Wall clock time and date at job start Tue Mar 31 2020 10:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36692 * 119.99889 * 2 1 4 4 H 1.08001 * 119.99986 * 148.57946 * 3 2 1 5 5 C 1.39171 * 120.00145 * 328.84892 * 3 2 1 6 6 N 1.31285 * 120.00158 * 162.09143 * 5 3 2 7 7 Si 1.86801 * 119.99873 * 342.09904 * 5 3 2 8 8 H 1.48495 * 109.47323 * 92.41849 * 7 5 3 9 9 H 1.48499 * 109.46813 * 212.41756 * 7 5 3 10 10 H 1.48498 * 109.46829 * 332.41949 * 7 5 3 11 11 C 1.34776 * 120.00312 * 179.97438 * 2 1 3 12 12 O 1.21551 * 120.00419 * 175.72228 * 11 2 1 13 13 C 1.48172 * 119.99676 * 355.72506 * 11 2 1 14 14 N 1.33207 * 120.52541 * 5.27662 * 13 11 2 15 15 C 1.32214 * 120.65165 * 179.97438 * 14 13 11 16 16 N 1.38485 * 119.10954 * 179.97438 * 15 14 13 17 17 C 1.48534 * 111.00273 * 62.60258 * 16 15 14 18 18 C 1.54940 * 103.22861 * 159.71985 * 17 16 15 19 19 C 1.54594 * 102.92075 * 322.58610 * 18 17 16 20 20 C 1.47906 * 111.00064 * 179.97438 * 16 15 14 21 21 N 1.32604 * 121.77594 * 359.97438 * 15 14 13 22 22 C 1.32130 * 121.00065 * 0.02562 * 21 15 14 23 23 C 1.38898 * 119.24023 * 359.74830 * 22 21 15 24 24 Cl 1.73597 * 120.80971 * 180.27073 * 23 22 21 25 25 H 1.08995 * 109.47199 * 356.37251 * 1 2 3 26 26 H 1.08994 * 109.47020 * 116.38019 * 1 2 3 27 27 H 1.09002 * 109.46884 * 236.37834 * 1 2 3 28 28 H 0.96995 * 120.00156 * 180.02562 * 6 5 3 29 29 H 1.08997 * 110.66978 * 278.15645 * 17 16 15 30 30 H 1.09004 * 110.66339 * 41.28303 * 17 16 15 31 31 H 1.09005 * 110.72258 * 204.22931 * 18 17 16 32 32 H 1.08993 * 110.87997 * 81.01408 * 18 17 16 33 33 H 1.09007 * 110.30952 * 263.04141 * 19 18 17 34 34 H 1.09000 * 110.31147 * 140.87370 * 19 18 17 35 35 H 1.09002 * 109.91543 * 333.50899 * 20 16 15 36 36 H 1.08997 * 109.91892 * 94.79962 * 20 16 15 37 37 H 1.08001 * 120.38126 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1484 1.1838 0.0000 4 1 3.1097 1.2524 0.4876 5 6 1.6031 2.3022 -0.6235 6 7 2.0586 3.5000 -0.3385 7 14 0.2228 2.0989 -1.8656 8 1 -1.0863 2.2173 -1.1748 9 1 0.3319 3.1549 -2.9039 10 1 0.3257 0.7628 -2.5056 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1687 -0.0780 13 6 1.4012 -2.4485 0.0968 14 7 0.0693 -2.4655 0.0778 15 6 -0.5915 -3.6075 0.1630 16 7 -1.9760 -3.5880 0.1407 17 6 -2.4802 -3.0467 -1.1474 18 6 -3.9348 -3.5765 -1.2095 19 6 -3.8136 -4.9918 -0.5994 20 6 -2.5272 -4.9564 0.2458 21 7 0.0357 -4.7710 0.2692 22 6 1.3553 -4.8329 0.2945 23 6 2.0915 -3.6586 0.2030 24 17 3.8270 -3.6933 0.2251 25 1 -0.3633 1.0256 0.0650 26 1 -0.3633 -0.4566 -0.9206 27 1 -0.3633 -0.5690 0.8558 28 1 1.6783 4.2795 -0.7728 29 1 -2.4677 -1.9569 -1.1380 30 1 -1.8944 -3.4319 -1.9820 31 1 -4.2822 -3.6298 -2.2414 32 1 -4.6007 -2.9545 -0.6115 33 1 -3.7268 -5.7381 -1.3891 34 1 -4.6757 -5.2067 0.0321 35 1 -1.8077 -5.6773 -0.1425 36 1 -2.7603 -5.1840 1.2859 37 1 1.8559 -5.7860 0.3809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604526173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:20 Heat of formation + Delta-G solvation = 70.615470 kcal Electronic energy + Delta-G solvation = -23923.251244 eV Core-core repulsion = 20343.073545 eV Total energy + Delta-G solvation = -3580.177699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30123 -39.06899 -38.10962 -36.23340 -34.93349 -33.78898 -32.86911 -32.13885 -29.51467 -29.16981 -26.60103 -26.21018 -24.30566 -23.76311 -21.63728 -21.14837 -19.69177 -17.90109 -17.54215 -17.10000 -16.22953 -16.09190 -15.72973 -15.51084 -15.28843 -14.37108 -14.02679 -13.95066 -13.78198 -13.27605 -12.88153 -12.62629 -12.59275 -12.36655 -12.15490 -12.11139 -11.72301 -11.60255 -11.43808 -11.16149 -10.89161 -10.82816 -10.72563 -10.54581 -10.33949 -9.99433 -9.75053 -9.28841 -9.23247 -8.39931 -8.26448 -7.90497 -6.62999 -4.05667 0.68352 0.96059 2.36784 2.96196 3.09804 3.16025 3.17849 3.40140 3.90943 3.98532 4.11454 4.12916 4.34347 4.56660 4.66588 4.79694 4.86705 4.97158 5.05719 5.09942 5.23439 5.52671 5.55159 5.58572 5.70339 5.78878 5.80521 5.95761 6.02911 6.05470 6.29255 6.37443 6.54856 6.71583 7.08154 7.29855 8.03643 8.08367 8.32092 8.74825 9.08674 9.61594 10.46407 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.006426 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.819810 B = 4356.570643 C = 6476.089306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.420 5.420 3 C -0.298 4.298 4 H 0.117 0.883 5 C 0.057 3.943 6 N -0.842 5.842 7 Si 0.893 3.107 8 H -0.270 1.270 9 H -0.287 1.287 10 H -0.262 1.262 11 C 0.471 3.529 12 O -0.544 6.544 13 C 0.188 3.812 14 N -0.493 5.493 15 C 0.475 3.525 16 N -0.443 5.443 17 C 0.051 3.949 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.038 3.962 21 N -0.546 5.546 22 C 0.176 3.824 23 C -0.139 4.139 24 Cl -0.011 7.011 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.281 0.719 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 -15.910 -1.507 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.137 5.137 3 C -0.427 4.427 4 H 0.135 0.865 5 C -0.152 4.152 6 N -0.477 5.477 7 Si 0.719 3.281 8 H -0.197 1.197 9 H -0.213 1.213 10 H -0.186 1.186 11 C 0.260 3.740 12 O -0.426 6.426 13 C 0.039 3.961 14 N -0.215 5.215 15 C 0.119 3.881 16 N -0.164 5.164 17 C -0.075 4.075 18 C -0.162 4.162 19 C -0.170 4.170 20 C -0.089 4.089 21 N -0.267 5.267 22 C 0.009 3.991 23 C -0.174 4.174 24 Cl 0.018 6.982 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.717 -15.301 -1.151 19.306 hybrid contribution 0.475 -0.423 -1.010 1.193 sum -11.242 -15.723 -2.161 19.450 Atomic orbital electron populations 1.22326 0.81657 1.01209 1.02399 1.43714 1.05338 1.05403 1.59268 1.19388 1.06174 0.83578 1.33521 0.86512 1.25475 0.98207 0.94637 0.96909 1.69646 1.41150 0.98057 1.38867 0.86795 0.81189 0.78811 0.81274 1.19668 1.21341 1.18628 1.17294 0.87097 0.81569 0.88064 1.90753 1.11762 1.84833 1.55214 1.22089 0.88142 0.95479 0.90411 1.68844 1.07569 1.27644 1.17454 1.21300 0.91465 0.84495 0.90863 1.61353 1.00966 1.21214 1.32846 1.23282 0.94907 1.01901 0.87443 1.22534 0.95829 0.96262 1.01587 1.22447 0.97758 0.97406 0.99378 1.22945 0.95898 0.88294 1.01760 1.68210 1.10023 1.28575 1.19910 1.22986 0.88360 0.97284 0.90482 1.22541 0.89379 0.95867 1.09586 1.98396 1.04982 1.98530 1.96339 0.91495 0.92495 0.90599 0.90891 0.88290 0.92844 0.90369 0.90101 0.91137 0.90589 0.89740 0.89773 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 6.68 59.85 0.40 1.84 16 2 N -0.42 -10.49 2.71 -123.18 -0.33 -10.83 16 3 C -0.30 -8.30 9.51 -15.04 -0.14 -8.44 16 4 H 0.12 3.60 7.82 -52.49 -0.41 3.19 16 5 C 0.06 1.52 5.24 -17.44 -0.09 1.43 16 6 N -0.84 -23.34 13.95 55.51 0.77 -22.57 16 7 Si 0.89 20.17 24.35 -169.99 -4.14 16.03 16 8 H -0.27 -5.66 6.65 56.52 0.38 -5.28 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.26 -5.95 6.63 56.52 0.37 -5.58 16 11 C 0.47 11.54 7.61 -12.18 -0.09 11.45 16 12 O -0.54 -14.52 13.97 5.32 0.07 -14.45 16 13 C 0.19 3.86 6.70 -82.64 -0.55 3.30 16 14 N -0.49 -9.27 5.96 -10.48 -0.06 -9.33 16 15 C 0.47 7.74 6.98 -322.91 -2.25 5.49 16 16 N -0.44 -6.10 5.36 -171.46 -0.92 -7.02 16 17 C 0.05 0.60 6.31 -1.90 -0.01 0.59 16 18 C -0.12 -1.06 7.06 -24.87 -0.18 -1.24 16 19 C -0.13 -1.06 6.93 -25.39 -0.18 -1.24 16 20 C 0.04 0.41 6.33 -2.77 -0.02 0.40 16 21 N -0.55 -8.21 8.12 -13.91 -0.11 -8.32 16 22 C 0.18 2.53 11.13 -17.18 -0.19 2.34 16 23 C -0.14 -2.47 6.40 -38.78 -0.25 -2.71 16 24 Cl -0.01 -0.20 26.24 -51.86 -1.36 -1.56 16 25 H 0.07 1.44 4.46 -51.93 -0.23 1.21 16 26 H 0.06 1.16 6.41 -51.93 -0.33 0.83 16 27 H 0.08 1.53 6.69 -51.93 -0.35 1.18 16 28 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.66 7.99 -51.93 -0.42 0.25 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.97 6.46 -51.93 -0.34 0.64 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.18 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -30.57 312.99 -9.14 -39.71 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.22 Total: 0.43 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -3.56 Total: 13.20 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.65 Total: -58.07 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.07 Total: -14.45 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.14 Total: 16.03 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.36 Total: -1.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.57 -9.14 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604526173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.323 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds