Wall clock time and date at job start Tue Mar 31 2020 09:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47101 * 2 1 4 4 C 1.38287 * 119.97319 * 270.02248 * 3 2 1 5 5 C 1.38247 * 120.11084 * 180.02562 * 4 3 2 6 6 C 1.38168 * 120.05649 * 359.67852 * 5 4 3 7 7 C 1.38708 * 119.94125 * 0.57375 * 6 5 4 8 8 O 1.35904 * 120.05570 * 179.72127 * 7 6 5 9 9 C 1.42903 * 116.99628 * 359.72917 * 8 7 6 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 O 1.45194 * 109.47550 * 64.99819 * 10 9 8 12 12 C 1.34227 * 117.00087 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99644 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.46769 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99937 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00243 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00138 * 180.02562 * 16 15 14 19 19 N 1.31637 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46862 * 60.00043 * 20 18 16 22 22 H 1.48502 * 109.47139 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47083 * 300.00030 * 20 18 16 24 24 C 1.38123 * 119.97441 * 90.00342 * 3 2 1 25 25 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46460 * 299.99993 * 1 2 3 27 27 H 1.08994 * 109.47069 * 59.99586 * 1 2 3 28 28 H 1.09001 * 109.46820 * 239.99604 * 2 1 3 29 29 H 1.08999 * 109.46607 * 120.00323 * 2 1 3 30 30 H 1.08000 * 119.94054 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.96942 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.02385 * 180.29699 * 6 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 34 34 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 35 35 H 1.09002 * 109.46642 * 184.99995 * 10 9 8 36 36 H 1.09002 * 109.47069 * 304.99524 * 10 9 8 37 37 H 1.08999 * 109.47657 * 300.00243 * 14 12 11 38 38 H 1.08994 * 109.47412 * 60.00676 * 14 12 11 39 39 H 0.97001 * 120.00196 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.02399 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7235 3.3755 -1.2012 6 6 2.9498 4.0326 -0.0070 7 6 2.7250 3.3795 1.1959 8 8 2.9522 4.0217 2.3719 9 6 3.4279 5.3670 2.2949 10 6 3.6242 5.9200 3.7079 11 8 4.6780 5.1776 4.3762 12 6 4.9764 5.5411 5.6334 13 8 4.3768 6.4492 6.1582 14 6 6.0588 4.8156 6.3906 15 16 6.2222 5.5326 8.0446 16 6 7.5168 4.5254 8.6881 17 1 7.9487 3.7459 8.0779 18 6 7.9808 4.7329 9.9796 19 7 7.4540 5.6825 10.7236 20 14 9.3528 3.6646 10.6622 21 1 10.5646 3.8154 9.8171 22 1 9.6635 4.0859 12.0518 23 1 8.9215 2.2436 10.6600 24 6 2.2625 2.0713 1.1965 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0818 1.5618 -2.1324 31 1 2.9027 3.8820 -2.1382 32 1 3.3056 5.0523 -0.0103 33 1 2.7005 5.9797 1.7624 34 1 4.3787 5.3863 1.7622 35 1 3.9014 6.9726 3.6508 36 1 2.6958 5.8188 4.2700 37 1 5.7978 3.7608 6.4764 38 1 7.0040 4.9138 5.8568 39 1 7.7786 5.8278 11.6261 40 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915388006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:26 Heat of formation + Delta-G solvation = -112.947903 kcal Electronic energy + Delta-G solvation = -21625.117291 eV Core-core repulsion = 18110.270986 eV Total energy + Delta-G solvation = -3514.846305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51695 -39.95162 -38.11465 -36.15130 -34.14006 -32.48088 -31.73399 -30.20119 -29.41931 -29.03337 -25.56470 -24.65125 -23.24012 -22.77718 -21.20419 -20.70355 -18.18873 -17.94548 -17.29789 -16.64409 -16.35817 -16.14923 -15.82945 -15.41141 -14.94537 -14.84180 -14.33747 -14.10502 -13.84506 -13.72252 -13.38446 -13.33346 -12.83609 -12.61555 -12.56633 -12.16398 -12.06876 -11.88412 -11.59582 -11.32683 -11.17319 -11.09611 -11.05863 -10.98098 -10.81708 -10.52274 -10.02955 -9.90888 -9.10388 -9.08352 -8.42585 -8.36488 -6.60200 -6.26835 -3.99655 1.04086 1.20279 2.59612 2.64674 2.88934 3.22366 3.23745 3.27583 3.48035 3.50876 4.15221 4.37703 4.44758 4.62658 4.68356 4.74341 4.80106 4.87188 4.98662 5.03003 5.08801 5.11192 5.13244 5.23077 5.27729 5.36168 5.42674 5.57471 5.62009 5.62693 5.78498 5.79042 5.87008 6.05348 6.09301 6.15605 6.33485 6.50924 6.63459 7.18252 7.55548 8.14461 8.30619 9.18483 10.80586 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002186 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.967179 B =12808.184059 C =13644.437631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.044 4.044 4 C -0.160 4.160 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.137 3.863 8 O -0.306 6.306 9 C 0.063 3.937 10 C 0.067 3.933 11 O -0.355 6.355 12 C 0.480 3.520 13 O -0.489 6.489 14 C -0.128 4.128 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.922 3.078 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.150 4.150 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.270 0.730 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 -6.540 -25.223 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.044 4.044 4 C -0.178 4.178 5 C -0.096 4.096 6 C -0.235 4.235 7 C 0.092 3.908 8 O -0.219 6.219 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.273 6.273 12 C 0.322 3.678 13 O -0.375 6.375 14 C -0.276 4.276 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.748 3.252 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.307 -5.360 -24.215 27.687 hybrid contribution 1.547 -1.286 -0.324 2.038 sum -10.759 -6.647 -24.539 27.606 Atomic orbital electron populations 1.21747 0.94490 1.01843 1.02345 1.20576 0.96352 0.92274 1.03177 1.19690 0.96507 0.95933 0.92245 1.20911 1.04016 0.95407 0.97494 1.20908 0.96822 0.94496 0.97334 1.21254 1.08711 1.01286 0.92283 1.19017 0.94881 0.92240 0.84692 1.86178 1.80483 1.27351 1.27890 1.22920 0.99896 0.81671 0.96763 1.22995 0.91133 0.95523 0.91111 1.86571 1.52687 1.59203 1.28829 1.23321 0.83113 0.82039 0.79339 1.90667 1.50180 1.28641 1.67987 1.23299 0.97581 1.03765 1.02986 1.85396 1.49296 1.46586 1.01952 1.22803 1.22193 1.21244 1.02183 0.90620 1.25007 0.97183 0.95651 0.95686 1.70004 1.40815 1.29973 1.09475 0.86173 0.80997 0.80113 0.77940 1.19843 1.20778 1.19823 1.20329 1.05075 0.92707 0.98772 0.92262 0.92359 0.92556 0.90794 0.90664 0.86106 0.85861 0.85517 0.89782 0.90632 0.88879 0.90016 0.87831 0.87909 0.92019 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.54 16 2 C -0.09 -0.59 6.06 -27.88 -0.17 -0.76 16 3 C -0.04 -0.39 5.13 -104.65 -0.54 -0.93 16 4 C -0.16 -1.32 9.70 -39.56 -0.38 -1.70 16 5 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 6 C -0.22 -2.03 9.04 -39.43 -0.36 -2.39 16 7 C 0.14 1.55 6.69 -39.22 -0.26 1.29 16 8 O -0.31 -3.82 10.11 -23.01 -0.23 -4.06 16 9 C 0.06 0.62 5.13 37.16 0.19 0.81 16 10 C 0.07 0.82 5.84 37.16 0.22 1.04 16 11 O -0.35 -5.75 10.19 -42.02 -0.43 -6.17 16 12 C 0.48 9.31 7.97 36.01 0.29 9.60 16 13 O -0.49 -10.71 15.61 -18.75 -0.29 -11.00 16 14 C -0.13 -2.66 6.27 36.01 0.23 -2.43 16 15 S -0.06 -1.57 20.58 -107.50 -2.21 -3.78 16 16 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 17 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 20 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.15 -1.60 9.64 -39.43 -0.38 -1.98 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 33 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 34 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 36 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 37 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 38 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -33.49 362.04 -8.74 -42.23 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.74 Total: -1.91 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.00 Total: -11.86 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.73 Total: -25.11 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.95 Total: -21.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.49 -8.74 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915388006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.718 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds