Wall clock time and date at job start Tue Mar 31 2020 10:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.07996 * 120.00370 * 239.99526 * 9 7 6 11 11 C 1.37882 * 119.99790 * 59.99908 * 9 7 6 12 12 N 1.31508 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47438 * 119.99721 * 13 11 9 16 16 H 1.48500 * 109.46931 * 240.00169 * 13 11 9 17 17 O 1.45198 * 109.46884 * 294.99550 * 7 6 4 18 18 C 1.34733 * 117.00021 * 150.00190 * 17 7 6 19 19 O 1.21491 * 119.99646 * 359.97438 * 18 17 7 20 20 C 1.47557 * 120.00019 * 180.02562 * 18 17 7 21 21 C 1.39718 * 120.17818 * 0.02562 * 20 18 17 22 22 C 1.37832 * 119.88088 * 180.02562 * 21 20 18 23 23 C 1.38476 * 120.21881 * 0.02562 * 22 21 20 24 24 C 1.38203 * 120.35515 * 359.97438 * 23 22 21 25 25 C 1.38320 * 120.11981 * 359.67725 * 24 23 22 26 26 F 1.35099 * 120.11147 * 180.30291 * 25 24 23 27 27 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 29 29 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 30 30 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 31 31 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 32 32 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 33 33 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 34 34 H 0.97002 * 120.00075 * 180.02562 * 12 11 9 35 35 H 1.07998 * 120.05824 * 0.02562 * 21 20 18 36 36 H 1.07997 * 119.89047 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.82364 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.94007 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7405 5.1964 0.8344 12 7 4.9672 4.8936 1.8541 13 14 6.4535 6.9162 0.6813 14 1 7.2840 7.0001 -0.5469 15 1 5.3484 7.9049 0.6006 16 1 7.2954 7.2105 1.8686 17 8 5.9016 2.2540 1.2415 18 6 7.0505 1.5517 1.1961 19 8 7.6569 1.4461 0.1487 20 6 7.5716 0.9099 2.4183 21 6 6.8764 1.0276 3.6245 22 6 7.3691 0.4260 4.7626 23 6 8.5509 -0.2941 4.7144 24 6 9.2462 -0.4166 3.5264 25 6 8.7612 0.1752 2.3741 26 9 9.4379 0.0502 1.2115 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4694 0.8911 33 1 3.5849 3.4699 -0.8888 34 1 4.7673 5.5632 2.5269 35 1 5.9547 1.5889 3.6651 36 1 6.8320 0.5173 5.6951 37 1 8.9313 -0.7625 5.6102 38 1 10.1670 -0.9801 3.4964 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870621590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:06 Heat of formation + Delta-G solvation = -214.451065 kcal Electronic energy + Delta-G solvation = -25939.722449 eV Core-core repulsion = 21854.261460 eV Total energy + Delta-G solvation = -4085.460989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.98574 -41.57478 -40.96466 -39.49823 -37.86144 -37.10363 -35.10655 -33.00393 -32.58153 -31.81934 -31.50270 -28.24659 -25.78360 -24.61627 -23.78517 -23.25678 -21.97182 -21.52163 -19.19340 -19.00820 -18.56219 -18.06633 -17.64012 -17.48631 -17.25763 -16.97141 -16.78081 -16.46176 -16.07629 -15.74668 -15.28508 -15.12661 -14.61379 -14.30219 -14.17898 -13.86981 -13.73953 -13.46698 -13.31184 -13.00676 -12.95996 -12.88225 -12.81434 -12.64156 -12.47777 -12.31328 -12.13814 -11.60570 -11.50868 -11.44561 -11.26233 -10.83040 -10.73380 -10.18319 -9.81963 -8.27050 -6.52743 -0.37494 0.15817 1.25093 1.37392 1.41574 1.52997 1.73906 1.77485 2.08277 2.35626 2.67603 3.04484 3.14449 3.65833 3.85353 3.95126 3.99353 4.00565 4.12151 4.26538 4.29763 4.33612 4.43746 4.53156 4.71016 4.86197 4.92510 4.95000 5.01392 5.11407 5.12374 5.24079 5.27641 5.34115 5.47215 5.60218 5.81330 5.89716 5.98120 6.53475 6.82460 7.08779 7.27303 8.75796 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.006248 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.328953 B = 4480.158830 C = 6573.331997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.545 6.545 6 C -0.092 4.092 7 C 0.229 3.771 8 H 0.014 0.986 9 C -0.577 4.577 10 H 0.051 0.949 11 C 0.051 3.949 12 N -0.870 5.870 13 Si 0.958 3.042 14 H -0.278 1.278 15 H -0.259 1.259 16 H -0.278 1.278 17 O -0.329 6.329 18 C 0.490 3.510 19 O -0.558 6.558 20 C -0.187 4.187 21 C -0.044 4.044 22 C -0.132 4.132 23 C -0.042 4.042 24 C -0.160 4.160 25 C 0.122 3.878 26 F -0.141 7.141 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.275 0.725 35 H 0.133 0.867 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -9.083 9.214 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.436 6.436 6 C -0.129 4.129 7 C 0.176 3.824 8 H 0.032 0.968 9 C -0.614 4.614 10 H 0.069 0.931 11 C -0.155 4.155 12 N -0.505 5.505 13 Si 0.783 3.217 14 H -0.203 1.203 15 H -0.184 1.184 16 H -0.203 1.203 17 O -0.244 6.244 18 C 0.336 3.664 19 O -0.453 6.453 20 C -0.189 4.189 21 C -0.063 4.063 22 C -0.149 4.149 23 C -0.060 4.060 24 C -0.178 4.178 25 C 0.102 3.898 26 F -0.120 7.120 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.193 0.807 37 H 0.209 0.791 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.159 -9.331 9.006 13.347 hybrid contribution 0.647 0.840 -1.152 1.565 sum -2.512 -8.492 7.854 11.836 Atomic orbital electron populations 1.21805 0.89644 1.04485 1.03814 1.23306 0.97612 0.79633 1.02049 1.86545 1.23820 1.33576 1.83925 1.24533 0.80486 0.93363 0.70597 1.90598 1.61258 1.44371 1.47328 1.21640 0.94444 0.89202 1.07644 1.20019 0.90061 0.91603 0.80712 0.96811 1.21445 1.33588 0.95414 1.10935 0.93098 1.25678 0.93877 1.02187 0.93804 1.69918 1.34086 1.35635 1.10872 0.85519 0.78861 0.79358 0.78003 1.20323 1.18365 1.20314 1.86615 1.36537 1.59696 1.41572 1.21451 0.80473 0.75983 0.88448 1.90700 1.59677 1.61104 1.33828 1.19677 0.98795 1.06136 0.94329 1.21545 0.98525 0.95529 0.90669 1.21667 0.97416 0.97419 0.98412 1.21832 0.92363 0.93878 0.97884 1.21519 1.03465 1.02499 0.90316 1.18312 0.90114 0.98148 0.83225 1.91508 1.78654 1.93878 1.47919 0.87794 0.91195 0.91115 0.91854 0.91965 0.84897 0.86177 0.91542 0.84872 0.80733 0.79083 0.80888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -13.33 10.22 -51.47 -0.53 -13.86 16 4 C 0.46 20.69 7.84 71.24 0.56 21.25 16 5 O -0.55 -27.37 15.17 26.93 0.41 -26.96 16 6 C -0.09 -4.34 5.23 29.85 0.16 -4.18 16 7 C 0.23 12.69 1.65 29.85 0.05 12.73 16 8 H 0.01 0.83 6.97 -2.39 -0.02 0.81 16 9 C -0.58 -32.98 8.92 25.60 0.23 -32.75 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 11 C 0.05 2.68 5.25 84.66 0.44 3.13 16 12 N -0.87 -45.39 10.93 21.45 0.23 -45.15 16 13 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 O -0.33 -18.22 7.78 -51.43 -0.40 -18.62 16 18 C 0.49 26.69 7.86 70.28 0.55 27.24 16 19 O -0.56 -33.78 14.60 19.87 0.29 -33.49 16 20 C -0.19 -8.06 5.88 -20.06 -0.12 -8.18 16 21 C -0.04 -1.52 9.61 22.53 0.22 -1.30 16 22 C -0.13 -2.90 10.03 22.23 0.22 -2.68 16 23 C -0.04 -0.75 10.03 22.32 0.22 -0.53 16 24 C -0.16 -3.86 10.01 22.28 0.22 -3.64 16 25 C 0.12 4.56 7.29 22.69 0.17 4.73 16 26 F -0.14 -6.11 15.55 44.97 0.70 -5.41 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.13 6.52 6.22 -2.39 -0.01 6.50 16 33 H 0.12 5.15 8.14 -2.39 -0.02 5.13 16 34 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.13 4.91 7.61 -2.91 -0.02 4.89 16 36 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -77.56 341.12 7.93 -69.63 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.09 Total: 14.17 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 4.11 Total: 15.67 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.23 Total: -45.15 kcal Atomic # 8 Polarization: -92.70 SS G_CDS: -0.23 Total: -92.92 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.70 Total: -5.41 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.56 7.93 -69.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870621590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.822 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds