Wall clock time and date at job start Tue Mar 31 2020 09:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34770 * 116.99970 * 2 1 4 4 O 1.21529 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47230 * 119.99567 * 179.97438 * 3 2 1 6 6 C 1.47057 * 127.20672 * 359.97438 * 5 3 2 7 7 C 1.34153 * 105.95366 * 179.97438 * 6 5 3 8 8 C 1.50700 * 125.42990 * 179.97438 * 7 6 5 9 9 S 1.81406 * 109.47001 * 90.00171 * 8 7 6 10 10 C 1.81402 * 102.99893 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46788 * 179.97438 * 10 9 8 12 12 C 1.50699 * 115.55333 * 304.61780 * 11 10 9 13 13 H 1.08003 * 120.00007 * 95.17466 * 12 11 10 14 14 C 1.37880 * 120.00295 * 275.17822 * 12 11 10 15 15 N 1.31511 * 119.99659 * 7.11014 * 14 12 11 16 16 Si 1.86792 * 120.00204 * 187.11056 * 14 12 11 17 17 H 1.48505 * 109.47293 * 269.99926 * 16 14 12 18 18 H 1.48499 * 109.47270 * 29.99801 * 16 14 12 19 19 H 1.48501 * 109.47395 * 150.00030 * 16 14 12 20 20 C 1.53002 * 117.50115 * 90.29300 * 11 10 9 21 21 C 1.53007 * 117.49541 * 158.95199 * 11 10 9 22 22 O 1.34218 * 109.14442 * 0.24342 * 7 6 5 23 23 C 1.33626 * 110.92331 * 359.58531 * 22 7 6 24 24 C 1.50706 * 125.81113 * 180.20128 * 23 22 7 25 25 H 1.08999 * 109.47318 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00347 * 1 2 3 27 27 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.08003 * 127.02102 * 0.03423 * 6 5 3 29 29 H 1.09000 * 109.47139 * 330.00478 * 8 7 6 30 30 H 1.09000 * 109.47440 * 209.99747 * 8 7 6 31 31 H 1.08999 * 109.47301 * 60.00173 * 10 9 8 32 32 H 1.09003 * 109.46767 * 299.99561 * 10 9 8 33 33 H 0.97008 * 120.00210 * 355.40039 * 15 14 12 34 34 H 1.08995 * 117.49846 * 215.00328 * 20 11 10 35 35 H 1.09001 * 117.49465 * 0.02562 * 20 11 10 36 36 H 1.08996 * 117.49808 * 359.97183 * 21 11 10 37 37 H 1.09005 * 117.49655 * 144.97821 * 21 11 10 38 38 H 1.09002 * 109.46776 * 270.24375 * 24 23 22 39 39 H 1.08999 * 109.46739 * 30.24530 * 24 23 22 40 40 H 1.08997 * 109.47154 * 150.24265 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5342 1.2778 0.0006 6 6 4.4834 0.1546 0.0017 7 6 5.7066 0.7056 0.0013 8 6 7.0074 -0.0552 0.0026 9 16 7.5298 -0.3628 -1.7071 10 6 9.0853 -1.2731 -1.5010 11 6 9.6630 -1.6134 -2.8763 12 6 8.7438 -2.3732 -3.7976 13 1 8.1468 -1.8414 -4.5238 14 6 8.6648 -3.7471 -3.7135 15 7 9.2816 -4.3829 -2.7415 16 14 7.6817 -4.7054 -4.9802 17 1 6.2781 -4.8447 -4.5155 18 1 7.7044 -3.9807 -6.2761 19 1 8.2809 -6.0528 -5.1559 20 6 10.6208 -0.6026 -3.5101 21 6 11.1589 -1.9245 -2.9568 22 8 5.5871 2.0424 0.0054 23 6 4.3015 2.4067 -0.0004 24 6 3.7863 3.8230 -0.0025 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.2446 -0.8987 0.0018 29 1 6.8716 -1.0062 0.5176 30 1 7.7703 0.5302 0.5158 31 1 8.8971 -2.1937 -0.9485 32 1 9.7963 -0.6575 -0.9501 33 1 9.8462 -3.8931 -2.1231 34 1 10.5860 -0.4870 -4.5933 35 1 10.8397 0.3047 -2.9470 36 1 11.7315 -1.8863 -2.0301 37 1 11.4781 -2.6789 -3.6759 38 1 3.6615 4.1656 1.0247 39 1 4.4988 4.4679 -0.5168 40 1 2.8261 3.8595 -0.5169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596321172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:58 Heat of formation + Delta-G solvation = -72.240917 kcal Electronic energy + Delta-G solvation = -22488.233282 eV Core-core repulsion = 18975.152164 eV Total energy + Delta-G solvation = -3513.081118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.83822 -41.22934 -38.74151 -37.57663 -34.43008 -34.12426 -33.93427 -30.81965 -29.53749 -28.83158 -26.96783 -26.33865 -24.49908 -23.09241 -22.61734 -21.48110 -20.69697 -18.96589 -18.57789 -17.93474 -17.76608 -17.23526 -16.91492 -16.68155 -15.90738 -15.61920 -15.36776 -15.28629 -15.13110 -14.79078 -14.35085 -14.31490 -14.18597 -13.98497 -13.81003 -13.61430 -13.43778 -13.03921 -12.92396 -12.67328 -12.63488 -12.21210 -11.94921 -11.83838 -11.72130 -11.46924 -11.21029 -10.94365 -10.49269 -10.39231 -10.10796 -9.55837 -8.52458 -8.47964 -6.21280 -0.06338 0.24693 1.24050 1.42740 1.55829 1.62430 1.76571 1.79530 1.80760 1.92239 2.59757 3.18224 3.26480 3.31159 3.55347 3.75629 3.96722 4.02249 4.06198 4.24437 4.27101 4.28433 4.32731 4.43954 4.47462 4.50248 4.55858 4.57329 4.67600 4.73577 4.75857 4.84195 5.04382 5.04723 5.12208 5.28317 5.38038 5.45213 5.85042 6.18973 6.29237 6.61751 6.76639 7.56431 8.91593 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.003438 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.236511 B = 8143.093634 C = 9457.107734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.545 3.455 4 O -0.527 6.527 5 C -0.261 4.261 6 C -0.145 4.145 7 C 0.000 4.000 8 C -0.015 4.015 9 S -0.252 6.252 10 C -0.027 4.027 11 C 0.004 3.996 12 C -0.566 4.566 13 H 0.034 0.966 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 1.103 2.897 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.283 1.283 20 C -0.173 4.173 21 C -0.169 4.169 22 O -0.168 6.168 23 C 0.105 3.895 24 C -0.083 4.083 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.171 0.829 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 12.316 9.369 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.393 3.607 4 O -0.419 6.419 5 C -0.263 4.263 6 C -0.167 4.167 7 C -0.049 4.049 8 C -0.162 4.162 9 S -0.022 6.022 10 C -0.176 4.176 11 C 0.003 3.997 12 C -0.604 4.604 13 H 0.053 0.947 14 C -0.211 4.211 15 N -0.567 5.567 16 Si 0.927 3.073 17 H -0.204 1.204 18 H -0.204 1.204 19 H -0.209 1.209 20 C -0.210 4.210 21 C -0.209 4.209 22 O -0.065 6.065 23 C 0.050 3.950 24 C -0.139 4.139 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.188 0.812 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.718 11.530 8.031 18.952 hybrid contribution 1.043 0.701 1.367 1.857 sum -11.675 12.231 9.398 19.345 Atomic orbital electron populations 1.23607 0.73929 1.05829 1.02933 1.86586 1.25526 1.31737 1.83875 1.19891 0.87319 0.81645 0.71874 1.90782 1.66766 1.36167 1.48184 1.20278 0.91057 0.94226 1.20768 1.22789 0.89946 1.00366 1.03647 1.21267 0.96012 0.79799 1.07809 1.21752 0.94062 1.01949 0.98429 1.87497 1.32271 1.72940 1.09484 1.22922 0.94637 0.99534 1.00460 1.18807 0.89139 0.99320 0.92455 1.21355 1.26175 0.93350 1.19545 0.94734 1.26760 0.98425 0.96348 0.99587 1.70818 1.29951 1.40410 1.15480 0.83091 0.75408 0.74832 0.73976 1.20442 1.20437 1.20895 1.22923 1.05829 0.92614 0.99656 1.22768 0.97949 0.98576 1.01594 1.83738 1.27581 1.24002 1.71171 1.23470 0.79645 0.97901 0.93947 1.20840 1.02442 0.84582 1.06026 0.91207 0.91638 0.85246 0.81193 0.86089 0.86927 0.92439 0.90469 0.92265 0.90706 0.88583 0.89246 0.91792 0.86945 0.87876 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.36 -8.78 10.48 -56.81 -0.60 -9.38 16 3 C 0.55 14.61 7.95 70.19 0.56 15.17 16 4 O -0.53 -14.59 14.64 19.74 0.29 -14.30 16 5 C -0.26 -7.13 6.32 -19.01 -0.12 -7.25 16 6 C -0.15 -4.11 10.93 23.65 0.26 -3.85 16 7 C 0.00 -0.01 6.54 24.75 0.16 0.16 16 8 C -0.02 -0.43 6.46 71.24 0.46 0.03 16 9 S -0.25 -9.88 21.09 -56.49 -1.19 -11.07 16 10 C -0.03 -1.12 5.81 71.98 0.42 -0.70 16 11 C 0.00 0.20 1.01 -52.93 -0.05 0.15 16 12 C -0.57 -30.85 8.13 25.60 0.21 -30.65 16 13 H 0.03 1.98 7.82 -2.91 -0.02 1.96 16 14 C -0.01 -0.59 5.39 84.66 0.46 -0.13 16 15 N -0.93 -53.60 13.57 21.45 0.29 -53.30 16 16 Si 1.10 50.38 29.91 68.60 2.05 52.43 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 C -0.17 -7.16 9.93 30.62 0.30 -6.86 16 21 C -0.17 -7.38 8.75 30.62 0.27 -7.11 16 22 O -0.17 -4.63 10.52 4.68 0.05 -4.58 16 23 C 0.10 2.58 7.38 25.28 0.19 2.77 16 24 C -0.08 -1.39 9.89 71.24 0.70 -0.68 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 29 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.06 2.56 7.73 -2.39 -0.02 2.54 16 32 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 33 H 0.27 15.14 6.12 -92.70 -0.57 14.57 16 34 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.06 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.88 6.49 -2.39 -0.02 1.87 16 Total: -1.00 -66.63 360.45 7.14 -59.49 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.24 Total: 18.01 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 5.01 Total: -37.30 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.29 Total: -53.30 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.26 Total: -28.25 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -1.19 Total: -11.07 kcal Total: -66.63 7.14 -59.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596321172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.752 kcal (2) G-P(sol) polarization free energy of solvation -66.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds