Wall clock time and date at job start Tue Mar 31 2020 10:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 103.00123 * 2 1 4 4 C 1.38914 * 120.02788 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.97707 * 180.23050 * 4 3 2 6 6 C 1.38712 * 120.02302 * 359.48879 * 5 4 3 7 7 O 1.35997 * 119.97363 * 180.27645 * 6 5 4 8 8 C 1.42908 * 116.99914 * 185.68970 * 7 6 5 9 9 H 1.09003 * 109.46776 * 35.08443 * 8 7 6 10 10 C 1.52996 * 109.47033 * 275.08091 * 8 7 6 11 11 C 1.50700 * 109.46807 * 155.07942 * 8 7 6 12 12 O 1.20819 * 120.00635 * 5.00409 * 11 8 7 13 13 O 1.34238 * 119.99567 * 184.99862 * 11 8 7 14 14 C 1.45196 * 116.99830 * 180.02562 * 13 11 8 15 15 C 1.52994 * 109.46938 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00455 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99827 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00216 * 0.02562 * 18 16 15 20 20 Si 1.86811 * 119.99889 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47251 * 89.99711 * 20 18 16 22 22 H 1.48502 * 109.46858 * 210.00402 * 20 18 16 23 23 H 1.48501 * 109.47003 * 329.99735 * 20 18 16 24 24 C 1.38711 * 120.04611 * 0.50968 * 6 5 4 25 25 C 1.38085 * 120.02805 * 359.74562 * 24 6 5 26 26 H 1.09000 * 109.46699 * 60.00596 * 1 2 3 27 27 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46957 * 300.00110 * 1 2 3 29 29 H 1.08005 * 120.00956 * 359.94886 * 4 3 2 30 30 H 1.08001 * 119.98331 * 179.74234 * 5 4 3 31 31 H 1.09006 * 109.47270 * 60.00152 * 10 8 7 32 32 H 1.09004 * 109.47304 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47092 * 300.00259 * 10 8 7 34 34 H 1.08992 * 109.47293 * 300.00225 * 14 13 11 35 35 H 1.09007 * 109.46927 * 60.00476 * 14 13 11 36 36 H 1.08995 * 109.47900 * 300.00012 * 15 14 13 37 37 H 1.09005 * 109.47250 * 60.00738 * 15 14 13 38 38 H 0.97009 * 119.99709 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.98333 * 179.76717 * 24 6 5 40 40 H 1.08005 * 120.00981 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5387 2.1236 -0.0005 5 6 3.8481 3.4694 0.0043 6 6 2.8333 4.4150 -0.0011 7 8 3.1392 5.7401 -0.0020 8 6 2.0501 6.6575 0.1187 9 1 1.2892 6.2338 0.7742 10 6 1.4463 6.9167 -1.2630 11 6 2.5486 7.9551 0.7006 12 8 3.7298 8.1142 0.8988 13 8 1.6802 8.9344 0.9987 14 6 2.2311 10.1569 1.5556 15 6 1.0985 11.1487 1.8282 16 6 1.6704 12.4179 2.4055 17 1 2.7352 12.5082 2.5620 18 6 0.8341 13.4637 2.7341 19 7 -0.4625 13.3536 2.5441 20 14 1.5430 15.0373 3.4492 21 1 1.8759 15.9756 2.3475 22 1 0.5436 15.6657 4.3500 23 1 2.7732 14.7210 4.2186 24 6 1.5066 4.0099 -0.0006 25 6 1.1948 2.6647 -0.0001 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.3290 1.3875 -0.0001 30 1 4.8808 3.7857 0.0081 31 1 1.0857 5.9780 -1.6839 32 1 0.6153 7.6161 -1.1709 33 1 2.2072 7.3402 -1.9184 34 1 2.7487 9.9307 2.4877 35 1 2.9340 10.5946 0.8466 36 1 0.5813 11.3750 0.8958 37 1 0.3953 10.7114 2.5369 38 1 -1.0508 14.0894 2.7756 39 1 0.7172 4.7470 -0.0009 40 1 0.1617 2.3497 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172726919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:40 Heat of formation + Delta-G solvation = -121.638360 kcal Electronic energy + Delta-G solvation = -22145.667471 eV Core-core repulsion = 18630.444319 eV Total energy + Delta-G solvation = -3515.223152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.01204 -40.96602 -38.70026 -37.65266 -35.49219 -33.64789 -32.37026 -31.95024 -31.06005 -29.57271 -27.39180 -25.96163 -24.15732 -23.69629 -22.90562 -21.76972 -19.71732 -18.94052 -18.53183 -18.23054 -17.82553 -17.61243 -16.63419 -16.46306 -16.36385 -15.89575 -15.58298 -15.15477 -14.82143 -14.76245 -14.62142 -14.38913 -14.16800 -13.83756 -13.61184 -13.38628 -13.19144 -13.17952 -12.96228 -12.84202 -12.64449 -12.59042 -12.37071 -12.03723 -11.81705 -11.55128 -11.53236 -11.32394 -11.19705 -10.62264 -10.20322 -10.09096 -8.28468 -8.22226 -6.41248 0.15595 0.23406 0.60423 0.96107 1.06299 1.41564 1.42183 1.51081 1.53882 2.31449 2.43331 2.58385 3.06213 3.37728 3.58843 3.70336 3.73910 3.84407 4.16076 4.17927 4.19920 4.27677 4.29869 4.33408 4.48642 4.56424 4.61885 4.65533 4.85509 4.92450 4.97418 5.06079 5.17361 5.20263 5.22682 5.44914 5.44991 5.55678 5.71472 6.04670 6.19285 6.56979 6.72000 7.28404 8.83885 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002073 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.595462 B =13502.987316 C =13910.811392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.147 6.147 3 C -0.129 4.129 4 C -0.064 4.064 5 C -0.140 4.140 6 C 0.108 3.892 7 O -0.310 6.310 8 C 0.100 3.900 9 H 0.136 0.864 10 C -0.169 4.169 11 C 0.457 3.543 12 O -0.529 6.529 13 O -0.352 6.352 14 C 0.090 3.910 15 C 0.032 3.968 16 C -0.551 4.551 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.972 3.028 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.190 4.190 25 C -0.091 4.091 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.268 0.732 39 H 0.155 0.845 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -27.271 -7.781 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.094 5.906 3 C -0.241 4.241 4 C -0.087 4.087 5 C -0.160 4.160 6 C 0.061 3.939 7 O -0.225 6.225 8 C 0.043 3.957 9 H 0.153 0.847 10 C -0.226 4.226 11 C 0.300 3.700 12 O -0.418 6.418 13 O -0.268 6.268 14 C 0.017 3.983 15 C -0.005 4.005 16 C -0.589 4.589 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.563 5.563 20 Si 0.795 3.205 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.210 4.210 25 C -0.115 4.115 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.172 0.828 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.042 -28.058 -7.703 29.114 hybrid contribution -0.460 2.251 0.499 2.351 sum 0.582 -25.807 -7.203 26.800 Atomic orbital electron populations 1.23786 0.91768 1.08518 1.06562 1.85533 1.09815 1.02218 1.93045 1.21792 0.96722 0.97448 1.08138 1.20755 0.95221 0.94715 0.98038 1.20553 0.99189 0.91221 1.05031 1.19255 0.94527 0.82035 0.98057 1.86156 1.34416 1.13800 1.88079 1.21810 0.88637 0.84276 1.01007 0.84717 1.22345 1.02236 1.05577 0.92428 1.23785 0.84735 0.86423 0.75013 1.90651 1.19387 1.81422 1.50292 1.86474 1.41037 1.25510 1.73792 1.23271 0.97892 0.80166 0.97004 1.18984 0.93053 0.91868 0.96602 1.21363 0.94362 0.99736 1.43459 0.91826 1.25928 0.95119 1.02463 0.95655 1.70080 1.04088 1.33793 1.48368 0.85348 0.78314 0.78340 0.78458 1.19550 1.20340 1.18906 1.21454 0.95020 0.97737 1.06825 1.21250 0.99518 0.91666 0.99028 0.88720 0.85780 0.88944 0.83407 0.84268 0.87800 0.88298 0.91489 0.92160 0.92012 0.97052 0.97178 0.92290 0.82803 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.15 113.37 1.04 0.08 16 2 S -0.15 -2.07 22.56 -56.49 -1.27 -3.34 16 3 C -0.13 -2.19 6.11 22.60 0.14 -2.05 16 4 C -0.06 -1.15 9.79 22.40 0.22 -0.93 16 5 C -0.14 -2.90 9.98 22.35 0.22 -2.68 16 6 C 0.11 2.42 6.60 22.50 0.15 2.57 16 7 O -0.31 -8.47 9.34 -74.49 -0.70 -9.17 16 8 C 0.10 2.48 2.75 29.85 0.08 2.56 16 9 H 0.14 2.61 6.31 -2.39 -0.02 2.60 16 10 C -0.17 -3.24 9.15 71.98 0.66 -2.58 16 11 C 0.46 16.04 7.29 71.24 0.52 16.56 16 12 O -0.53 -22.18 16.25 28.40 0.46 -21.72 16 13 O -0.35 -13.58 10.21 -51.50 -0.53 -14.10 16 14 C 0.09 3.98 5.40 71.98 0.39 4.37 16 15 C 0.03 1.68 5.35 29.85 0.16 1.84 16 16 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 17 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.92 -54.40 13.29 21.45 0.28 -54.11 16 20 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.19 -3.31 8.23 22.35 0.18 -3.12 16 25 C -0.09 -1.39 9.36 22.40 0.21 -1.18 16 26 H 0.09 0.50 7.75 -2.39 -0.02 0.49 16 27 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.54 7.74 -2.39 -0.02 0.52 16 29 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.10 1.44 6.90 -2.38 -0.02 1.42 16 32 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 35 H 0.06 2.72 8.13 -2.38 -0.02 2.70 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 39 H 0.15 2.03 5.41 -2.91 -0.02 2.01 16 40 H 0.15 1.49 5.87 -2.91 -0.02 1.47 16 Total: -1.00 -69.58 355.37 5.98 -63.59 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.04 Total: 7.96 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.66 Total: -14.37 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.28 Total: -54.11 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.76 Total: -44.99 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.27 Total: -3.34 kcal Total: -69.58 5.98 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172726919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.046 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds