Wall clock time and date at job start Tue Mar 31 2020 09:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47101 * 2 1 4 4 C 1.38287 * 119.97319 * 270.02248 * 3 2 1 5 5 C 1.38247 * 120.11084 * 180.02562 * 4 3 2 6 6 C 1.38168 * 120.05649 * 359.67852 * 5 4 3 7 7 C 1.38708 * 119.94125 * 0.57375 * 6 5 4 8 8 O 1.35904 * 120.05570 * 179.72127 * 7 6 5 9 9 C 1.42903 * 116.99628 * 359.72917 * 8 7 6 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 O 1.45194 * 109.47550 * 64.99819 * 10 9 8 12 12 C 1.34227 * 117.00087 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99644 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.46769 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99937 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00243 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00138 * 180.02562 * 16 15 14 19 19 N 1.31637 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46862 * 60.00043 * 20 18 16 22 22 H 1.48502 * 109.47139 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47083 * 300.00030 * 20 18 16 24 24 C 1.38123 * 119.97441 * 90.00342 * 3 2 1 25 25 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46460 * 299.99993 * 1 2 3 27 27 H 1.08994 * 109.47069 * 59.99586 * 1 2 3 28 28 H 1.09001 * 109.46820 * 239.99604 * 2 1 3 29 29 H 1.08999 * 109.46607 * 120.00323 * 2 1 3 30 30 H 1.08000 * 119.94054 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.96942 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.02385 * 180.29699 * 6 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 34 34 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 35 35 H 1.09002 * 109.46642 * 184.99995 * 10 9 8 36 36 H 1.09002 * 109.47069 * 304.99524 * 10 9 8 37 37 H 1.08999 * 109.47657 * 300.00243 * 14 12 11 38 38 H 1.08994 * 109.47412 * 60.00676 * 14 12 11 39 39 H 0.97001 * 120.00196 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.02399 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7235 3.3755 -1.2012 6 6 2.9498 4.0326 -0.0070 7 6 2.7250 3.3795 1.1959 8 8 2.9522 4.0217 2.3719 9 6 3.4279 5.3670 2.2949 10 6 3.6242 5.9200 3.7079 11 8 4.6780 5.1776 4.3762 12 6 4.9764 5.5411 5.6334 13 8 4.3768 6.4492 6.1582 14 6 6.0588 4.8156 6.3906 15 16 6.2222 5.5326 8.0446 16 6 7.5168 4.5254 8.6881 17 1 7.9487 3.7459 8.0779 18 6 7.9808 4.7329 9.9796 19 7 7.4540 5.6825 10.7236 20 14 9.3528 3.6646 10.6622 21 1 10.5646 3.8154 9.8171 22 1 9.6635 4.0859 12.0518 23 1 8.9215 2.2436 10.6600 24 6 2.2625 2.0713 1.1965 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0818 1.5618 -2.1324 31 1 2.9027 3.8820 -2.1382 32 1 3.3056 5.0523 -0.0103 33 1 2.7005 5.9797 1.7624 34 1 4.3787 5.3863 1.7622 35 1 3.9014 6.9726 3.6508 36 1 2.6958 5.8188 4.2700 37 1 5.7978 3.7608 6.4764 38 1 7.0040 4.9138 5.8568 39 1 7.7786 5.8278 11.6261 40 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915388006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:25 Heat of formation + Delta-G solvation = -131.153296 kcal Electronic energy + Delta-G solvation = -21625.906736 eV Core-core repulsion = 18110.270986 eV Total energy + Delta-G solvation = -3515.635750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59619 -41.06338 -38.89304 -37.55147 -34.72768 -34.61737 -32.70102 -31.34918 -30.34026 -29.91701 -27.71658 -25.37484 -24.06619 -23.46143 -22.52831 -21.49469 -19.93449 -18.94060 -18.76057 -17.72599 -17.52478 -16.91619 -16.90307 -16.84566 -16.59950 -15.94345 -15.56599 -15.08383 -14.92469 -14.60286 -14.48027 -14.28265 -14.09568 -13.71661 -13.55839 -13.38541 -13.19164 -12.88047 -12.75747 -12.72158 -12.64937 -12.27825 -11.99413 -11.86101 -11.81023 -11.76804 -11.58689 -11.53659 -11.15214 -10.40311 -9.75785 -9.14818 -8.74809 -8.37998 -6.18091 0.36984 0.49987 0.99641 1.09639 1.40301 1.44416 1.53445 1.86278 2.12011 2.23435 2.80457 2.96778 3.24428 3.56969 3.77498 3.83033 3.92971 3.96385 4.09243 4.15172 4.21912 4.25988 4.32857 4.40695 4.42042 4.48770 4.51904 4.58412 4.66265 4.78667 5.08649 5.09192 5.15126 5.21513 5.35431 5.38391 5.40056 5.50622 5.68690 5.86911 6.17189 6.43928 6.65286 7.03430 8.70959 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002186 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.967179 B =12808.184059 C =13644.437631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.049 4.049 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.222 4.222 7 C 0.114 3.886 8 O -0.334 6.334 9 C 0.065 3.935 10 C 0.059 3.941 11 O -0.351 6.351 12 C 0.490 3.510 13 O -0.520 6.520 14 C -0.110 4.110 15 S -0.136 6.136 16 C -0.550 4.550 17 H 0.085 0.915 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 1.000 3.000 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.174 4.174 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.273 0.727 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 -7.642 -27.705 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.049 4.049 4 C -0.181 4.181 5 C -0.097 4.097 6 C -0.240 4.240 7 C 0.069 3.931 8 O -0.249 6.249 9 C -0.009 4.009 10 C -0.015 4.015 11 O -0.268 6.268 12 C 0.333 3.667 13 O -0.408 6.408 14 C -0.258 4.258 15 S 0.091 5.909 16 C -0.697 4.697 17 H 0.103 0.897 18 C -0.189 4.189 19 N -0.545 5.545 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.193 4.193 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.725 -6.472 -26.734 29.901 hybrid contribution 1.258 -0.953 0.271 1.602 sum -10.467 -7.425 -26.463 29.411 Atomic orbital electron populations 1.21729 0.94000 1.02538 1.01913 1.20628 0.96721 0.91225 1.03790 1.19957 0.96095 0.96836 0.91997 1.21263 1.03124 0.95651 0.98042 1.21294 0.95771 0.94579 0.98061 1.21510 1.08456 1.02179 0.91889 1.19248 0.96218 0.92651 0.85018 1.86119 1.81112 1.28508 1.29112 1.23054 1.01463 0.81319 0.95087 1.23407 0.89595 0.96451 0.92025 1.86539 1.53729 1.59492 1.27035 1.22939 0.82381 0.81240 0.80185 1.90659 1.51213 1.29979 1.68956 1.23091 0.99366 1.03952 0.99399 1.85486 1.49867 1.48398 1.07111 1.23159 1.22296 1.21442 1.02836 0.89673 1.26128 0.99884 0.96990 0.95937 1.70158 1.42575 1.31862 1.09939 0.84983 0.77487 0.78178 0.77236 1.18594 1.20255 1.18722 1.20480 1.06410 0.93161 0.99248 0.91014 0.93574 0.92181 0.89225 0.90998 0.83819 0.83155 0.83684 0.86475 0.89467 0.87099 0.90678 0.86411 0.85945 0.91811 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.90 71.98 0.71 -0.91 16 2 C -0.09 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.05 -0.83 5.13 -19.88 -0.10 -0.93 16 4 C -0.16 -2.32 9.70 22.28 0.22 -2.10 16 5 C -0.08 -1.10 10.04 22.26 0.22 -0.88 16 6 C -0.22 -3.72 9.04 22.37 0.20 -3.52 16 7 C 0.11 2.51 6.69 22.50 0.15 2.66 16 8 O -0.33 -8.22 10.11 -89.06 -0.90 -9.12 16 9 C 0.07 1.17 5.13 71.98 0.37 1.54 16 10 C 0.06 1.39 5.84 71.98 0.42 1.81 16 11 O -0.35 -11.06 10.19 -48.74 -0.50 -11.55 16 12 C 0.49 18.90 7.97 71.24 0.57 19.46 16 13 O -0.52 -23.05 15.61 21.98 0.34 -22.71 16 14 C -0.11 -4.50 6.27 71.24 0.45 -4.06 16 15 S -0.14 -7.43 20.58 -56.49 -1.16 -8.59 16 16 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 17 H 0.09 4.49 7.80 -2.91 -0.02 4.46 16 18 C 0.02 0.89 5.49 84.85 0.47 1.36 16 19 N -0.91 -55.06 13.22 21.65 0.29 -54.78 16 20 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.17 -3.76 9.64 22.36 0.22 -3.55 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.83 8.09 -2.39 -0.02 0.82 16 29 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.15 1.76 6.30 -2.91 -0.02 1.74 16 33 H 0.12 1.33 7.65 -2.39 -0.02 1.31 16 34 H 0.09 1.36 7.67 -2.39 -0.02 1.34 16 35 H 0.11 2.23 8.13 -2.39 -0.02 2.21 16 36 H 0.07 1.88 8.13 -2.39 -0.02 1.87 16 37 H 0.12 4.50 8.14 -2.40 -0.02 4.48 16 38 H 0.12 4.54 8.14 -2.40 -0.02 4.52 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -73.75 362.04 5.84 -67.91 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.03 Total: 14.11 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.72 Total: -20.52 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.29 Total: -54.78 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.05 Total: -43.38 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -73.75 5.84 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915388006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.246 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds