Wall clock time and date at job start Tue Mar 31 2020 10:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 103.00123 * 2 1 4 4 C 1.38914 * 120.02788 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.97707 * 180.23050 * 4 3 2 6 6 C 1.38712 * 120.02302 * 359.48879 * 5 4 3 7 7 O 1.35997 * 119.97363 * 180.27645 * 6 5 4 8 8 C 1.42908 * 116.99914 * 185.68970 * 7 6 5 9 9 H 1.09003 * 109.46776 * 35.08443 * 8 7 6 10 10 C 1.52996 * 109.47033 * 275.08091 * 8 7 6 11 11 C 1.50700 * 109.46807 * 155.07942 * 8 7 6 12 12 O 1.20819 * 120.00635 * 5.00409 * 11 8 7 13 13 O 1.34238 * 119.99567 * 184.99862 * 11 8 7 14 14 C 1.45196 * 116.99830 * 180.02562 * 13 11 8 15 15 C 1.52994 * 109.46938 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00455 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99827 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00216 * 0.02562 * 18 16 15 20 20 Si 1.86811 * 119.99889 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47251 * 89.99711 * 20 18 16 22 22 H 1.48502 * 109.46858 * 210.00402 * 20 18 16 23 23 H 1.48501 * 109.47003 * 329.99735 * 20 18 16 24 24 C 1.38711 * 120.04611 * 0.50968 * 6 5 4 25 25 C 1.38085 * 120.02805 * 359.74562 * 24 6 5 26 26 H 1.09000 * 109.46699 * 60.00596 * 1 2 3 27 27 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46957 * 300.00110 * 1 2 3 29 29 H 1.08005 * 120.00956 * 359.94886 * 4 3 2 30 30 H 1.08001 * 119.98331 * 179.74234 * 5 4 3 31 31 H 1.09006 * 109.47270 * 60.00152 * 10 8 7 32 32 H 1.09004 * 109.47304 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47092 * 300.00259 * 10 8 7 34 34 H 1.08992 * 109.47293 * 300.00225 * 14 13 11 35 35 H 1.09007 * 109.46927 * 60.00476 * 14 13 11 36 36 H 1.08995 * 109.47900 * 300.00012 * 15 14 13 37 37 H 1.09005 * 109.47250 * 60.00738 * 15 14 13 38 38 H 0.97009 * 119.99709 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.98333 * 179.76717 * 24 6 5 40 40 H 1.08005 * 120.00981 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5387 2.1236 -0.0005 5 6 3.8481 3.4694 0.0043 6 6 2.8333 4.4150 -0.0011 7 8 3.1392 5.7401 -0.0020 8 6 2.0501 6.6575 0.1187 9 1 1.2892 6.2338 0.7742 10 6 1.4463 6.9167 -1.2630 11 6 2.5486 7.9551 0.7006 12 8 3.7298 8.1142 0.8988 13 8 1.6802 8.9344 0.9987 14 6 2.2311 10.1569 1.5556 15 6 1.0985 11.1487 1.8282 16 6 1.6704 12.4179 2.4055 17 1 2.7352 12.5082 2.5620 18 6 0.8341 13.4637 2.7341 19 7 -0.4625 13.3536 2.5441 20 14 1.5430 15.0373 3.4492 21 1 1.8759 15.9756 2.3475 22 1 0.5436 15.6657 4.3500 23 1 2.7732 14.7210 4.2186 24 6 1.5066 4.0099 -0.0006 25 6 1.1948 2.6647 -0.0001 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.3290 1.3875 -0.0001 30 1 4.8808 3.7857 0.0081 31 1 1.0857 5.9780 -1.6839 32 1 0.6153 7.6161 -1.1709 33 1 2.2072 7.3402 -1.9184 34 1 2.7487 9.9307 2.4877 35 1 2.9340 10.5946 0.8466 36 1 0.5813 11.3750 0.8958 37 1 0.3953 10.7114 2.5369 38 1 -1.0508 14.0894 2.7756 39 1 0.7172 4.7470 -0.0009 40 1 0.1617 2.3497 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172726919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:40 Heat of formation + Delta-G solvation = -105.286905 kcal Electronic energy + Delta-G solvation = -22144.958418 eV Core-core repulsion = 18630.444319 eV Total energy + Delta-G solvation = -3514.514100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87387 -39.76984 -37.78507 -36.10359 -33.45643 -32.63132 -31.40695 -30.40379 -30.17493 -29.11023 -25.71132 -24.62935 -23.26508 -22.79000 -21.12871 -20.45168 -18.83412 -17.73143 -17.46254 -16.69496 -16.31047 -16.07859 -15.54179 -15.38640 -15.21806 -14.82914 -14.52627 -14.24341 -14.12466 -13.71132 -13.53815 -13.10631 -13.01039 -12.85521 -12.59048 -12.40304 -12.23228 -12.07053 -11.54900 -11.28674 -11.21627 -11.09582 -10.81421 -10.72678 -10.63224 -10.22648 -9.73919 -9.70259 -9.46744 -9.36515 -9.32744 -8.49004 -7.56119 -6.15094 -4.19638 0.91753 0.94907 1.17286 2.03869 2.26890 2.36816 3.25917 3.31894 3.32661 3.35362 3.47706 4.32645 4.36735 4.44995 4.56190 4.62139 4.62656 4.64597 4.85425 4.89381 5.03341 5.18369 5.21726 5.24272 5.39148 5.40464 5.57618 5.72810 5.87210 5.92037 5.96394 5.99628 6.01037 6.29192 6.55089 6.82663 7.04302 7.49054 7.55125 7.80817 8.05727 8.18366 8.85701 9.45086 10.96299 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002073 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.595462 B =13502.987316 C =13910.811392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.124 6.124 3 C -0.124 4.124 4 C -0.058 4.058 5 C -0.129 4.129 6 C 0.133 3.867 7 O -0.286 6.286 8 C 0.092 3.908 9 H 0.110 0.890 10 C -0.175 4.175 11 C 0.459 3.541 12 O -0.493 6.493 13 O -0.351 6.351 14 C 0.076 3.924 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.192 4.192 25 C -0.090 4.090 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.137 0.863 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 -26.212 -7.617 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.116 5.884 3 C -0.237 4.237 4 C -0.082 4.082 5 C -0.149 4.149 6 C 0.086 3.914 7 O -0.200 6.200 8 C 0.035 3.965 9 H 0.127 0.873 10 C -0.232 4.232 11 C 0.300 3.700 12 O -0.381 6.381 13 O -0.268 6.268 14 C 0.004 3.996 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.212 4.212 25 C -0.113 4.113 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.816 -26.965 -7.527 28.055 hybrid contribution -0.669 2.102 0.472 2.255 sum 1.147 -24.864 -7.055 25.870 Atomic orbital electron populations 1.23665 0.94725 1.07110 1.05720 1.85423 1.06495 1.03164 1.93286 1.21548 0.96584 0.96464 1.09069 1.20562 0.94425 0.94946 0.98221 1.20408 0.99077 0.90720 1.04719 1.19046 0.93308 0.83001 0.96091 1.86203 1.33716 1.12656 1.87387 1.21703 0.88607 0.86717 0.99489 0.87299 1.22326 1.02600 1.04044 0.94206 1.22778 0.85343 0.85680 0.76211 1.90671 1.17893 1.80739 1.48756 1.86491 1.40744 1.25832 1.73718 1.23752 0.99623 0.79458 0.96815 1.19184 0.92510 0.91280 0.98218 1.20968 0.93946 0.98600 1.43041 0.92193 1.24984 0.94802 0.98876 0.95480 1.69969 1.02753 1.32499 1.47577 0.86457 0.78874 0.82849 0.79061 1.20445 1.21024 1.19691 1.21263 0.95515 0.96873 1.07565 1.20946 0.98374 0.92163 0.99853 0.89727 0.87424 0.89687 0.84680 0.84251 0.90522 0.88837 0.90569 0.92063 0.92031 0.95253 0.95274 0.92666 0.84496 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.15 101.05 0.92 0.21 16 2 S -0.12 -0.99 22.56 -107.50 -2.43 -3.41 16 3 C -0.12 -1.16 6.11 -39.08 -0.24 -1.40 16 4 C -0.06 -0.55 9.79 -39.39 -0.39 -0.93 16 5 C -0.13 -1.36 9.98 -39.46 -0.39 -1.75 16 6 C 0.13 1.55 6.60 -39.23 -0.26 1.29 16 7 O -0.29 -3.97 9.34 -39.63 -0.37 -4.34 16 8 C 0.09 1.20 2.75 -27.88 -0.08 1.12 16 9 H 0.11 1.17 6.31 -51.93 -0.33 0.84 16 10 C -0.17 -1.82 9.15 37.16 0.34 -1.48 16 11 C 0.46 8.05 7.29 36.01 0.26 8.31 16 12 O -0.49 -10.19 16.25 -25.46 -0.41 -10.61 16 13 O -0.35 -6.75 10.21 -39.28 -0.40 -7.15 16 14 C 0.08 1.65 5.40 37.15 0.20 1.85 16 15 C 0.03 0.64 5.35 -27.89 -0.15 0.50 16 16 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.19 -1.87 8.23 -39.46 -0.32 -2.20 16 25 C -0.09 -0.80 9.36 -39.39 -0.37 -1.16 16 26 H 0.08 0.37 7.75 -51.92 -0.40 -0.03 16 27 H 0.11 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.08 0.39 7.74 -51.93 -0.40 -0.02 16 29 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.08 0.64 6.90 -51.93 -0.36 0.28 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.14 1.11 5.41 -52.49 -0.28 0.83 16 40 H 0.13 0.85 5.87 -52.48 -0.31 0.54 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -32.06 355.37 -8.85 -40.91 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.43 Total: -2.72 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.88 Total: -8.98 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.19 Total: -22.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.43 Total: -3.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.06 -8.85 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172726919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.378 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds