Wall clock time and date at job start Tue Mar 31 2020 09:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48500 * 109.46947 * 240.00009 * 3 2 1 5 5 H 1.48507 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 119.99709 * 3 2 1 7 7 C 1.37875 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52566 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.28012 * 177.55932 * 10 9 7 12 12 N 1.46846 * 109.52260 * 300.82015 * 11 10 9 13 13 C 1.38508 * 110.99897 * 185.84286 * 12 11 10 14 14 C 1.39898 * 120.50176 * 179.97438 * 13 12 11 15 15 C 1.39030 * 118.21844 * 179.97438 * 14 13 12 16 16 C 1.48442 * 120.50197 * 179.97438 * 15 14 13 17 17 N 1.34778 * 120.00121 * 180.02562 * 16 15 14 18 18 O 1.21477 * 119.99753 * 359.97438 * 16 15 14 19 19 N 1.33347 * 118.99983 * 0.02562 * 15 14 13 20 20 C 1.31658 * 120.91977 * 359.97438 * 19 15 14 21 21 Cl 1.73601 * 119.01398 * 180.02562 * 20 19 15 22 22 N 1.32000 * 121.97378 * 359.74708 * 20 19 15 23 23 C 1.46846 * 111.19997 * 61.74591 * 12 11 10 24 24 C 1.53040 * 109.51964 * 298.25655 * 23 12 11 25 25 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.57949 * 59.84106 * 9 7 2 27 27 H 1.08999 * 109.49853 * 57.61556 * 10 9 7 28 28 H 1.08996 * 109.49839 * 297.50587 * 10 9 7 29 29 H 1.09001 * 109.46314 * 180.80749 * 11 10 9 30 30 H 1.08997 * 109.46418 * 60.83870 * 11 10 9 31 31 H 1.07995 * 120.89319 * 359.95846 * 14 13 12 32 32 H 0.97001 * 119.99745 * 359.97438 * 17 16 15 33 33 H 0.96998 * 119.99997 * 180.02562 * 17 16 15 34 34 H 1.08996 * 109.46231 * 58.27402 * 23 12 11 35 35 H 1.09004 * 109.46418 * 178.24241 * 23 12 11 36 36 H 1.09004 * 109.50602 * 299.23671 * 24 23 12 37 37 H 1.08998 * 109.50366 * 179.12192 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2450 -3.6640 0.0018 11 6 1.4750 -4.9851 0.0633 12 7 0.6533 -5.0180 1.2799 13 6 0.0439 -6.2522 1.4340 14 6 -0.7870 -6.5018 2.5315 15 6 -1.3748 -7.7571 2.6389 16 6 -2.2649 -8.0769 3.7831 17 7 -2.8290 -9.2972 3.8775 18 8 -2.4840 -7.2388 4.6348 19 7 -1.1262 -8.6700 1.6992 20 6 -0.3378 -8.3955 0.6812 21 17 -0.0487 -9.6207 -0.5142 22 7 0.2352 -7.2148 0.5394 23 6 -0.3404 -3.9369 1.2789 24 6 0.3753 -2.5844 1.2537 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5577 -0.8876 27 1 2.8991 -3.5831 0.8700 28 1 2.8428 -3.6331 -0.9090 29 1 2.1803 -5.8160 0.0789 30 1 0.8315 -5.0715 -0.8121 31 1 -0.9668 -5.7399 3.2754 32 1 -2.6537 -9.9665 3.1976 33 1 -3.4109 -9.5060 4.6250 34 1 -0.9756 -4.0282 0.3978 35 1 -0.9538 -4.0065 2.1773 36 1 1.0000 -2.4866 2.1416 37 1 -0.3626 -1.7824 1.2372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872506311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:39 Heat of formation + Delta-G solvation = 10.345101 kcal Electronic energy + Delta-G solvation = -23021.907369 eV Core-core repulsion = 19439.116151 eV Total energy + Delta-G solvation = -3582.791218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56616 -39.56463 -38.50337 -37.01535 -34.92309 -33.97216 -33.10936 -32.10730 -30.41798 -30.11010 -26.46800 -25.43976 -24.09641 -22.47200 -22.07944 -21.02977 -18.99389 -18.67622 -18.09440 -17.13852 -16.44355 -16.11559 -15.87552 -15.67601 -15.31710 -14.77655 -14.59026 -14.35851 -14.11235 -13.68722 -13.06690 -12.68547 -12.50160 -12.04517 -11.73424 -11.67828 -11.38414 -11.20856 -11.06033 -10.86057 -10.81624 -10.61556 -10.42013 -10.19113 -10.05814 -9.92743 -9.67003 -9.56971 -9.12951 -8.88501 -8.39870 -8.36270 -6.06232 -4.11694 0.24793 0.66043 1.17925 2.43671 2.89890 3.29219 3.32804 3.34392 3.36932 3.54255 3.98494 4.33321 4.39332 4.56789 4.94005 5.10914 5.24127 5.41220 5.56709 5.73716 5.79235 5.89485 6.10683 6.15223 6.27882 6.37609 6.51268 6.65521 6.78347 6.84607 6.97245 7.13303 7.18207 7.30413 7.61618 7.67168 7.84683 7.87730 7.99313 8.36072 8.91355 9.53684 11.00388 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.003446 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.444464 B = 8123.365153 C = 9291.407518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.066 3.934 12 N -0.458 5.458 13 C 0.388 3.612 14 C -0.180 4.180 15 C 0.148 3.852 16 C 0.584 3.416 17 N -0.831 5.831 18 O -0.521 6.521 19 N -0.520 5.520 20 C 0.391 3.609 21 Cl 0.024 6.976 22 N -0.534 5.534 23 C 0.058 3.942 24 C -0.107 4.107 25 H 0.261 0.739 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.169 0.831 32 H 0.413 0.587 33 H 0.408 0.592 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -18.860 3.392 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.027 3.973 10 C -0.149 4.149 11 C -0.060 4.060 12 N -0.174 5.174 13 C 0.145 3.855 14 C -0.208 4.208 15 C 0.005 3.995 16 C 0.365 3.635 17 N -0.395 5.395 18 O -0.395 6.395 19 N -0.244 5.244 20 C 0.095 3.905 21 Cl 0.051 6.949 22 N -0.258 5.258 23 C -0.066 4.066 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.186 0.814 32 H 0.244 0.756 33 H 0.239 0.761 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.073 -18.671 3.491 19.427 hybrid contribution -0.099 0.738 -0.143 0.758 sum -4.172 -17.933 3.348 18.714 Atomic orbital electron populations 1.69827 1.05890 1.26692 1.50720 1.24964 0.94867 0.99114 0.94968 0.86658 0.79617 0.83101 0.78635 1.20321 1.21326 1.20252 1.21115 0.92939 0.90392 1.50615 0.92591 1.18738 0.92719 0.92035 0.93825 1.21800 0.98892 0.93037 1.01203 1.22222 0.95884 1.00227 0.87665 1.58915 1.20867 0.99256 1.38352 1.20353 0.85984 0.91331 0.87835 1.22507 0.99033 0.98977 1.00253 1.21103 0.95424 0.89903 0.93117 1.17641 0.79294 0.82725 0.83807 1.43590 1.50866 1.14636 1.30430 1.90877 1.60944 1.47646 1.40043 1.67671 1.18311 1.35257 1.03158 1.22543 0.90603 0.88030 0.89371 1.98435 1.94299 1.49921 1.52204 1.67860 1.27240 1.01418 1.29328 1.22689 0.91887 0.91150 1.00845 1.21817 1.00723 0.91807 1.00224 0.92863 0.95629 0.92198 0.92046 0.90614 0.93072 0.81385 0.75605 0.76071 0.93471 0.90900 0.93054 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.37 55.43 0.63 -23.65 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.05 2.16 -91.65 -0.20 0.85 16 10 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 11 C 0.07 1.14 4.66 -3.84 -0.02 1.12 16 12 N -0.46 -7.83 4.68 -173.03 -0.81 -8.64 16 13 C 0.39 6.10 6.41 -154.87 -0.99 5.11 16 14 C -0.18 -2.58 8.81 -38.67 -0.34 -2.92 16 15 C 0.15 1.93 6.79 -82.71 -0.56 1.37 16 16 C 0.58 6.95 8.10 -12.06 -0.10 6.85 16 17 N -0.83 -6.34 8.87 30.67 0.27 -6.07 16 18 O -0.52 -7.78 17.25 5.39 0.09 -7.68 16 19 N -0.52 -6.59 9.66 -8.30 -0.08 -6.67 16 20 C 0.39 5.36 8.17 -92.09 -0.75 4.61 16 21 Cl 0.02 0.27 29.26 -51.86 -1.52 -1.25 16 22 N -0.53 -8.22 8.79 -10.88 -0.10 -8.32 16 23 C 0.06 1.04 5.25 -3.83 -0.02 1.02 16 24 C -0.11 -2.32 5.12 -26.65 -0.14 -2.46 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.24 7.73 -51.93 -0.40 0.84 16 30 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.17 2.33 6.90 -52.49 -0.36 1.97 16 32 H 0.41 2.59 8.21 -40.82 -0.34 2.26 16 33 H 0.41 2.24 8.93 -40.82 -0.36 1.87 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.10 2.53 6.17 -51.93 -0.32 2.21 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -28.47 324.99 -9.49 -37.96 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.21 Total: 2.69 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.65 Total: 1.12 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.08 Total: -53.35 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.47 -9.49 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872506311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.309 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds