Wall clock time and date at job start Tue Mar 31 2020 09:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47393 * 264.99929 * 3 2 1 5 5 H 1.48504 * 109.46947 * 24.99873 * 3 2 1 6 6 H 1.48504 * 109.47223 * 144.99425 * 3 2 1 7 7 C 1.38814 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99597 * 210.72237 * 7 2 1 9 9 N 1.36930 * 120.00219 * 30.71949 * 7 2 1 10 10 C 1.46507 * 120.00133 * 175.14007 * 9 7 2 11 11 C 1.52992 * 109.47078 * 90.00100 * 10 9 7 12 12 O 1.42905 * 109.47423 * 65.00131 * 11 10 9 13 13 C 1.35900 * 116.99935 * 180.02562 * 12 11 10 14 14 C 1.38733 * 120.05067 * 180.02562 * 13 12 11 15 15 C 1.38143 * 119.94556 * 180.02562 * 14 13 12 16 16 C 1.38272 * 120.05315 * 0.02562 * 15 14 13 17 17 N 1.48001 * 119.94383 * 179.97438 * 16 15 14 18 18 O 1.21797 * 120.00447 * 359.97438 * 17 16 15 19 19 O 1.21803 * 119.99765 * 179.72326 * 17 16 15 20 20 C 1.38266 * 120.10954 * 0.25249 * 16 15 14 21 21 C 1.38142 * 120.05668 * 359.45139 * 20 16 15 22 22 C 1.46495 * 120.00018 * 355.14002 * 9 7 2 23 23 C 1.50702 * 109.47268 * 276.78310 * 22 9 7 24 24 O 1.20822 * 120.00115 * 359.97438 * 23 22 9 25 25 O 1.34228 * 119.99739 * 179.97438 * 23 22 9 26 26 H 0.97001 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46994 * 329.99663 * 10 9 7 28 28 H 1.08996 * 109.47081 * 210.00063 * 10 9 7 29 29 H 1.09003 * 109.47353 * 305.00092 * 11 10 9 30 30 H 1.08998 * 109.47689 * 185.00002 * 11 10 9 31 31 H 1.08005 * 120.03288 * 359.97438 * 14 13 12 32 32 H 1.07998 * 119.97844 * 179.97438 * 15 14 13 33 33 H 1.08003 * 119.97205 * 179.73256 * 20 16 15 34 34 H 1.08001 * 120.02881 * 180.25068 * 21 20 16 35 35 H 1.09004 * 109.47521 * 36.78300 * 22 9 7 36 36 H 1.09005 * 109.47103 * 156.78318 * 22 9 7 37 37 H 0.96709 * 116.99520 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3988 2.6809 0.5917 6 1 3.4909 1.4729 0.8032 7 6 2.0102 -1.2022 -0.0005 8 1 2.9766 -1.2680 0.4773 9 7 1.4696 -2.3046 -0.6068 10 6 2.2460 -3.5435 -0.7009 11 6 1.9788 -4.4077 0.5329 12 8 0.6102 -4.8189 0.5393 13 6 0.2049 -5.5983 1.5762 14 6 -1.1104 -6.0340 1.6451 15 6 -1.5201 -6.8257 2.7004 16 6 -0.6206 -7.1836 3.6877 17 7 -1.0624 -8.0314 4.8174 18 8 -2.2174 -8.4131 4.8773 19 8 -0.2696 -8.3514 5.6850 20 6 0.6894 -6.7458 3.6242 21 6 1.1055 -5.9590 2.5678 22 6 0.1150 -2.2452 -1.1613 23 6 -0.8883 -2.4885 -0.0635 24 8 -0.5106 -2.6911 1.0661 25 8 -2.2017 -2.4799 -0.3406 26 1 -0.4850 0.8400 0.0004 27 1 3.3080 -3.3036 -0.7535 28 1 1.9520 -4.0892 -1.5974 29 1 2.1889 -3.8305 1.4334 30 1 2.6221 -5.2872 0.5068 31 1 -1.8138 -5.7538 0.8748 32 1 -2.5440 -7.1649 2.7548 33 1 1.3890 -7.0231 4.3989 34 1 2.1299 -5.6206 2.5166 35 1 -0.0560 -1.2613 -1.5983 36 1 0.0037 -3.0090 -1.9310 37 1 -2.8069 -2.6406 0.3964 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:32 Heat of formation + Delta-G solvation = -70.578508 kcal Electronic energy + Delta-G solvation = -26184.991147 eV Core-core repulsion = 22125.688902 eV Total energy + Delta-G solvation = -4059.302245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.109 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.04744 -40.19854 -38.67580 -37.62144 -36.45170 -35.80440 -34.36554 -32.15311 -31.47211 -30.91516 -29.16137 -27.11408 -25.93622 -24.39950 -23.03420 -22.19537 -21.17773 -20.05733 -19.26519 -18.55237 -18.24544 -17.41772 -16.90509 -16.67408 -16.08300 -15.88405 -15.13688 -14.94196 -14.88846 -14.14370 -13.93895 -13.89748 -13.62809 -13.39319 -13.23696 -12.69908 -12.29652 -11.72873 -11.58878 -11.48515 -11.29379 -11.26557 -11.09229 -11.06716 -10.96580 -10.71501 -10.61348 -10.33305 -10.03971 -9.96695 -9.48424 -9.13771 -8.56557 -8.53046 -7.39544 -6.13803 -3.32613 0.02578 0.94257 1.51975 1.56148 3.21982 3.27200 3.35217 3.36820 3.37881 3.97040 4.21929 4.37146 4.46256 4.52409 4.72321 4.93913 5.01641 5.08428 5.17479 5.41844 5.52106 5.57985 5.66791 5.69968 5.77387 6.00647 6.05487 6.22275 6.27042 6.32098 6.52263 6.88945 7.07770 7.38642 7.55714 7.76747 7.87941 7.95949 8.83850 9.43453 9.58591 9.94436 10.97818 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.003732 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.421387 B = 7501.735778 C = 7769.239002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.010 3.990 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.083 0.917 9 N -0.568 5.568 10 C 0.150 3.850 11 C 0.029 3.971 12 O -0.271 6.271 13 C 0.221 3.779 14 C -0.157 4.157 15 C -0.015 4.015 16 C -0.105 4.105 17 N 0.043 4.957 18 O -0.178 6.178 19 O -0.180 6.180 20 C -0.010 4.010 21 C -0.216 4.216 22 C 0.185 3.815 23 C 0.485 3.515 24 O -0.511 6.511 25 O -0.546 6.546 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.117 0.883 36 H 0.051 0.949 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -10.974 -1.244 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.188 4.188 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.391 4.391 8 H 0.101 0.899 9 N -0.288 5.288 10 C 0.022 3.978 11 C -0.049 4.049 12 O -0.181 6.181 13 C 0.171 3.829 14 C -0.177 4.177 15 C -0.034 4.034 16 C -0.189 4.189 17 N 0.557 4.443 18 O -0.391 6.391 19 O -0.392 6.392 20 C -0.029 4.029 21 C -0.236 4.236 22 C 0.056 3.944 23 C 0.325 3.675 24 O -0.397 6.397 25 O -0.356 6.356 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.072 -10.299 -1.968 10.540 hybrid contribution -0.050 0.712 1.407 1.578 sum 1.022 -9.587 -0.560 9.658 Atomic orbital electron populations 1.69974 1.05478 1.26324 1.52008 1.24734 0.95105 0.98335 1.00630 0.86326 0.79419 0.83424 0.77910 1.21145 1.21948 1.20577 1.19217 1.01351 0.85987 1.32543 0.89886 1.44264 1.10214 1.08326 1.66007 1.21092 0.97017 0.86249 0.93474 1.24170 0.78236 0.97700 1.04765 1.86223 1.30892 1.60482 1.40471 1.19458 0.92759 0.84616 0.86102 1.20380 0.94560 1.02057 1.00666 1.20726 0.99708 0.92856 0.90083 1.20827 0.96915 1.08094 0.93097 1.43530 1.00285 0.99110 1.01332 1.94500 1.03566 1.57813 1.83197 1.94502 1.50677 1.60771 1.33285 1.20734 0.93058 0.91995 0.97124 1.21291 1.01668 1.04612 0.96026 1.20750 0.81072 1.02340 0.90246 1.25030 0.80239 0.69995 0.92226 1.90461 1.79762 1.45528 1.23926 1.84654 1.20394 1.85910 1.44682 0.92976 0.89854 0.92486 0.90997 0.93186 0.83351 0.82884 0.83256 0.83357 0.86575 0.93132 0.76844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 9.07 55.49 0.50 -23.16 16 2 C 0.01 0.26 4.98 -17.43 -0.09 0.18 16 3 Si 0.90 20.20 29.65 -169.99 -5.04 15.16 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.26 -6.40 9.45 -15.06 -0.14 -6.54 16 8 H 0.08 1.98 7.99 -52.48 -0.42 1.56 16 9 N -0.57 -12.18 2.05 -174.61 -0.36 -12.53 16 10 C 0.15 2.44 6.11 -4.04 -0.02 2.42 16 11 C 0.03 0.44 4.85 37.15 0.18 0.62 16 12 O -0.27 -4.51 6.69 -41.89 -0.28 -4.79 16 13 C 0.22 3.32 6.39 -39.22 -0.25 3.07 16 14 C -0.16 -2.14 9.99 -39.43 -0.39 -2.54 16 15 C -0.01 -0.19 9.55 -39.60 -0.38 -0.57 16 16 C -0.11 -1.48 6.85 -79.93 -0.55 -2.03 16 17 N 0.04 0.67 4.45 33.97 0.15 0.82 16 18 O -0.18 -2.82 18.44 -29.46 -0.54 -3.36 16 19 O -0.18 -2.86 18.44 -29.46 -0.54 -3.41 16 20 C -0.01 -0.13 9.55 -39.61 -0.38 -0.51 16 21 C -0.22 -2.89 9.04 -39.44 -0.36 -3.25 16 22 C 0.18 3.96 5.46 -5.20 -0.03 3.93 16 23 C 0.49 10.74 5.53 36.01 0.20 10.94 16 24 O -0.51 -12.46 14.28 -26.21 -0.37 -12.83 16 25 O -0.55 -10.60 13.42 -39.25 -0.53 -11.13 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 28 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.07 1.26 7.66 -51.93 -0.40 0.87 16 30 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 33 H 0.15 1.67 7.61 -52.48 -0.40 1.27 16 34 H 0.15 1.74 6.30 -52.49 -0.33 1.41 16 35 H 0.12 2.77 6.05 -51.93 -0.31 2.45 16 36 H 0.05 0.93 7.82 -51.93 -0.41 0.53 16 37 H 0.38 5.92 9.10 45.56 0.41 6.34 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -30.44 325.63 -7.34 -37.78 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.03 Total: 6.83 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.21 Total: 5.72 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.30 Total: -34.88 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -2.27 Total: -35.52 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.04 Total: 15.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.44 -7.34 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.796 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds