Wall clock time and date at job start Tue Mar 31 2020 09:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34770 * 116.99970 * 2 1 4 4 O 1.21529 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47230 * 119.99567 * 179.97438 * 3 2 1 6 6 C 1.47057 * 127.20672 * 359.97438 * 5 3 2 7 7 C 1.34153 * 105.95366 * 179.97438 * 6 5 3 8 8 C 1.50700 * 125.42990 * 179.97438 * 7 6 5 9 9 S 1.81406 * 109.47001 * 90.00171 * 8 7 6 10 10 C 1.81402 * 102.99893 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46788 * 179.97438 * 10 9 8 12 12 C 1.50699 * 115.55333 * 304.61780 * 11 10 9 13 13 H 1.08003 * 120.00007 * 95.17466 * 12 11 10 14 14 C 1.37880 * 120.00295 * 275.17822 * 12 11 10 15 15 N 1.31511 * 119.99659 * 7.11014 * 14 12 11 16 16 Si 1.86792 * 120.00204 * 187.11056 * 14 12 11 17 17 H 1.48505 * 109.47293 * 269.99926 * 16 14 12 18 18 H 1.48499 * 109.47270 * 29.99801 * 16 14 12 19 19 H 1.48501 * 109.47395 * 150.00030 * 16 14 12 20 20 C 1.53002 * 117.50115 * 90.29300 * 11 10 9 21 21 C 1.53007 * 117.49541 * 158.95199 * 11 10 9 22 22 O 1.34218 * 109.14442 * 0.24342 * 7 6 5 23 23 C 1.33626 * 110.92331 * 359.58531 * 22 7 6 24 24 C 1.50706 * 125.81113 * 180.20128 * 23 22 7 25 25 H 1.08999 * 109.47318 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00347 * 1 2 3 27 27 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.08003 * 127.02102 * 0.03423 * 6 5 3 29 29 H 1.09000 * 109.47139 * 330.00478 * 8 7 6 30 30 H 1.09000 * 109.47440 * 209.99747 * 8 7 6 31 31 H 1.08999 * 109.47301 * 60.00173 * 10 9 8 32 32 H 1.09003 * 109.46767 * 299.99561 * 10 9 8 33 33 H 0.97008 * 120.00210 * 355.40039 * 15 14 12 34 34 H 1.08995 * 117.49846 * 215.00328 * 20 11 10 35 35 H 1.09001 * 117.49465 * 0.02562 * 20 11 10 36 36 H 1.08996 * 117.49808 * 359.97183 * 21 11 10 37 37 H 1.09005 * 117.49655 * 144.97821 * 21 11 10 38 38 H 1.09002 * 109.46776 * 270.24375 * 24 23 22 39 39 H 1.08999 * 109.46739 * 30.24530 * 24 23 22 40 40 H 1.08997 * 109.47154 * 150.24265 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5342 1.2778 0.0006 6 6 4.4834 0.1546 0.0017 7 6 5.7066 0.7056 0.0013 8 6 7.0074 -0.0552 0.0026 9 16 7.5298 -0.3628 -1.7071 10 6 9.0853 -1.2731 -1.5010 11 6 9.6630 -1.6134 -2.8763 12 6 8.7438 -2.3732 -3.7976 13 1 8.1468 -1.8414 -4.5238 14 6 8.6648 -3.7471 -3.7135 15 7 9.2816 -4.3829 -2.7415 16 14 7.6817 -4.7054 -4.9802 17 1 6.2781 -4.8447 -4.5155 18 1 7.7044 -3.9807 -6.2761 19 1 8.2809 -6.0528 -5.1559 20 6 10.6208 -0.6026 -3.5101 21 6 11.1589 -1.9245 -2.9568 22 8 5.5871 2.0424 0.0054 23 6 4.3015 2.4067 -0.0004 24 6 3.7863 3.8230 -0.0025 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.2446 -0.8987 0.0018 29 1 6.8716 -1.0062 0.5176 30 1 7.7703 0.5302 0.5158 31 1 8.8971 -2.1937 -0.9485 32 1 9.7963 -0.6575 -0.9501 33 1 9.8462 -3.8931 -2.1231 34 1 10.5860 -0.4870 -4.5933 35 1 10.8397 0.3047 -2.9470 36 1 11.7315 -1.8863 -2.0301 37 1 11.4781 -2.6789 -3.6759 38 1 3.6615 4.1656 1.0247 39 1 4.4988 4.4679 -0.5168 40 1 2.8261 3.8595 -0.5169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596321172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:59 Heat of formation + Delta-G solvation = -57.279288 kcal Electronic energy + Delta-G solvation = -22487.584497 eV Core-core repulsion = 18975.152164 eV Total energy + Delta-G solvation = -3512.432333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.76116 -40.23986 -36.93517 -36.59819 -33.32900 -33.10536 -31.89514 -29.83283 -28.11308 -27.78806 -25.43851 -24.79021 -23.49691 -21.55808 -21.35044 -19.78973 -19.46559 -17.82658 -16.97676 -16.84008 -16.51695 -16.22175 -15.86928 -15.27291 -14.32825 -14.24563 -13.88239 -13.74787 -13.66746 -13.48949 -13.41613 -13.20021 -13.13742 -12.99872 -12.59418 -12.29901 -11.99634 -11.83800 -11.70750 -11.02631 -10.96625 -10.77685 -10.69937 -10.47676 -10.11893 -9.95370 -9.67310 -9.59024 -8.58762 -8.46801 -8.35808 -8.28652 -6.94955 -6.36290 -4.08843 0.98455 1.50783 2.37212 2.53613 2.74422 2.97537 3.29134 3.45667 3.48025 3.63697 4.24130 4.51817 4.54131 4.74106 4.91340 4.98818 5.01035 5.07955 5.09646 5.24514 5.30325 5.30869 5.32468 5.47129 5.55650 5.71520 5.73293 5.89311 5.95860 6.14600 6.18751 6.24593 6.25651 6.46120 6.55886 6.79667 6.93096 7.14305 7.20884 7.61644 8.19995 8.44046 8.86140 9.64587 11.03246 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.003438 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.236511 B = 8143.093634 C = 9457.107734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.546 3.454 4 O -0.516 6.516 5 C -0.238 4.238 6 C -0.146 4.146 7 C 0.017 3.983 8 C -0.036 4.036 9 S -0.199 6.199 10 C -0.042 4.042 11 C 0.034 3.966 12 C -0.561 4.561 13 H 0.056 0.944 14 C 0.031 3.969 15 N -0.907 5.907 16 Si 1.067 2.933 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.285 1.285 20 C -0.190 4.190 21 C -0.172 4.172 22 O -0.162 6.162 23 C 0.095 3.905 24 C -0.085 4.085 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.272 0.728 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 11.134 8.533 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.393 3.607 4 O -0.407 6.407 5 C -0.240 4.240 6 C -0.168 4.168 7 C -0.032 4.032 8 C -0.184 4.184 9 S 0.031 5.969 10 C -0.190 4.190 11 C 0.032 3.968 12 C -0.599 4.599 13 H 0.074 0.926 14 C -0.175 4.175 15 N -0.541 5.541 16 Si 0.895 3.105 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.211 1.211 20 C -0.228 4.228 21 C -0.212 4.212 22 O -0.058 6.058 23 C 0.041 3.959 24 C -0.141 4.141 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.184 0.816 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.108 10.348 7.204 17.481 hybrid contribution 0.959 0.978 1.595 2.103 sum -11.150 11.327 8.799 18.167 Atomic orbital electron populations 1.23282 0.76008 1.03838 1.02489 1.86604 1.23402 1.32296 1.84209 1.19914 0.87387 0.81391 0.72038 1.90799 1.66581 1.35868 1.47462 1.20078 0.90587 0.93908 1.19438 1.22611 0.89714 0.99865 1.04579 1.21327 0.96118 0.79409 1.06333 1.21818 0.93429 1.00845 1.02265 1.87438 1.32092 1.73226 1.04136 1.23189 0.93743 0.99859 1.02218 1.18717 0.88902 0.97882 0.91281 1.21202 1.26133 0.93032 1.19559 0.92590 1.25726 0.97868 0.95131 0.98736 1.70733 1.28585 1.40316 1.14510 0.83567 0.76037 0.75654 0.75198 1.21281 1.21446 1.21119 1.22918 1.07901 0.92118 0.99817 1.22837 0.98644 0.98635 1.01107 1.83737 1.26849 1.24278 1.70969 1.22775 0.80297 0.96601 0.96229 1.20664 1.02458 0.86450 1.04497 0.91918 0.91793 0.87922 0.81600 0.87308 0.89047 0.90496 0.93006 0.91632 0.89943 0.91278 0.91505 0.89485 0.89083 0.89779 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.41 10.48 -40.68 -0.43 -4.83 16 3 C 0.55 7.55 7.95 34.38 0.27 7.82 16 4 O -0.52 -7.42 14.64 -19.29 -0.28 -7.70 16 5 C -0.24 -3.36 6.32 -103.30 -0.65 -4.01 16 6 C -0.15 -2.12 10.93 -37.45 -0.41 -2.53 16 7 C 0.02 0.25 6.54 -35.75 -0.23 0.02 16 8 C -0.04 -0.55 6.46 36.01 0.23 -0.32 16 9 S -0.20 -3.96 21.09 -107.50 -2.27 -6.23 16 10 C -0.04 -0.88 5.81 37.16 0.22 -0.66 16 11 C 0.03 0.80 1.01 -155.66 -0.16 0.64 16 12 C -0.56 -15.12 8.13 -34.44 -0.28 -15.40 16 13 H 0.06 1.58 7.82 -52.48 -0.41 1.16 16 14 C 0.03 0.84 5.39 -17.82 -0.10 0.75 16 15 N -0.91 -25.86 13.57 55.43 0.75 -25.11 16 16 Si 1.07 24.84 29.91 -169.99 -5.08 19.76 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 C -0.19 -4.06 9.93 -26.69 -0.27 -4.32 16 21 C -0.17 -3.82 8.75 -26.69 -0.23 -4.05 16 22 O -0.16 -2.35 10.52 7.71 0.08 -2.27 16 23 C 0.10 1.25 7.38 -34.93 -0.26 0.99 16 24 C -0.08 -0.80 9.89 36.01 0.36 -0.45 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 29 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.08 1.72 7.73 -51.92 -0.40 1.31 16 32 H 0.05 0.97 8.10 -51.92 -0.42 0.55 16 33 H 0.27 7.63 6.12 -40.82 -0.25 7.38 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.08 6.49 -51.93 -0.34 0.74 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -30.98 360.45 -7.92 -38.90 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.69 Total: 2.17 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.44 Total: -20.12 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.75 Total: -25.11 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.63 Total: -14.81 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.27 Total: -6.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.98 -7.92 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596321172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.378 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds