Wall clock time and date at job start Tue Mar 31 2020 09:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48500 * 109.46947 * 240.00009 * 3 2 1 5 5 H 1.48507 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 119.99709 * 3 2 1 7 7 C 1.37875 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52566 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.28012 * 177.55932 * 10 9 7 12 12 N 1.46846 * 109.52260 * 300.82015 * 11 10 9 13 13 C 1.38508 * 110.99897 * 185.84286 * 12 11 10 14 14 C 1.39898 * 120.50176 * 179.97438 * 13 12 11 15 15 C 1.39030 * 118.21844 * 179.97438 * 14 13 12 16 16 C 1.48442 * 120.50197 * 179.97438 * 15 14 13 17 17 N 1.34778 * 120.00121 * 180.02562 * 16 15 14 18 18 O 1.21477 * 119.99753 * 359.97438 * 16 15 14 19 19 N 1.33347 * 118.99983 * 0.02562 * 15 14 13 20 20 C 1.31658 * 120.91977 * 359.97438 * 19 15 14 21 21 Cl 1.73601 * 119.01398 * 180.02562 * 20 19 15 22 22 N 1.32000 * 121.97378 * 359.74708 * 20 19 15 23 23 C 1.46846 * 111.19997 * 61.74591 * 12 11 10 24 24 C 1.53040 * 109.51964 * 298.25655 * 23 12 11 25 25 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.57949 * 59.84106 * 9 7 2 27 27 H 1.08999 * 109.49853 * 57.61556 * 10 9 7 28 28 H 1.08996 * 109.49839 * 297.50587 * 10 9 7 29 29 H 1.09001 * 109.46314 * 180.80749 * 11 10 9 30 30 H 1.08997 * 109.46418 * 60.83870 * 11 10 9 31 31 H 1.07995 * 120.89319 * 359.95846 * 14 13 12 32 32 H 0.97001 * 119.99745 * 359.97438 * 17 16 15 33 33 H 0.96998 * 119.99997 * 180.02562 * 17 16 15 34 34 H 1.08996 * 109.46231 * 58.27402 * 23 12 11 35 35 H 1.09004 * 109.46418 * 178.24241 * 23 12 11 36 36 H 1.09004 * 109.50602 * 299.23671 * 24 23 12 37 37 H 1.08998 * 109.50366 * 179.12192 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2450 -3.6640 0.0018 11 6 1.4750 -4.9851 0.0633 12 7 0.6533 -5.0180 1.2799 13 6 0.0439 -6.2522 1.4340 14 6 -0.7870 -6.5018 2.5315 15 6 -1.3748 -7.7571 2.6389 16 6 -2.2649 -8.0769 3.7831 17 7 -2.8290 -9.2972 3.8775 18 8 -2.4840 -7.2388 4.6348 19 7 -1.1262 -8.6700 1.6992 20 6 -0.3378 -8.3955 0.6812 21 17 -0.0487 -9.6207 -0.5142 22 7 0.2352 -7.2148 0.5394 23 6 -0.3404 -3.9369 1.2789 24 6 0.3753 -2.5844 1.2537 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5577 -0.8876 27 1 2.8991 -3.5831 0.8700 28 1 2.8428 -3.6331 -0.9090 29 1 2.1803 -5.8160 0.0789 30 1 0.8315 -5.0715 -0.8121 31 1 -0.9668 -5.7399 3.2754 32 1 -2.6537 -9.9665 3.1976 33 1 -3.4109 -9.5060 4.6250 34 1 -0.9756 -4.0282 0.3978 35 1 -0.9538 -4.0065 2.1773 36 1 1.0000 -2.4866 2.1416 37 1 -0.3626 -1.7824 1.2372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872506311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:39 Heat of formation + Delta-G solvation = -8.967221 kcal Electronic energy + Delta-G solvation = -23022.744814 eV Core-core repulsion = 19439.116151 eV Total energy + Delta-G solvation = -3583.628663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.70144 -40.63678 -39.80580 -38.02552 -36.40959 -35.06217 -34.26624 -33.66818 -31.82781 -31.66581 -28.06843 -26.70643 -25.43045 -23.98110 -23.55736 -22.15474 -20.61308 -19.66589 -19.25049 -18.47089 -18.01554 -17.16042 -17.00359 -16.79814 -16.63545 -16.37806 -15.89030 -15.55071 -15.19515 -15.11256 -14.77831 -14.43349 -14.12349 -13.28825 -13.17752 -12.92323 -12.78703 -12.63378 -12.45577 -12.37695 -12.24277 -12.12265 -11.97530 -11.84162 -11.43634 -11.07103 -10.89156 -10.83192 -10.76648 -10.68420 -10.39205 -9.66871 -8.07937 -6.20023 -0.83056 -0.48146 0.15059 1.42941 1.44817 1.45289 1.52589 1.94936 2.14318 2.43675 2.45856 2.95668 3.19865 3.22383 3.50628 3.77620 4.02230 4.10052 4.14656 4.25744 4.40094 4.54620 4.61037 4.66363 4.86516 4.96607 5.07421 5.16155 5.33516 5.47209 5.58934 5.66345 5.75922 5.81922 6.01543 6.11875 6.18235 6.39223 6.51984 6.89935 7.07265 7.48043 8.96820 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.003446 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.444464 B = 8123.365153 C = 9291.407518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.102 4.102 11 C 0.078 3.922 12 N -0.465 5.465 13 C 0.378 3.622 14 C -0.185 4.185 15 C 0.153 3.847 16 C 0.585 3.415 17 N -0.804 5.804 18 O -0.554 6.554 19 N -0.503 5.503 20 C 0.381 3.619 21 Cl 0.047 6.953 22 N -0.545 5.545 23 C 0.071 3.929 24 C -0.097 4.097 25 H 0.261 0.739 26 H -0.004 1.004 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.171 0.829 32 H 0.423 0.577 33 H 0.422 0.578 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -20.740 3.843 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.140 4.140 11 C -0.048 4.048 12 N -0.181 5.181 13 C 0.136 3.864 14 C -0.211 4.211 15 C 0.009 3.991 16 C 0.366 3.634 17 N -0.368 5.368 18 O -0.431 6.431 19 N -0.226 5.226 20 C 0.086 3.914 21 Cl 0.075 6.925 22 N -0.270 5.270 23 C -0.053 4.053 24 C -0.136 4.136 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.188 0.812 32 H 0.256 0.744 33 H 0.256 0.744 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.176 -20.622 3.930 21.405 hybrid contribution -0.113 1.167 -0.323 1.217 sum -4.289 -19.455 3.607 20.246 Atomic orbital electron populations 1.69960 1.06981 1.27197 1.51357 1.25667 0.95642 1.02107 0.94839 0.85740 0.78470 0.79490 0.78708 1.19913 1.21137 1.19774 1.21498 0.93083 0.91962 1.50479 0.92917 1.18708 0.93173 0.92578 0.93235 1.21636 0.98161 0.92916 1.01259 1.22039 0.95858 0.99124 0.87812 1.58842 1.21026 0.99790 1.38414 1.20244 0.86870 0.90792 0.88528 1.22543 0.98968 0.99734 0.99893 1.21353 0.94957 0.89473 0.93341 1.17504 0.79339 0.83527 0.83059 1.43427 1.49438 1.13203 1.30779 1.90875 1.62287 1.48914 1.41061 1.67776 1.17485 1.34685 1.02649 1.22860 0.90427 0.88126 0.90027 1.98446 1.94138 1.48678 1.51268 1.67816 1.27641 1.01984 1.29543 1.22422 0.91675 0.89649 1.01597 1.21523 0.99746 0.93351 0.98933 0.93010 0.98561 0.92456 0.91658 0.89178 0.93689 0.81170 0.74431 0.74410 0.94143 0.88795 0.93880 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.01 11.37 21.45 0.24 -50.76 16 2 C 0.02 0.87 5.31 84.65 0.45 1.32 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -28.34 8.56 25.60 0.22 -28.12 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.04 1.98 2.16 -11.46 -0.02 1.96 16 10 C -0.10 -4.01 5.32 30.65 0.16 -3.85 16 11 C 0.08 2.66 4.66 86.32 0.40 3.06 16 12 N -0.46 -15.59 4.68 -701.36 -3.28 -18.87 16 13 C 0.38 11.44 6.41 133.30 0.85 12.29 16 14 C -0.18 -5.02 8.81 22.86 0.20 -4.82 16 15 C 0.15 3.70 6.79 41.83 0.28 3.98 16 16 C 0.58 12.69 8.10 86.96 0.70 13.39 16 17 N -0.80 -9.97 8.87 -175.19 -1.55 -11.53 16 18 O -0.55 -15.75 17.25 -3.64 -0.06 -15.81 16 19 N -0.50 -11.53 9.66 -180.18 -1.74 -13.27 16 20 C 0.38 9.67 8.17 180.86 1.48 11.15 16 21 Cl 0.05 0.95 29.26 -2.72 -0.08 0.88 16 22 N -0.55 -15.95 8.79 -188.34 -1.66 -17.61 16 23 C 0.07 2.54 5.25 86.33 0.45 3.00 16 24 C -0.10 -4.31 5.12 30.65 0.16 -4.15 16 25 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.84 7.73 -2.39 -0.02 2.82 16 30 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.17 4.54 6.90 -2.91 -0.02 4.52 16 32 H 0.42 3.91 8.21 -92.71 -0.76 3.15 16 33 H 0.42 3.38 8.93 -92.71 -0.83 2.55 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 2.94 6.75 -2.38 -0.02 2.93 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 3.82 6.17 -2.39 -0.01 3.81 16 Total: -1.00 -61.27 324.99 -1.21 -62.48 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -0.45 Total: 10.58 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.34 Total: 9.21 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -7.99 Total: -112.04 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.06 Total: -15.81 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.08 Total: 0.88 kcal Total: -61.27 -1.21 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872506311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.509 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds