Wall clock time and date at job start Tue Mar 31 2020 09:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.08996 * 109.47282 * 305.54485 * 3 2 1 5 5 S 1.81395 * 109.47031 * 185.54273 * 3 2 1 6 6 C 1.81403 * 102.99832 * 69.18651 * 5 3 2 7 7 C 1.50701 * 109.46780 * 65.54330 * 3 2 1 8 8 O 1.20825 * 120.00502 * 35.00046 * 7 3 2 9 9 O 1.34231 * 119.99825 * 214.99866 * 7 3 2 10 10 C 1.45197 * 117.00092 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93511 * 269.72648 * 11 10 9 13 13 C 1.38095 * 120.07033 * 179.72446 * 12 11 10 14 14 C 1.38880 * 119.93136 * 0.57081 * 13 12 11 15 15 O 1.35750 * 120.07282 * 179.68493 * 14 13 12 16 16 C 1.34834 * 117.00218 * 174.30292 * 15 14 13 17 17 H 1.07998 * 119.99994 * 5.06630 * 16 15 14 18 18 C 1.38650 * 119.99649 * 185.06730 * 16 15 14 19 19 N 1.31561 * 119.99456 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00470 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47318 * 89.99773 * 20 18 16 22 22 H 1.48503 * 109.47186 * 209.99958 * 20 18 16 23 23 H 1.48503 * 109.47045 * 329.99849 * 20 18 16 24 24 C 1.38880 * 119.85854 * 359.70664 * 14 13 12 25 25 C 1.38092 * 119.93406 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.46754 * 174.95713 * 1 2 3 27 27 H 1.08990 * 109.47210 * 54.95100 * 1 2 3 28 28 H 1.09000 * 109.46505 * 294.94914 * 1 2 3 29 29 H 1.08996 * 109.47326 * 120.00406 * 2 1 3 30 30 H 1.09004 * 109.46574 * 240.00098 * 2 1 3 31 31 H 1.08996 * 109.46900 * 304.93730 * 6 5 3 32 32 H 1.08998 * 109.47056 * 64.94158 * 6 5 3 33 33 H 1.09004 * 109.46836 * 184.93592 * 6 5 3 34 34 H 1.08998 * 109.47279 * 300.00011 * 10 9 7 35 35 H 1.09006 * 109.46942 * 59.99851 * 10 9 7 36 36 H 1.08000 * 119.96413 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03558 * 180.27856 * 13 12 11 38 38 H 0.97003 * 120.00085 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03372 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.97146 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 -0.8361 5 16 3.8465 1.4452 -0.1652 6 6 4.1014 0.8712 -1.8670 7 6 1.6529 2.1121 1.2934 8 8 1.6318 1.4760 2.3204 9 8 1.3314 3.4153 1.3044 10 6 0.9691 3.9940 2.5858 11 6 0.6430 5.4540 2.4035 12 6 1.6408 6.4041 2.5232 13 6 1.3463 7.7423 2.3511 14 6 0.0442 8.1345 2.0691 15 8 -0.2498 9.4497 1.9057 16 6 -1.5052 9.7528 1.5182 17 1 -2.2468 8.9725 1.4315 18 6 -1.8439 11.0663 1.2309 19 7 -3.0686 11.3619 0.8523 20 14 -0.5609 12.4158 1.3800 21 1 0.1434 12.5748 0.0824 22 1 -1.2260 13.6932 1.7422 23 1 0.4198 12.0521 2.4342 24 6 -0.9567 7.1784 1.9552 25 6 -0.6545 5.8413 2.1220 26 1 -0.3633 -1.0237 -0.0903 27 1 -0.3633 0.5901 -0.8412 28 1 -0.3632 0.4335 0.9318 29 1 1.8935 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.5962 -0.0843 -2.0077 32 1 3.6929 1.6042 -2.5627 33 1 5.1685 0.7490 -2.0532 34 1 0.0987 3.4743 2.9862 35 1 1.8039 3.8924 3.2794 36 1 2.6522 6.0989 2.7476 37 1 2.1268 8.4834 2.4402 38 1 -3.3058 12.2809 0.6517 39 1 -1.9703 7.4803 1.7365 40 1 -1.4323 5.0972 2.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767669725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:55 Heat of formation + Delta-G solvation = -110.258094 kcal Electronic energy + Delta-G solvation = -22359.643494 eV Core-core repulsion = 18844.913827 eV Total energy + Delta-G solvation = -3514.729667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73816 -40.91620 -38.77800 -37.56741 -35.69526 -34.51826 -32.35446 -31.89126 -29.81830 -29.44055 -27.87933 -26.34506 -24.00105 -23.77221 -22.14892 -21.56951 -19.88843 -19.19036 -19.18141 -18.20939 -17.78319 -16.97923 -16.57236 -16.32923 -15.85491 -15.72316 -15.40925 -15.26446 -14.90857 -14.73911 -14.48524 -14.34707 -14.22543 -14.08888 -13.88755 -13.64347 -13.49494 -13.13677 -12.88739 -12.68510 -12.53017 -12.49379 -12.35132 -11.98772 -11.96505 -11.75841 -11.61297 -11.31932 -11.00491 -10.92946 -9.89046 -9.17374 -8.84656 -8.52431 -6.25824 0.00926 0.35469 0.50186 1.32158 1.32522 1.36355 1.47903 1.52093 1.71822 2.26982 2.73226 2.97937 3.10356 3.36568 3.61533 3.80838 3.85976 3.93373 4.08236 4.20774 4.25022 4.32906 4.35164 4.37187 4.39522 4.50647 4.67462 4.69519 4.87387 4.87763 4.99749 5.09115 5.15552 5.20857 5.27123 5.35433 5.49541 5.62245 5.73957 5.83615 6.13832 6.57239 6.81356 7.52724 8.58783 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.002557 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.167234 B =10947.007110 C =11200.638454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.056 4.056 4 H 0.132 0.868 5 S -0.267 6.267 6 C -0.111 4.111 7 C 0.483 3.517 8 O -0.518 6.518 9 O -0.353 6.353 10 C 0.128 3.872 11 C -0.174 4.174 12 C -0.043 4.043 13 C -0.192 4.192 14 C 0.134 3.866 15 O -0.238 6.238 16 C -0.402 4.402 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.046 4.046 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.286 0.714 39 H 0.115 0.885 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 -22.866 -4.522 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.185 4.185 4 H 0.150 0.850 5 S -0.040 6.040 6 C -0.279 4.279 7 C 0.324 3.676 8 O -0.407 6.407 9 O -0.269 6.269 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.061 4.061 13 C -0.211 4.211 14 C 0.084 3.916 15 O -0.145 6.145 16 C -0.478 4.478 17 H 0.101 0.899 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.064 4.064 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.362 -22.361 -3.491 26.282 hybrid contribution -1.270 0.612 -0.667 1.559 sum 12.092 -21.749 -4.158 25.229 Atomic orbital electron populations 1.21882 0.94368 1.03619 1.01663 1.21806 0.96926 0.90634 1.04920 1.23107 0.97322 1.01206 0.96848 0.84957 1.87383 1.03780 1.89687 1.23134 1.23634 1.07779 1.05143 0.91337 1.23043 0.73125 0.80586 0.90817 1.90647 1.49488 1.65410 1.35176 1.86624 1.77501 1.24903 1.37903 1.21741 1.01494 0.89215 0.82033 1.19262 0.93891 0.93439 1.10901 1.20958 0.99479 0.90628 0.95002 1.20506 0.93411 0.97355 1.09855 1.19724 0.94687 0.83397 0.93766 1.83526 1.31903 1.21444 1.77657 1.20733 0.84720 0.96000 1.46374 0.89883 1.25289 0.98749 0.99589 0.95045 1.69727 1.19434 1.21687 1.45200 0.85224 0.78551 0.77321 0.79695 1.18993 1.19222 1.18556 1.21268 0.99722 0.93970 1.10845 1.20932 0.96583 0.94386 0.94527 0.90072 0.91351 0.94493 0.90663 0.87614 0.88089 0.89032 0.86181 0.89836 0.89553 0.82895 0.84644 0.90456 0.86763 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.65 71.99 0.69 -1.44 16 2 C -0.10 -1.44 5.14 30.60 0.16 -1.28 16 3 C -0.06 -1.00 2.72 29.85 0.08 -0.92 16 4 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 5 S -0.27 -4.78 21.74 -56.49 -1.23 -6.01 16 6 C -0.11 -0.91 10.60 113.37 1.20 0.30 16 7 C 0.48 12.02 6.10 71.24 0.43 12.46 16 8 O -0.52 -15.02 15.73 21.97 0.35 -14.68 16 9 O -0.35 -9.57 10.20 -51.43 -0.52 -10.09 16 10 C 0.13 3.35 5.59 71.24 0.40 3.75 16 11 C -0.17 -5.40 5.52 -19.83 -0.11 -5.50 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 13 C -0.19 -7.19 9.99 22.39 0.22 -6.96 16 14 C 0.13 6.15 6.65 22.58 0.15 6.30 16 15 O -0.24 -12.71 8.59 -22.78 -0.20 -12.90 16 16 C -0.40 -23.32 9.95 67.92 0.68 -22.65 16 17 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.70 5.49 84.83 0.47 1.16 16 19 N -0.92 -54.29 13.96 21.61 0.30 -53.98 16 20 Si 0.97 44.66 28.62 68.60 1.96 46.62 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 C -0.24 -10.30 9.17 22.39 0.21 -10.09 16 25 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.04 0.67 7.42 -2.39 -0.02 0.65 16 29 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.11 0.87 6.88 -2.39 -0.02 0.85 16 31 H 0.10 0.47 7.01 -2.39 -0.02 0.45 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.09 2.08 8.07 -2.38 -0.02 2.06 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.29 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -68.82 355.52 6.71 -62.10 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.04 Total: 16.32 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 5.01 Total: -27.37 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.30 Total: -53.98 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.37 Total: -37.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.96 Total: 46.62 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.23 Total: -6.01 kcal Total: -68.82 6.71 -62.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767669725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.157 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds