Wall clock time and date at job start Tue Mar 31 2020 09:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.08996 * 109.47282 * 305.54485 * 3 2 1 5 5 S 1.81395 * 109.47031 * 185.54273 * 3 2 1 6 6 C 1.81403 * 102.99832 * 69.18651 * 5 3 2 7 7 C 1.50701 * 109.46780 * 65.54330 * 3 2 1 8 8 O 1.20825 * 120.00502 * 35.00046 * 7 3 2 9 9 O 1.34231 * 119.99825 * 214.99866 * 7 3 2 10 10 C 1.45197 * 117.00092 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93511 * 269.72648 * 11 10 9 13 13 C 1.38095 * 120.07033 * 179.72446 * 12 11 10 14 14 C 1.38880 * 119.93136 * 0.57081 * 13 12 11 15 15 O 1.35750 * 120.07282 * 179.68493 * 14 13 12 16 16 C 1.34834 * 117.00218 * 174.30292 * 15 14 13 17 17 H 1.07998 * 119.99994 * 5.06630 * 16 15 14 18 18 C 1.38650 * 119.99649 * 185.06730 * 16 15 14 19 19 N 1.31561 * 119.99456 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00470 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47318 * 89.99773 * 20 18 16 22 22 H 1.48503 * 109.47186 * 209.99958 * 20 18 16 23 23 H 1.48503 * 109.47045 * 329.99849 * 20 18 16 24 24 C 1.38880 * 119.85854 * 359.70664 * 14 13 12 25 25 C 1.38092 * 119.93406 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.46754 * 174.95713 * 1 2 3 27 27 H 1.08990 * 109.47210 * 54.95100 * 1 2 3 28 28 H 1.09000 * 109.46505 * 294.94914 * 1 2 3 29 29 H 1.08996 * 109.47326 * 120.00406 * 2 1 3 30 30 H 1.09004 * 109.46574 * 240.00098 * 2 1 3 31 31 H 1.08996 * 109.46900 * 304.93730 * 6 5 3 32 32 H 1.08998 * 109.47056 * 64.94158 * 6 5 3 33 33 H 1.09004 * 109.46836 * 184.93592 * 6 5 3 34 34 H 1.08998 * 109.47279 * 300.00011 * 10 9 7 35 35 H 1.09006 * 109.46942 * 59.99851 * 10 9 7 36 36 H 1.08000 * 119.96413 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03558 * 180.27856 * 13 12 11 38 38 H 0.97003 * 120.00085 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03372 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.97146 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 -0.8361 5 16 3.8465 1.4452 -0.1652 6 6 4.1014 0.8712 -1.8670 7 6 1.6529 2.1121 1.2934 8 8 1.6318 1.4760 2.3204 9 8 1.3314 3.4153 1.3044 10 6 0.9691 3.9940 2.5858 11 6 0.6430 5.4540 2.4035 12 6 1.6408 6.4041 2.5232 13 6 1.3463 7.7423 2.3511 14 6 0.0442 8.1345 2.0691 15 8 -0.2498 9.4497 1.9057 16 6 -1.5052 9.7528 1.5182 17 1 -2.2468 8.9725 1.4315 18 6 -1.8439 11.0663 1.2309 19 7 -3.0686 11.3619 0.8523 20 14 -0.5609 12.4158 1.3800 21 1 0.1434 12.5748 0.0824 22 1 -1.2260 13.6932 1.7422 23 1 0.4198 12.0521 2.4342 24 6 -0.9567 7.1784 1.9552 25 6 -0.6545 5.8413 2.1220 26 1 -0.3633 -1.0237 -0.0903 27 1 -0.3633 0.5901 -0.8412 28 1 -0.3632 0.4335 0.9318 29 1 1.8935 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.5962 -0.0843 -2.0077 32 1 3.6929 1.6042 -2.5627 33 1 5.1685 0.7490 -2.0532 34 1 0.0987 3.4743 2.9862 35 1 1.8039 3.8924 3.2794 36 1 2.6522 6.0989 2.7476 37 1 2.1268 8.4834 2.4402 38 1 -3.3058 12.2809 0.6517 39 1 -1.9703 7.4803 1.7365 40 1 -1.4323 5.0972 2.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767669725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:56 Heat of formation + Delta-G solvation = -94.597098 kcal Electronic energy + Delta-G solvation = -22358.964382 eV Core-core repulsion = 18844.913827 eV Total energy + Delta-G solvation = -3514.050555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62732 -39.26571 -37.30669 -36.26573 -34.91059 -32.52906 -30.88427 -30.34608 -29.35476 -28.59775 -26.25584 -24.75121 -23.10459 -22.19381 -20.70682 -20.56023 -18.19126 -18.00271 -17.49506 -17.17474 -16.66219 -15.95528 -15.01745 -14.99355 -14.58175 -14.28626 -14.17740 -14.04794 -13.89966 -13.73886 -13.40911 -13.30912 -12.89509 -12.83549 -12.67406 -12.32608 -12.22494 -12.11791 -11.87188 -11.50074 -11.32539 -11.06802 -10.86419 -10.78624 -10.56144 -10.54402 -10.31322 -10.21530 -9.47898 -8.95478 -8.36777 -8.10947 -7.49524 -6.50145 -4.16905 0.79780 1.80248 2.00598 2.04822 2.41068 2.79127 3.17636 3.21492 3.35511 4.11206 4.17058 4.31230 4.53067 4.67892 4.72903 4.74669 4.78611 4.89738 5.01326 5.02417 5.10611 5.14282 5.24076 5.33074 5.48456 5.54487 5.57914 5.67024 5.73803 5.86715 6.03266 6.22173 6.39191 6.44772 6.67786 6.91442 7.11097 7.18000 7.49317 7.64246 7.70830 7.94101 8.84366 9.44855 10.56969 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.002557 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.167234 B =10947.007110 C =11200.638454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.064 4.064 4 H 0.120 0.880 5 S -0.211 6.211 6 C -0.126 4.126 7 C 0.483 3.517 8 O -0.497 6.497 9 O -0.342 6.342 10 C 0.128 3.872 11 C -0.196 4.196 12 C -0.049 4.049 13 C -0.195 4.195 14 C 0.170 3.830 15 O -0.211 6.211 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.225 4.225 25 C -0.046 4.046 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.136 0.864 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -20.629 -3.854 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.148 4.148 3 C -0.193 4.193 4 H 0.138 0.862 5 S 0.016 5.984 6 C -0.295 4.295 7 C 0.324 3.676 8 O -0.385 6.385 9 O -0.259 6.259 10 C 0.056 3.944 11 C -0.197 4.197 12 C -0.067 4.067 13 C -0.214 4.214 14 C 0.117 3.883 15 O -0.115 6.115 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.512 5.512 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.244 4.244 25 C -0.064 4.064 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.018 -20.073 -2.824 23.072 hybrid contribution -0.688 0.338 -0.896 1.179 sum 10.330 -19.736 -3.720 22.584 Atomic orbital electron populations 1.21875 0.94521 1.02640 1.02550 1.21793 0.96916 0.91856 1.04277 1.23046 0.97380 1.00414 0.98505 0.86213 1.87189 1.03466 1.88959 1.18786 1.23532 1.06639 1.04245 0.95074 1.22408 0.74092 0.81372 0.89759 1.90657 1.48570 1.65213 1.34031 1.86656 1.77167 1.23803 1.38256 1.21773 1.00282 0.90824 0.81552 1.18914 0.94576 0.91823 1.14419 1.20527 0.97660 0.91838 0.96688 1.20197 0.94477 0.95795 1.10980 1.19184 0.92931 0.83993 0.92219 1.83576 1.33159 1.19707 1.75082 1.20800 0.84020 0.96081 1.45788 0.87460 1.24492 0.96786 0.97476 0.95170 1.69646 1.17726 1.20907 1.42945 0.86170 0.81143 0.79842 0.79717 1.19760 1.20675 1.18271 1.21256 1.00716 0.92519 1.09947 1.20671 0.95060 0.95363 0.95348 0.91594 0.92236 0.92214 0.89167 0.90451 0.89980 0.89894 0.87448 0.90957 0.90925 0.86617 0.86148 0.90889 0.84635 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.65 37.16 0.36 -0.89 16 2 C -0.11 -0.90 5.14 -26.73 -0.14 -1.03 16 3 C -0.06 -0.65 2.72 -27.88 -0.08 -0.73 16 4 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 5 S -0.21 -2.13 21.74 -107.50 -2.34 -4.46 16 6 C -0.13 -0.73 10.60 101.05 1.07 0.34 16 7 C 0.48 6.50 6.10 36.01 0.22 6.72 16 8 O -0.50 -7.59 15.73 -18.75 -0.30 -7.88 16 9 O -0.34 -5.08 10.20 -39.26 -0.40 -5.48 16 10 C 0.13 1.87 5.59 36.00 0.20 2.07 16 11 C -0.20 -3.30 5.52 -104.57 -0.58 -3.87 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.20 -3.78 9.99 -39.40 -0.39 -4.18 16 14 C 0.17 3.83 6.65 -39.11 -0.26 3.57 16 15 O -0.21 -5.44 8.59 0.04 0.00 -5.44 16 16 C -0.39 -10.79 9.95 30.88 0.31 -10.48 16 17 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -24.78 13.96 55.48 0.77 -24.01 16 20 Si 0.91 21.21 28.62 -169.99 -4.86 16.34 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 25 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.58 7.42 -51.93 -0.39 0.20 16 29 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 30 H 0.08 0.46 6.88 -51.93 -0.36 0.11 16 31 H 0.08 0.36 7.01 -51.93 -0.36 0.00 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 40 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -30.32 355.52 -7.72 -38.04 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.44 Total: 1.84 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.51 Total: -14.31 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.77 Total: -24.01 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.70 Total: -18.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.34 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.34 Total: -4.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.32 -7.72 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767669725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.557 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds