0.629 4.629 12 S 2.601 3.399 13 O -0.968 6.968 14 O -0.975 6.975 15 O -0.662 6.662 16 C 0.034 3.966 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.083 4.083 20 C -0.092 4.092 21 C -0.127 4.127 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.082 4.082 25 H 0.267 0.733 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.415 -1.684 10.576 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.583 4.583 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.139 4.139 11 C -0.759 4.759 12 S 2.701 3.299 13 O -0.966 6.966 14 O -0.973 6.973 15 O -0.621 6.621 16 C -0.008 4.008 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.160 0.840 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.389 -2.378 10.360 29.380 hybrid contribution -0.916 0.745 -0.742 1.394 sum 26.474 -1.634 9.618 28.214 Atomic orbital electron populations 1.70085 1.08536 1.28341 1.52259 1.26100 0.95683 1.03861 0.93811 0.85609 0.79788 0.77597 0.79388 1.19042 1.21030 1.15967 1.21532 0.92237 0.93362 1.51165 0.95149 1.19506 0.93803 0.93129 0.97852 1.21172 0.89246 1.00929 1.02530 1.30737 1.06979 1.23928 1.14222 1.05189 0.73079 0.78252 0.73360 1.93566 1.82201 1.74385 1.46495 1.93575 1.82960 1.74450 1.46361 1.85711 1.46948 1.87797 1.41645 1.18204 1.06363 0.94357 0.81838 1.21441 0.97923 1.00009 0.93551 1.20848 0.98394 0.96332 0.95623 1.21396 0.96204 0.92976 0.97844 1.20822 0.97301 0.98585 0.92494 1.21035 1.01390 0.93667 0.98625 1.21237 1.03507 0.91499 0.96068 1.22367 1.02878 0.95989 0.94515 1.21281 1.01891 0.94863 0.93817 0.92400 0.94758 0.94994 0.91568 0.91447 0.82786 0.81963 0.84050 0.81979 0.82658 0.89823 0.88123 0.88045 0.90900 0.87865 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 42.80 27.47 68.60 1.88 44.69 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 7 C -0.54 -31.58 9.66 25.60 0.25 -31.33 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.10 -3.88 5.16 30.60 0.16 -3.72 16 11 C -0.63 -17.95 5.46 71.98 0.39 -17.56 16 12 S 2.60 81.89 5.17 -56.49 -0.29 81.60 16 13 O -0.97 -36.97 18.09 -118.57 -2.15 -39.12 16 14 O -0.97 -34.34 16.26 -118.57 -1.93 -36.27 16 15 O -0.66 -18.39 10.05 -61.46 -0.62 -19.01 16 16 C 0.03 0.84 4.79 22.48 0.11 0.95 16 17 C -0.11 -2.49 9.05 22.34 0.20 -2.29 16 18 C -0.09 -1.62 10.03 22.29 0.22 -1.40 16 19 C -0.08 -1.31 6.15 -19.47 -0.12 -1.43 16 20 C -0.09 -1.59 6.13 -19.60 -0.12 -1.71 16 21 C -0.13 -2.63 8.45 22.40 0.19 -2.44 16 22 C -0.09 -1.00 6.77 30.52 0.21 -0.79 16 23 C -0.12 -1.02 7.07 31.50 0.22 -0.80 16 24 C -0.08 -0.74 6.79 30.62 0.21 -0.53 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 27 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 28 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.15 3.65 6.60 -2.39 -0.02 3.64 16 31 H 0.16 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.16 2.54 7.49 -2.91 -0.02 2.52 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.84 341.34 0.68 -78.16 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.98 Total: 12.17 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 2.50 Total: -62.54 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.30 Total: -59.68 kcal Atomic # 8 Polarization: -89.70 SS G_CDS: -4.69 Total: -94.39 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.69 kcal Atomic # 16 Polarization: 81.89 SS G_CDS: -0.29 Total: 81.60 kcal Total: -78.84 0.68 -78.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104105913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.389 kcal (2) G-P(sol) polarization free energy of solvation -78.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds