Wall clock time and date at job start Tue Mar 31 2020 10:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34597 * 126.49261 * 2 1 4 4 Cl 1.73606 * 125.43535 * 0.02562 * 3 2 1 5 5 N 1.31028 * 109.13317 * 179.97438 * 3 2 1 6 6 C 1.33303 * 109.70052 * 359.73004 * 5 3 2 7 7 C 1.36678 * 107.83035 * 0.43614 * 6 5 3 8 8 C 1.46659 * 126.83890 * 179.83547 * 7 6 5 9 9 O 1.21699 * 119.99805 * 185.04130 * 8 7 6 10 10 N 1.34776 * 120.00486 * 5.04860 * 8 7 6 11 11 C 1.46493 * 120.00444 * 175.62719 * 10 8 7 12 12 H 1.09000 * 115.51418 * 9.58348 * 11 10 8 13 13 C 1.57113 * 116.92523 * 222.98969 * 11 10 8 14 14 H 1.08996 * 119.80328 * 3.77244 * 13 11 10 15 15 C 1.54796 * 118.02153 * 161.34939 * 13 11 10 16 16 N 1.48145 * 104.41746 * 86.47443 * 15 13 11 17 17 C 1.36937 * 127.83712 * 140.36833 * 16 15 13 18 18 H 1.08007 * 120.00048 * 339.57568 * 17 16 15 19 19 C 1.38804 * 120.00111 * 159.57724 * 17 16 15 20 20 N 1.31628 * 120.00000 * 334.02287 * 19 17 16 21 21 Si 1.86807 * 120.00230 * 154.02484 * 19 17 16 22 22 H 1.48505 * 109.46939 * 90.00113 * 21 19 17 23 23 H 1.48499 * 109.46660 * 330.00074 * 21 19 17 24 24 H 1.48497 * 109.47308 * 209.99863 * 21 19 17 25 25 C 1.48144 * 104.32723 * 320.10923 * 16 15 13 26 26 C 1.53001 * 117.44434 * 154.99896 * 11 10 8 27 27 H 1.09002 * 119.53779 * 354.24292 * 26 11 10 28 28 H 1.09002 * 109.47074 * 269.58988 * 1 2 3 29 29 H 1.08996 * 109.47178 * 29.58664 * 1 2 3 30 30 H 1.09000 * 109.47074 * 149.58977 * 1 2 3 31 31 H 1.07999 * 126.08152 * 180.30493 * 6 5 3 32 32 H 0.97006 * 119.99670 * 355.63477 * 10 8 7 33 33 H 1.09007 * 110.54185 * 327.73797 * 15 13 11 34 34 H 1.09003 * 110.46485 * 205.17731 * 15 13 11 35 35 H 0.96994 * 119.99786 * 354.66796 * 20 19 17 36 36 H 1.08996 * 110.40841 * 158.62832 * 25 16 15 37 37 H 1.09000 * 110.40681 * 280.94632 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2654 1.0821 0.0000 4 17 1.7269 2.7325 0.0006 5 7 3.5160 0.6911 0.0006 6 6 3.5705 -0.6408 0.0068 7 6 2.2875 -1.1121 0.0005 8 6 1.8669 -2.5171 0.0006 9 8 0.6872 -2.7991 -0.0980 10 7 2.7868 -3.4960 0.1102 11 6 2.3607 -4.8943 0.2068 12 1 1.3023 -5.0764 0.0205 13 6 3.1007 -5.7922 1.2625 14 1 3.8474 -5.3497 1.9217 15 6 2.4152 -7.1071 1.7069 16 7 2.8436 -8.1052 0.6995 17 6 3.1930 -9.4127 0.9082 18 1 3.4942 -9.7407 1.8922 19 6 3.1600 -10.3165 -0.1447 20 7 2.3535 -10.1100 -1.1643 21 14 4.2599 -11.8261 -0.1147 22 1 3.5434 -12.9476 0.5442 23 1 5.5009 -11.5193 0.6410 24 1 4.6098 -12.2113 -1.5055 25 6 2.8023 -7.3698 -0.5859 26 6 3.3518 -5.9667 -0.2498 27 1 4.2912 -5.6673 -0.7146 28 1 -0.3633 -0.0074 1.0277 29 1 -0.3633 0.8936 -0.5074 30 1 -0.3633 -0.8863 -0.5202 31 1 4.4685 -1.2406 0.0134 32 1 3.7312 -3.2746 0.1252 33 1 1.3308 -6.9962 1.6947 34 1 2.7572 -7.3984 2.7000 35 1 1.7273 -9.3695 -1.1451 36 1 3.4367 -7.8595 -1.3246 37 1 1.7778 -7.3011 -0.9516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961118921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:00 Heat of formation + Delta-G solvation = 65.994543 kcal Electronic energy + Delta-G solvation = -22462.571016 eV Core-core repulsion = 18882.192938 eV Total energy + Delta-G solvation = -3580.378077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.48774 -40.99778 -39.73501 -38.17202 -36.40905 -35.39939 -34.52028 -32.29913 -30.76199 -29.09937 -28.28327 -27.40034 -25.00740 -23.38747 -22.63752 -22.01627 -21.31396 -20.93784 -19.51293 -19.21286 -17.79226 -17.69598 -17.45814 -16.38585 -15.88225 -15.86107 -15.76487 -15.56419 -15.36212 -15.04443 -14.77458 -14.27308 -13.98921 -13.80558 -13.56440 -13.31282 -12.99536 -12.73366 -12.61817 -12.54025 -12.30217 -11.90572 -11.84642 -11.76333 -11.64429 -11.22668 -11.05693 -10.89501 -10.60265 -9.97607 -9.65427 -9.09847 -8.39380 -5.38986 -0.08142 -0.00714 1.33386 1.38894 1.58979 1.67474 1.85082 1.96231 2.00249 2.62200 2.70485 3.14336 3.29241 3.45272 3.60443 3.67296 3.70184 3.74758 4.00920 4.13261 4.18351 4.28471 4.31151 4.50470 4.62854 4.71299 4.82352 4.87886 5.00988 5.13181 5.17558 5.23876 5.36761 5.45626 5.63247 6.25134 6.25975 6.43966 6.80251 6.93907 7.63777 8.30709 8.97268 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.046806 B = 0.002356 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.069425 B =11883.757283 C =12087.318335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.415 5.415 3 C 0.257 3.743 4 Cl 0.062 6.938 5 N -0.492 5.492 6 C 0.063 3.937 7 C -0.084 4.084 8 C 0.602 3.398 9 O -0.572 6.572 10 N -0.664 5.664 11 C 0.121 3.879 12 H 0.116 0.884 13 C -0.161 4.161 14 H 0.144 0.856 15 C 0.146 3.854 16 N -0.621 5.621 17 C -0.340 4.340 18 H 0.064 0.936 19 C -0.080 4.080 20 N -0.946 5.946 21 Si 1.122 2.878 22 H -0.282 1.282 23 H -0.272 1.272 24 H -0.290 1.290 25 C 0.167 3.833 26 C -0.166 4.166 27 H 0.134 0.866 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.223 0.777 32 H 0.422 0.578 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.253 0.747 36 H 0.038 0.962 37 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 25.669 3.102 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.098 5.098 3 C -0.029 4.029 4 Cl 0.090 6.910 5 N -0.214 5.214 6 C -0.092 4.092 7 C -0.201 4.201 8 C 0.390 3.610 9 O -0.452 6.452 10 N -0.313 5.313 11 C 0.014 3.986 12 H 0.133 0.867 13 C -0.182 4.182 14 H 0.161 0.839 15 C 0.021 3.979 16 N -0.347 5.347 17 C -0.468 4.468 18 H 0.082 0.918 19 C -0.276 4.276 20 N -0.589 5.589 21 Si 0.946 3.054 22 H -0.209 1.209 23 H -0.197 1.197 24 H -0.216 1.216 25 C 0.041 3.959 26 C -0.187 4.187 27 H 0.152 0.848 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 0.974 24.690 2.228 24.810 hybrid contribution -1.308 0.864 0.721 1.726 sum -0.334 25.554 2.949 25.726 Atomic orbital electron populations 1.22604 0.73279 1.06697 1.05907 1.45207 1.09446 1.04204 1.50941 1.23506 0.86655 0.85416 1.07339 1.98445 1.88457 1.07185 1.96910 1.70121 1.16707 1.13362 1.21190 1.23278 0.96192 0.89823 0.99880 1.20565 0.91771 0.87775 1.20013 1.16727 0.85165 0.83348 0.75759 1.90813 1.18402 1.84225 1.51767 1.44644 1.10305 1.03717 1.72672 1.22069 0.96907 0.77719 1.01905 0.86662 1.25039 1.03517 0.97246 0.92436 0.83886 1.21336 0.95458 0.87695 0.93448 1.45572 1.78197 1.07582 1.03326 1.20029 1.42864 0.85031 0.98859 0.91816 1.27319 1.01033 1.04488 0.94710 1.70873 1.20454 1.31705 1.35839 0.82784 0.74706 0.72057 0.75882 1.20866 1.19746 1.21558 1.20959 0.96288 0.89557 0.89116 1.24172 1.01341 0.94369 0.98828 0.84786 0.88386 0.86742 0.88340 0.76104 0.73951 0.96403 0.92110 0.93685 0.94310 0.97510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 10.56 127.77 1.35 2.16 16 2 N -0.41 -7.94 3.18 -528.39 -1.68 -9.62 16 3 C 0.26 4.90 8.48 180.25 1.53 6.42 16 4 Cl 0.06 0.87 28.73 -2.72 -0.08 0.79 16 5 N -0.49 -10.24 11.21 -190.24 -2.13 -12.38 16 6 C 0.06 1.09 11.37 84.10 0.96 2.04 16 7 C -0.08 -1.73 6.91 39.95 0.28 -1.45 16 8 C 0.60 14.65 7.78 86.44 0.67 15.32 16 9 O -0.57 -17.91 14.44 -4.35 -0.06 -17.97 16 10 N -0.66 -14.10 5.56 -439.68 -2.44 -16.54 16 11 C 0.12 3.49 6.20 46.44 0.29 3.77 16 12 H 0.12 3.97 7.39 -2.39 -0.02 3.95 16 13 C -0.16 -4.95 7.25 -8.30 -0.06 -5.01 16 14 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 15 C 0.15 5.93 7.08 86.68 0.61 6.55 16 16 N -0.62 -31.49 3.23 -687.34 -2.22 -33.71 16 17 C -0.34 -19.17 10.18 84.03 0.86 -18.31 16 18 H 0.06 3.54 7.95 -2.91 -0.02 3.51 16 19 C -0.08 -4.59 5.09 84.86 0.43 -4.15 16 20 N -0.95 -58.54 12.80 21.65 0.28 -58.27 16 21 Si 1.12 50.67 29.99 68.60 2.06 52.73 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 C 0.17 7.72 5.01 86.54 0.43 8.16 16 26 C -0.17 -5.46 6.91 -9.88 -0.07 -5.53 16 27 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.05 7.77 -2.39 -0.02 1.04 16 30 H 0.10 1.82 6.42 -2.39 -0.02 1.80 16 31 H 0.22 2.02 7.46 -2.91 -0.02 2.00 16 32 H 0.42 5.86 7.77 -92.70 -0.72 5.14 16 33 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.25 15.99 6.50 -92.71 -0.60 15.39 16 36 H 0.04 2.00 7.44 -2.39 -0.02 1.98 16 37 H 0.01 0.35 7.69 -2.39 -0.02 0.33 16 Total: -1.00 -74.43 330.37 1.57 -72.87 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.57 Total: 12.14 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 7.28 Total: 9.96 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -8.20 Total: -130.52 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.06 Total: -17.97 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.06 Total: 52.73 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.79 kcal Total: -74.43 1.57 -72.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961118921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.860 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds