Wall clock time and date at job start Tue Mar 31 2020 09:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31932 * 119.01432 * 2 1 4 4 C 1.32132 * 121.05568 * 179.97438 * 3 2 1 5 5 C 1.38993 * 119.12492 * 359.72360 * 4 3 2 6 6 Cl 1.73600 * 120.88776 * 180.29587 * 5 4 3 7 7 C 1.39637 * 118.22177 * 0.53817 * 5 4 3 8 8 C 1.48371 * 120.55668 * 179.73796 * 7 5 4 9 9 O 1.21483 * 120.00174 * 359.72152 * 8 7 5 10 10 N 1.34777 * 119.99492 * 179.71860 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72345 * 10 8 7 12 12 H 1.09003 * 110.88938 * 329.15456 * 11 10 8 13 13 C 1.55161 * 111.00561 * 205.28118 * 11 10 8 14 14 C 1.54331 * 102.93879 * 277.42706 * 13 11 10 15 15 N 1.47024 * 107.27011 * 337.80597 * 14 13 11 16 16 C 1.36935 * 125.64661 * 178.98409 * 15 14 13 17 17 H 1.07998 * 120.00339 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99848 * 359.97438 * 16 15 14 19 19 N 1.31617 * 120.00493 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99921 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47470 * 119.99828 * 20 18 16 23 23 H 1.48505 * 109.47183 * 240.00408 * 20 18 16 24 24 C 1.47418 * 108.70330 * 358.94023 * 15 14 13 25 25 N 1.31516 * 119.01884 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47425 * 270.02100 * 1 2 3 27 27 H 1.09000 * 109.47345 * 30.02455 * 1 2 3 28 28 H 1.09001 * 109.46862 * 150.02163 * 1 2 3 29 29 H 1.07996 * 120.43831 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.08996 * 110.72196 * 35.78728 * 13 11 10 32 32 H 1.08990 * 110.72307 * 158.89011 * 13 11 10 33 33 H 1.09001 * 109.88027 * 97.22554 * 14 13 11 34 34 H 1.08999 * 109.88222 * 218.38774 * 14 13 11 35 35 H 0.96995 * 120.00120 * 179.97438 * 19 18 16 36 36 H 1.09000 * 110.37044 * 265.28953 * 24 15 14 37 37 H 1.09006 * 110.36755 * 142.96761 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4674 1.2008 0.0005 5 6 4.1867 0.0115 0.0069 6 17 5.9227 0.0200 0.0155 7 6 3.4757 -1.1903 0.0010 8 6 4.1912 -2.4901 0.0015 9 8 5.4058 -2.5148 0.0020 10 7 3.4936 -3.6432 0.0015 11 6 4.2001 -4.9266 -0.0041 12 1 5.1515 -4.8443 -0.5296 13 6 3.3185 -6.0441 -0.6219 14 6 2.4264 -6.4745 0.5616 15 7 3.1202 -6.0813 1.7968 16 6 2.6510 -6.2678 3.0696 17 1 3.2391 -5.9425 3.9151 18 6 1.4195 -6.8749 3.2733 19 7 0.7024 -7.2709 2.2431 20 14 0.7797 -7.1300 5.0097 21 1 1.7680 -6.6014 5.9840 22 1 -0.5097 -6.4117 5.1728 23 1 0.5727 -8.5803 5.2530 24 6 4.4051 -5.4539 1.4380 25 7 2.1450 -1.1501 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 3.9810 2.1508 0.0001 30 1 2.5238 -3.6235 0.0008 31 1 2.7128 -5.6505 -1.4381 32 1 3.9342 -6.8749 -0.9663 33 1 1.4620 -5.9701 0.5015 34 1 2.2837 -7.5550 0.5445 35 1 -0.1580 -7.6955 2.3855 36 1 5.2072 -6.1916 1.4617 37 1 4.6269 -4.6292 2.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015799710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:14 Heat of formation + Delta-G solvation = 24.059787 kcal Electronic energy + Delta-G solvation = -23287.826173 eV Core-core repulsion = 19705.629668 eV Total energy + Delta-G solvation = -3582.196505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52261 -40.79733 -38.91090 -37.81444 -35.60456 -35.13360 -34.13836 -33.51569 -31.02507 -29.45155 -29.14001 -27.12030 -26.25160 -24.35897 -22.52082 -21.91840 -21.34443 -19.73622 -19.05884 -18.63519 -17.40610 -17.28735 -16.94388 -16.65311 -16.30319 -15.86168 -15.57914 -15.44299 -14.79514 -14.58416 -14.17094 -13.87754 -13.85280 -13.58158 -13.30247 -12.90871 -12.88759 -12.84156 -12.61652 -12.54631 -12.33358 -12.15249 -12.05257 -11.99645 -11.82959 -11.61678 -11.41717 -10.72802 -10.39379 -10.37758 -10.10929 -8.86013 -7.84891 -5.18929 -0.90874 -0.43690 0.78877 1.45148 1.45610 1.52385 1.55599 1.80537 2.45378 2.48921 2.58553 2.79152 3.20031 3.34430 3.38801 3.66704 3.74365 3.85013 4.05609 4.24756 4.30860 4.66547 4.68509 4.72311 4.72510 4.77930 4.87625 4.94882 5.03060 5.21551 5.38739 5.44533 5.50063 5.67507 5.77438 6.20296 6.35728 6.67208 6.96441 7.12182 7.77487 8.41356 9.25292 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.004265 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.727851 B = 6563.025994 C = 7415.875888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.494 5.494 4 C 0.180 3.820 5 C -0.116 4.116 6 Cl -0.002 7.002 7 C 0.131 3.869 8 C 0.560 3.440 9 O -0.530 6.530 10 N -0.679 5.679 11 C 0.138 3.862 12 H 0.114 0.886 13 C -0.133 4.133 14 C 0.184 3.816 15 N -0.621 5.621 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.123 3.877 25 N -0.497 5.497 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.224 0.776 30 H 0.412 0.588 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.018 0.982 34 H 0.011 0.989 35 H 0.247 0.753 36 H 0.039 0.961 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 17.348 -8.930 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.209 5.209 4 C 0.011 3.989 5 C -0.149 4.149 6 Cl 0.027 6.973 7 C -0.017 4.017 8 C 0.343 3.657 9 O -0.406 6.406 10 N -0.328 5.328 11 C 0.033 3.967 12 H 0.132 0.868 13 C -0.172 4.172 14 C 0.059 3.941 15 N -0.348 5.348 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.003 4.003 25 N -0.215 5.215 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.360 17.155 -8.826 19.583 hybrid contribution 0.130 -0.564 1.180 1.315 sum 3.489 16.591 -7.646 18.599 Atomic orbital electron populations 1.20800 0.82450 1.05833 1.05350 1.24039 1.00022 0.82376 0.88927 1.68453 1.09334 1.29837 1.13292 1.24043 0.88864 0.97990 0.88011 1.22997 0.89871 0.96081 1.05955 1.98433 1.04295 1.98603 1.95970 1.21574 0.90186 0.94114 0.95784 1.17893 0.86650 0.83314 0.77825 1.90830 1.12658 1.86915 1.50233 1.45724 1.11269 1.04665 1.71168 1.22142 0.96621 0.81757 0.96155 0.86835 1.23091 0.98627 0.97571 0.97899 1.20956 0.93057 0.96670 0.83425 1.44703 1.17955 1.69834 1.02278 1.19368 1.01108 1.32726 0.83787 0.90955 1.25505 0.97506 1.01212 1.00911 1.70148 1.13442 1.46559 1.29246 0.85105 0.77860 0.77058 0.79865 1.19724 1.21709 1.21772 1.22066 0.88695 0.94925 0.94617 1.68386 1.07317 1.32143 1.13607 0.88246 0.87123 0.88743 0.76007 0.75182 0.89096 0.88539 0.96370 0.97052 0.94321 0.94360 0.95441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.31 71.24 0.73 -0.66 16 2 C 0.31 7.21 7.64 138.79 1.06 8.27 16 3 N -0.49 -10.34 10.31 -187.77 -1.94 -12.28 16 4 C 0.18 3.34 11.14 84.83 0.94 4.29 16 5 C -0.12 -2.82 6.40 22.79 0.15 -2.67 16 6 Cl 0.00 -0.05 26.25 -2.72 -0.07 -0.12 16 7 C 0.13 3.85 6.79 41.99 0.29 4.14 16 8 C 0.56 18.65 7.82 86.94 0.68 19.33 16 9 O -0.53 -18.95 13.78 -3.66 -0.05 -19.00 16 10 N -0.68 -23.04 5.18 -438.32 -2.27 -25.32 16 11 C 0.14 4.76 3.43 46.38 0.16 4.92 16 12 H 0.11 3.54 7.54 -2.39 -0.02 3.52 16 13 C -0.13 -4.50 6.55 31.79 0.21 -4.29 16 14 C 0.18 8.64 5.36 86.73 0.47 9.11 16 15 N -0.62 -31.53 3.39 -691.98 -2.35 -33.88 16 16 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 19 N -0.94 -55.58 10.31 21.65 0.22 -55.36 16 20 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 C 0.12 5.19 6.93 86.86 0.60 5.80 16 25 N -0.50 -13.96 9.59 -177.05 -1.70 -15.66 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.22 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.41 14.38 8.05 -92.71 -0.75 13.63 16 31 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 34 H 0.01 0.60 7.51 -2.39 -0.02 0.58 16 35 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -68.67 329.51 0.86 -67.81 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.37 Total: 13.21 kcal Atomic # 6 Polarization: 26.08 SS G_CDS: 6.61 Total: 32.69 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -8.03 Total: -142.50 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.05 Total: -19.00 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.07 Total: -0.12 kcal Total: -68.67 0.86 -67.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015799710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.873 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds