Wall clock time and date at job start Tue Mar 31 2020 10:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36692 * 119.99889 * 2 1 4 4 H 1.08001 * 119.99986 * 148.57946 * 3 2 1 5 5 C 1.39171 * 120.00145 * 328.84892 * 3 2 1 6 6 N 1.31285 * 120.00158 * 162.09143 * 5 3 2 7 7 Si 1.86801 * 119.99873 * 342.09904 * 5 3 2 8 8 H 1.48495 * 109.47323 * 92.41849 * 7 5 3 9 9 H 1.48499 * 109.46813 * 212.41756 * 7 5 3 10 10 H 1.48498 * 109.46829 * 332.41949 * 7 5 3 11 11 C 1.34776 * 120.00312 * 179.97438 * 2 1 3 12 12 O 1.21551 * 120.00419 * 175.72228 * 11 2 1 13 13 C 1.48172 * 119.99676 * 355.72506 * 11 2 1 14 14 N 1.33207 * 120.52541 * 5.27662 * 13 11 2 15 15 C 1.32214 * 120.65165 * 179.97438 * 14 13 11 16 16 N 1.38485 * 119.10954 * 179.97438 * 15 14 13 17 17 C 1.48534 * 111.00273 * 62.60258 * 16 15 14 18 18 C 1.54940 * 103.22861 * 159.71985 * 17 16 15 19 19 C 1.54594 * 102.92075 * 322.58610 * 18 17 16 20 20 C 1.47906 * 111.00064 * 179.97438 * 16 15 14 21 21 N 1.32604 * 121.77594 * 359.97438 * 15 14 13 22 22 C 1.32130 * 121.00065 * 0.02562 * 21 15 14 23 23 C 1.38898 * 119.24023 * 359.74830 * 22 21 15 24 24 Cl 1.73597 * 120.80971 * 180.27073 * 23 22 21 25 25 H 1.08995 * 109.47199 * 356.37251 * 1 2 3 26 26 H 1.08994 * 109.47020 * 116.38019 * 1 2 3 27 27 H 1.09002 * 109.46884 * 236.37834 * 1 2 3 28 28 H 0.96995 * 120.00156 * 180.02562 * 6 5 3 29 29 H 1.08997 * 110.66978 * 278.15645 * 17 16 15 30 30 H 1.09004 * 110.66339 * 41.28303 * 17 16 15 31 31 H 1.09005 * 110.72258 * 204.22931 * 18 17 16 32 32 H 1.08993 * 110.87997 * 81.01408 * 18 17 16 33 33 H 1.09007 * 110.30952 * 263.04141 * 19 18 17 34 34 H 1.09000 * 110.31147 * 140.87370 * 19 18 17 35 35 H 1.09002 * 109.91543 * 333.50899 * 20 16 15 36 36 H 1.08997 * 109.91892 * 94.79962 * 20 16 15 37 37 H 1.08001 * 120.38126 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1484 1.1838 0.0000 4 1 3.1097 1.2524 0.4876 5 6 1.6031 2.3022 -0.6235 6 7 2.0586 3.5000 -0.3385 7 14 0.2228 2.0989 -1.8656 8 1 -1.0863 2.2173 -1.1748 9 1 0.3319 3.1549 -2.9039 10 1 0.3257 0.7628 -2.5056 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1687 -0.0780 13 6 1.4012 -2.4485 0.0968 14 7 0.0693 -2.4655 0.0778 15 6 -0.5915 -3.6075 0.1630 16 7 -1.9760 -3.5880 0.1407 17 6 -2.4802 -3.0467 -1.1474 18 6 -3.9348 -3.5765 -1.2095 19 6 -3.8136 -4.9918 -0.5994 20 6 -2.5272 -4.9564 0.2458 21 7 0.0357 -4.7710 0.2692 22 6 1.3553 -4.8329 0.2945 23 6 2.0915 -3.6586 0.2030 24 17 3.8270 -3.6933 0.2251 25 1 -0.3633 1.0256 0.0650 26 1 -0.3633 -0.4566 -0.9206 27 1 -0.3633 -0.5690 0.8558 28 1 1.6783 4.2795 -0.7728 29 1 -2.4677 -1.9569 -1.1380 30 1 -1.8944 -3.4319 -1.9820 31 1 -4.2822 -3.6298 -2.2414 32 1 -4.6007 -2.9545 -0.6115 33 1 -3.7268 -5.7381 -1.3891 34 1 -4.6757 -5.2067 0.0321 35 1 -1.8077 -5.6773 -0.1425 36 1 -2.7603 -5.1840 1.2859 37 1 1.8559 -5.7860 0.3809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604526173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:19 Heat of formation + Delta-G solvation = 51.087296 kcal Electronic energy + Delta-G solvation = -23924.098049 eV Core-core repulsion = 20343.073545 eV Total energy + Delta-G solvation = -3581.024504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64187 -40.58767 -39.45441 -37.64910 -36.86476 -35.25581 -34.11132 -33.90900 -30.69542 -30.02829 -28.43106 -27.92082 -25.88319 -24.99562 -22.83200 -22.00711 -21.16312 -19.42747 -19.08079 -18.74734 -17.67117 -17.55474 -17.04704 -17.01348 -16.65027 -15.83687 -15.70876 -15.30178 -14.97358 -14.55543 -14.33488 -14.18908 -14.11066 -13.87668 -13.60718 -13.31400 -12.96544 -12.77767 -12.63356 -12.41840 -12.22720 -12.20715 -12.06569 -11.96419 -11.81947 -11.41563 -11.17510 -11.10395 -10.77628 -10.01540 -9.89143 -9.49254 -8.62844 -6.19217 -0.77368 -0.33710 0.97425 1.18841 1.28593 1.41125 1.74095 1.98307 2.10432 2.31929 2.50302 2.80133 2.95060 3.33000 3.39966 3.54700 3.68854 3.80073 4.07579 4.27365 4.29493 4.32241 4.49280 4.53522 4.61022 4.84433 4.87223 4.90201 4.97092 5.04094 5.14894 5.24191 5.34970 5.38969 5.52403 5.87026 5.90449 6.35114 6.70698 6.79340 7.09458 7.65913 8.52292 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.006426 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.819810 B = 4356.570643 C = 6476.089306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.439 5.439 3 C -0.332 4.332 4 H 0.062 0.938 5 C 0.017 3.983 6 N -0.892 5.892 7 Si 0.955 3.045 8 H -0.237 1.237 9 H -0.282 1.282 10 H -0.264 1.264 11 C 0.474 3.526 12 O -0.573 6.573 13 C 0.170 3.830 14 N -0.505 5.505 15 C 0.474 3.526 16 N -0.452 5.452 17 C 0.044 3.956 18 C -0.116 4.116 19 C -0.124 4.124 20 C 0.035 3.965 21 N -0.529 5.529 22 C 0.204 3.796 23 C -0.146 4.146 24 Cl -0.015 7.015 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.287 0.713 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 -19.333 -2.370 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.157 5.157 3 C -0.461 4.461 4 H 0.080 0.920 5 C -0.187 4.187 6 N -0.528 5.528 7 Si 0.777 3.223 8 H -0.161 1.161 9 H -0.209 1.209 10 H -0.188 1.188 11 C 0.262 3.738 12 O -0.456 6.456 13 C 0.021 3.979 14 N -0.227 5.227 15 C 0.118 3.882 16 N -0.173 5.173 17 C -0.081 4.081 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.091 4.091 21 N -0.249 5.249 22 C 0.034 3.966 23 C -0.181 4.181 24 Cl 0.014 6.986 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.161 -18.706 -2.000 24.161 hybrid contribution 1.530 0.275 -0.638 1.681 sum -13.631 -18.431 -2.638 23.075 Atomic orbital electron populations 1.22323 0.79442 1.01276 1.03366 1.43710 1.06602 1.04562 1.60864 1.18902 1.05463 0.85784 1.35912 0.92015 1.26188 1.00937 0.93691 0.97933 1.69737 1.43579 0.98954 1.40544 0.85834 0.79373 0.78469 0.78606 1.16121 1.20857 1.18830 1.17976 0.87105 0.82915 0.85761 1.90711 1.13493 1.86037 1.55352 1.21498 0.89172 0.94280 0.92935 1.68683 1.06741 1.29304 1.17991 1.21669 0.92627 0.83998 0.89881 1.61410 0.99247 1.23109 1.33557 1.23401 0.97033 1.01450 0.86254 1.22546 0.93396 0.96353 1.03067 1.22450 0.96778 0.97376 0.99552 1.23095 0.97027 0.86338 1.02678 1.68427 1.10108 1.27693 1.18654 1.23735 0.87869 0.97760 0.87186 1.22734 0.89415 0.96028 1.09876 1.98400 1.05343 1.98503 1.96353 0.91751 0.91280 0.89705 0.90304 0.89319 0.93327 0.88368 0.89633 0.89733 0.88832 0.90150 0.89404 0.75989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.31 6.68 127.77 0.85 4.16 16 2 N -0.44 -22.71 2.71 -661.90 -1.80 -24.51 16 3 C -0.33 -19.74 9.51 84.16 0.80 -18.94 16 4 H 0.06 4.21 7.82 -2.91 -0.02 4.19 16 5 C 0.02 0.97 5.24 85.00 0.45 1.41 16 6 N -0.89 -52.00 13.95 21.70 0.30 -51.69 16 7 Si 0.95 41.87 24.35 68.60 1.67 43.54 16 8 H -0.24 -9.08 6.65 99.48 0.66 -8.42 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.26 -11.53 6.63 99.48 0.66 -10.87 16 11 C 0.47 23.89 7.61 86.88 0.66 24.55 16 12 O -0.57 -31.97 13.97 -3.87 -0.05 -32.02 16 13 C 0.17 6.86 6.70 41.94 0.28 7.14 16 14 N -0.51 -18.20 5.96 -187.08 -1.12 -19.32 16 15 C 0.47 14.15 6.98 261.52 1.83 15.98 16 16 N -0.45 -11.07 5.36 -696.38 -3.73 -14.80 16 17 C 0.04 0.92 6.31 86.65 0.55 1.47 16 18 C -0.12 -1.51 7.06 31.80 0.22 -1.29 16 19 C -0.12 -1.43 6.93 31.46 0.22 -1.21 16 20 C 0.03 0.62 6.33 86.43 0.55 1.17 16 21 N -0.53 -13.92 8.12 -197.91 -1.61 -15.52 16 22 C 0.20 5.08 11.13 84.81 0.94 6.03 16 23 C -0.15 -4.91 6.40 22.79 0.15 -4.76 16 24 Cl -0.01 -0.51 26.24 -2.72 -0.07 -0.58 16 25 H 0.06 2.73 4.46 -2.39 -0.01 2.72 16 26 H 0.07 2.73 6.41 -2.39 -0.02 2.71 16 27 H 0.08 3.38 6.69 -2.39 -0.02 3.37 16 28 H 0.29 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.06 7.99 -2.39 -0.02 1.04 16 31 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.52 6.46 -2.39 -0.02 1.50 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.22 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -71.59 312.99 2.11 -69.48 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.02 Total: 9.73 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 7.49 Total: 35.70 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -7.95 Total: -125.84 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.67 Total: 43.54 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -71.59 2.11 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604526173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.564 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds