Wall clock time and date at job start Tue Mar 31 2020 10:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.07996 * 120.00370 * 239.99526 * 9 7 6 11 11 C 1.37882 * 119.99790 * 59.99908 * 9 7 6 12 12 N 1.31508 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47438 * 119.99721 * 13 11 9 16 16 H 1.48500 * 109.46931 * 240.00169 * 13 11 9 17 17 O 1.45198 * 109.46884 * 294.99550 * 7 6 4 18 18 C 1.34733 * 117.00021 * 150.00190 * 17 7 6 19 19 O 1.21491 * 119.99646 * 359.97438 * 18 17 7 20 20 C 1.47557 * 120.00019 * 180.02562 * 18 17 7 21 21 C 1.39718 * 120.17818 * 0.02562 * 20 18 17 22 22 C 1.37832 * 119.88088 * 180.02562 * 21 20 18 23 23 C 1.38476 * 120.21881 * 0.02562 * 22 21 20 24 24 C 1.38203 * 120.35515 * 359.97438 * 23 22 21 25 25 C 1.38320 * 120.11981 * 359.67725 * 24 23 22 26 26 F 1.35099 * 120.11147 * 180.30291 * 25 24 23 27 27 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 29 29 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 30 30 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 31 31 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 32 32 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 33 33 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 34 34 H 0.97002 * 120.00075 * 180.02562 * 12 11 9 35 35 H 1.07998 * 120.05824 * 0.02562 * 21 20 18 36 36 H 1.07997 * 119.89047 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.82364 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.94007 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7405 5.1964 0.8344 12 7 4.9672 4.8936 1.8541 13 14 6.4535 6.9162 0.6813 14 1 7.2840 7.0001 -0.5469 15 1 5.3484 7.9049 0.6006 16 1 7.2954 7.2105 1.8686 17 8 5.9016 2.2540 1.2415 18 6 7.0505 1.5517 1.1961 19 8 7.6569 1.4461 0.1487 20 6 7.5716 0.9099 2.4183 21 6 6.8764 1.0276 3.6245 22 6 7.3691 0.4260 4.7626 23 6 8.5509 -0.2941 4.7144 24 6 9.2462 -0.4166 3.5264 25 6 8.7612 0.1752 2.3741 26 9 9.4379 0.0502 1.2115 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4694 0.8911 33 1 3.5849 3.4699 -0.8888 34 1 4.7673 5.5632 2.5269 35 1 5.9547 1.5889 3.6651 36 1 6.8320 0.5173 5.6951 37 1 8.9313 -0.7625 5.6102 38 1 10.1670 -0.9801 3.4964 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870621590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:06 Heat of formation + Delta-G solvation = -196.763355 kcal Electronic energy + Delta-G solvation = -25938.955453 eV Core-core repulsion = 21854.261460 eV Total energy + Delta-G solvation = -4084.693992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.52821 -39.85133 -39.27842 -38.06407 -36.17512 -35.18354 -33.11073 -31.60678 -31.27543 -30.30651 -30.13140 -26.31590 -24.20567 -23.22604 -22.53004 -21.75340 -20.36680 -19.70414 -17.57335 -17.25746 -16.95679 -16.36318 -16.12944 -15.93577 -15.55199 -15.39844 -15.18091 -14.66942 -14.50276 -14.18347 -13.89687 -13.79713 -13.01409 -12.84751 -12.77631 -12.42381 -12.21658 -12.08462 -11.88109 -11.65536 -11.47744 -11.28260 -11.11416 -11.05478 -10.89645 -10.76948 -10.25771 -10.15210 -9.72158 -9.46514 -9.35576 -8.94551 -8.78498 -8.75639 -8.56117 -6.27679 -4.44115 0.96789 1.34969 2.99641 3.16336 3.26761 3.29910 3.30392 3.34249 3.81017 4.13880 4.25802 4.43101 4.83917 5.00198 5.05796 5.07866 5.14410 5.23258 5.37663 5.44064 5.46976 5.61978 5.88890 5.90398 5.98301 6.06686 6.15411 6.22510 6.32277 6.44344 6.47753 6.60318 6.88724 6.97217 7.01477 7.25535 7.65696 7.90298 7.95498 8.49592 8.63975 9.06007 9.32486 10.74896 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.006248 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.328953 B = 4480.158830 C = 6573.331997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.101 4.101 7 C 0.230 3.770 8 H 0.047 0.953 9 C -0.545 4.545 10 H 0.071 0.929 11 C 0.082 3.918 12 N -0.861 5.861 13 Si 0.898 3.102 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.281 1.281 17 O -0.324 6.324 18 C 0.504 3.496 19 O -0.514 6.514 20 C -0.143 4.143 21 C -0.031 4.031 22 C -0.150 4.150 23 C -0.072 4.072 24 C -0.175 4.175 25 C 0.153 3.847 26 F -0.118 7.118 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.267 0.733 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 -8.337 5.863 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.065 0.935 9 C -0.582 4.582 10 H 0.089 0.911 11 C -0.125 4.125 12 N -0.497 5.497 13 Si 0.724 3.276 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.206 1.206 17 O -0.239 6.239 18 C 0.347 3.653 19 O -0.406 6.406 20 C -0.145 4.145 21 C -0.049 4.049 22 C -0.168 4.168 23 C -0.090 4.090 24 C -0.194 4.194 25 C 0.133 3.867 26 F -0.096 7.096 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.660 -8.584 5.635 10.607 hybrid contribution 0.534 0.739 -0.229 0.940 sum -2.126 -7.845 5.406 9.762 Atomic orbital electron populations 1.21776 0.93274 1.02323 1.03331 1.22858 0.94857 0.81796 1.02050 1.86578 1.26095 1.30974 1.84733 1.24930 0.79496 0.94325 0.71180 1.90607 1.60234 1.43666 1.45839 1.21870 0.96533 0.88117 1.07340 1.20095 0.88078 0.92578 0.81454 0.93507 1.21428 1.32218 0.94187 1.10317 0.91091 1.25102 0.93792 0.99174 0.94441 1.69861 1.34435 1.34454 1.10913 0.86439 0.79199 0.83324 0.78595 1.19380 1.20480 1.20642 1.86628 1.35928 1.59394 1.41907 1.20431 0.81235 0.76625 0.86965 1.90758 1.58710 1.59327 1.31777 1.19716 0.96451 1.03200 0.95163 1.21550 0.98885 0.94322 0.90166 1.21189 0.97124 0.99640 0.98813 1.21137 0.94243 0.96607 0.97008 1.21033 1.02519 1.04139 0.91710 1.17797 0.90137 0.96532 0.82266 1.91577 1.78298 1.93531 1.46164 0.90852 0.91590 0.91701 0.91874 0.91758 0.84120 0.87748 0.92311 0.83164 0.84934 0.84958 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.70 10.22 -39.27 -0.40 -7.10 16 4 C 0.46 9.75 7.84 36.00 0.28 10.03 16 5 O -0.52 -12.25 15.17 -23.95 -0.36 -12.62 16 6 C -0.10 -2.27 5.23 -27.88 -0.15 -2.42 16 7 C 0.23 5.95 1.65 -27.88 -0.05 5.90 16 8 H 0.05 1.28 6.97 -51.93 -0.36 0.92 16 9 C -0.54 -14.67 8.92 -34.44 -0.31 -14.98 16 10 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 11 C 0.08 2.11 5.25 -17.82 -0.09 2.02 16 12 N -0.86 -22.12 10.93 55.43 0.61 -21.52 16 13 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 O -0.32 -8.35 7.78 -45.81 -0.36 -8.71 16 18 C 0.50 12.70 7.86 34.53 0.27 12.97 16 19 O -0.51 -14.22 14.60 -19.26 -0.28 -14.50 16 20 C -0.14 -2.95 5.88 -104.93 -0.62 -3.56 16 21 C -0.03 -0.53 9.61 -39.18 -0.38 -0.91 16 22 C -0.15 -1.95 10.03 -39.64 -0.40 -2.35 16 23 C -0.07 -0.84 10.03 -39.51 -0.40 -1.24 16 24 C -0.18 -2.41 10.01 -39.56 -0.40 -2.81 16 25 C 0.15 2.82 7.29 -38.94 -0.28 2.54 16 26 F -0.12 -2.41 15.55 2.25 0.04 -2.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.14 3.33 6.22 -51.93 -0.32 3.00 16 33 H 0.10 2.14 8.14 -51.93 -0.42 1.71 16 34 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.15 2.67 7.61 -52.49 -0.40 2.27 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -31.94 341.12 -6.97 -38.91 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.43 Total: 2.53 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.89 Total: 5.05 kcal Atomic # 7 Polarization: -22.12 SS G_CDS: 0.61 Total: -21.52 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.40 Total: -42.92 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.94 -6.97 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870621590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.854 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds